BAC Information

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BAC

Clone NameB6Ng01-211H15
Chromosome3 (Build37)
Map Location 158,196,542 - 158,327,157
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H15.bB6Ng01-211H15.g
ACCGA029535GA029536
length1,2011,078
definitionB6Ng01-211H15.b B6Ng01-211H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,325,958 - 158,327,157)(158,196,542 - 158,197,614)
sequence
gaattctttgtttagctttgtacctcattttttaatggggttatttgatt
ttccggagtctagcttcttgagttctttgtatatattggatattagtccc
ctatcaaatttaggattggtaaagattctttcccaatctgttggtagcct
ttttgtcttattgacagtgtctttgccttacaaaaaagctataattttaa
agtagaatattctttcaaaacttgcaatcatagaaaatatccatagctca
cttacctctttctcttttggtttatttgctattgtagccaagctataaag
aaaacaaaagtattttccttctgtgcttgcaccctaggtagtgaatattt
cctgggaaaccacatagcacttctttgactttaaactcatactcagaact
gcaatgaggcctggttctcacatctgtgttttcctttaaaatgtgcttca
cactcttcaaactgataacttcatacagtgtcctgtctgcacatctgctc
ctgttttcccttgctatggtagataaaatcattgttccttctcttttaat
tttaggctatgaacatttacctaaaggctgagtctcttaatctgacatct
ttccctgcttcaaacatgcagcaggatgttctgccaacaactttccttct
tgtgctgtcatttcctccttcctactctgttacttcctgtcgacataaag
gctatggaggttttcacattttttaaaaattcttcccatatcacatttat
gactcccagttttcacatattctttttctaaaaaaaaacactttttgggg
aaggaccttctgctgtctccatttcttcatgccacagttgttcttaagtg
ggacagattttctgtgtcttttgagactttaaagcatctttctgcatagt
ttacccctctttttgaataaacatttttgcaatttttatactaccatatt
ctactagttttcttccaagcttttagcttcttttatgtgtttactccatt
ctgtatgaaagccagccattgggtctagctgctaggtaagcttttcatta
caatgattttgaaaaataacttcattctgcattactctcaatatctgctt
tacagcacaaaacttctgttttctgaattttggacttatatactgaggca
attacttggacctttgttagaataattcacaactataccagaaggtatat
a
gaattcaaggttatccttcatgatatagtaagttcatatccagtctgaac
tacaggagaccctgtctcaaaacagcaacaaaagtgaagagctaagtact
cacttgatcatgaatcctgaatcacagacccaatttctgctgaatttcca
gcaggatatacacacaccatacacacacacacacacacacacacacacac
acacacacacagagagagagagagagagagagagagagagagagagagag
agagagagcatatcttggtaatatagtttatgaaaaacgtgacactctaa
gctgtcaggacactaaggatcccattaatagttcccttggaggaatccat
catggaagctcctgctttattgtgctttccataggggcattacttaaggc
tcagatggccttgcttcagagcctgtgtgatttatgctttctgggcagca
agatttttcctcttgacatctatgaggcaaatactattctgagaaacatc
ttcttatacactgccccttttgataaggtgcccacataaggttttcttgg
caaccctggatgctaaagcaaggtaatggaaatataatactaagtggggg
cacttaggtgacagacaatctcactgctcaggattgctactgggatttca
tgtttataaagttttgaggcagaaaacaagttaaccatctcctttaagag
ttttcagaaacactaataagtacatttactttccgttttatttagaattt
actttcctatttcaattaattgtgacatgatttagtaaagattaaaattg
attttatatgtgaaatacaaatttcatttaagcaaaatagcccctgtgtc
taaccaccatttcttataataattaataatatttaatagtgattttctat
gacacattcagcatcttctttttttttttaaattaggtattttcctcgtt
taacattttcaatgctatcccaaaggtcccccggtacccacccccccaat
tcccctacccacccactcccccttttggccctggcgttcaatataaaggt
tacaagttcaaatgggacctctctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158325958_158327157
seq2: B6Ng01-211H15.b_45_1245 (reverse)

seq1  TATATTACCTCTGGTATAGTTGTGAATTA-TCTAACAAAAGT-CAATTAA  48
      |||||  | |||||||||||||||||||| ||||||||| || ||| |||
seq2  TATATACCTTCTGGTATAGTTGTGAATTATTCTAACAAAGGTCCAAGTAA  50

seq1  TTCCCTCACTATATAAGTCAAAATATCAG-AAACAGAAGTTTTGTGCTGT  97
      || ||||| |||||||||| |||  |||| ||||||||||||||||||||
seq2  TTGCCTCAGTATATAAGTCCAAAATTCAGAAAACAGAAGTTTTGTGCTGT  100

seq1  AAAAGCAGATA-TGAGAGT-ATGCAGAATGAAAGTTATTTTTCAAAATCA  145
       |||||||||| ||||||| |||||||||| |||||||||||||||||||
seq2  -AAAGCAGATATTGAGAGTAATGCAGAATG-AAGTTATTTTTCAAAATCA  148

seq1  TTGTAATTGAAAAGCTTACCTAGCAGCTAGACCCAATGGCTGGCTTTCAT  195
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAA-TGAAAAGCTTACCTAGCAGCTAGACCCAATGGCTGGCTTTCAT  197

seq1  ACAGAATGGAGTAAACACATAAAAGAAGCTAAAAGCTTTGGAAGAAAACT  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGAATGGAGTAAACACATAAAAGAAGCTAAAAGC-TTGGAAGAAAACT  246

seq1  AGTAGAATATGGTAGTATAAAAATTGCAAAAATGTTTATTCAAAAAGAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATATGGTAGTATAAAAATTGCAAAAATGTTTATTCAAAAAGAGG  296

seq1  GGTAAACTATGCAGAAAGATGCTTTAAAGTCTCAAAAGACACAGAAAATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTATGCAGAAAGATGCTTTAAAGTCTCAAAAGACACAGAAAATC  346

seq1  TGTCCCACTTAAGAACAACTGTGGCATGAAGAAATGGAGACAGCAGAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACTTAAGAACAACTGTGGCATGAAGAAATGGAGACAGCAGAAGG  396

seq1  TCCTTCCCCAAAAAGTGTTTTTTTTTAGAAAAAGAATATGTGAAAACTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCAAAAAGTGTTTTTTTTTAGAAAAAGAATATGTGAAAACTGG  446

seq1  GAGTCATAAATGTGATATGGGAAGAATTTTTAAAAAATGTGAAAACCTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATAAATGTGATATGGGAAGAATTTTTAAAAAATGTGAAAACCTCC  496

seq1  ATAGCCTTTATGTCGACAGGAAGTAACAGAGTAGGAAGGAGGAAATGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTTATGTCGACAGGAAGTAACAGAGTAGGAAGGAGGAAATGACA  546

seq1  GCACAAGAAGGAAAGTTGTTGGCAGAACATCCTGCTGCATGTTTGAAGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGAAGGAAAGTTGTTGGCAGAACATCCTGCTGCATGTTTGAAGCA  596

seq1  GGGAAAGATGTCAGATTAAGAGACTCAGCCTTTAGGTAAATGTTCATAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGATGTCAGATTAAGAGACTCAGCCTTTAGGTAAATGTTCATAGC  646

seq1  CTAAAATTAAAAGAGAAGGAACAATGATTTTATCTACCATAGCAAGGGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTAAAAGAGAAGGAACAATGATTTTATCTACCATAGCAAGGGAA  696

seq1  AACAGGAGCAGATGTGCAGACAGGACACTGTATGAAGTTATCAGTTTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGCAGATGTGCAGACAGGACACTGTATGAAGTTATCAGTTTGAA  746

seq1  GAGTGTGAAGCACATTTTAAAGGAAAACACAGATGTGAGAACCAGGCCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAAGCACATTTTAAAGGAAAACACAGATGTGAGAACCAGGCCTC  796

seq1  ATTGCAGTTCTGAGTATGAGTTTAAAGTCAAAGAAGTGCTATGTGGTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTTCTGAGTATGAGTTTAAAGTCAAAGAAGTGCTATGTGGTTTC  846

seq1  CCAGGAAATATTCACTACCTAGGGTGCAAGCACAGAAGGAAAATACTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATATTCACTACCTAGGGTGCAAGCACAGAAGGAAAATACTTTT  896

seq1  GTTTTCTTTATAGCTTGGCTACAATAGCAAATAAACCAAAAGAGAAAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTATAGCTTGGCTACAATAGCAAATAAACCAAAAGAGAAAGAG  946

seq1  GTAAGTGAGCTATGGATATTTTCTATGATTGCAAGTTTTGAAAGAATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGAGCTATGGATATTTTCTATGATTGCAAGTTTTGAAAGAATATT  996

seq1  CTACTTTAAAATTATAGCTTTTTTGTAAGGCAAAGACACTGTCAATAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAAAATTATAGCTTTTTTGTAAGGCAAAGACACTGTCAATAAGA  1046

seq1  CAAAAAGGCTACCAACAGATTGGGAAAGAATCTTTACCAATCCTAAATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCTACCAACAGATTGGGAAAGAATCTTTACCAATCCTAAATTT  1096

seq1  GATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGCTAGACTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGCTAGACTC  1146

seq1  CGGAAAATCAAATAACCCCATTAAAAAATGAGGTACAAAGCTAAACAAAG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAATCAAATAACCCCATTAAAAAATGAGGTACAAAGCTAAACAAAG  1196

seq1  AATTC  1200
      |||||
seq2  AATTC  1201

seq1: chr3_158196542_158197614
seq2: B6Ng01-211H15.g_65_1142

seq1  GAATTCAAGGTTATCCTTCATGATATAGTAAGTTCATATCCAGTCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTATCCTTCATGATATAGTAAGTTCATATCCAGTCTGAAC  50

seq1  TACAGGAGACCCTGTCTCAAAACAGCAACAAAAGTGAAGAGCTAAGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGACCCTGTCTCAAAACAGCAACAAAAGTGAAGAGCTAAGTACT  100

seq1  CACTTGATCATGAATCCTGAATCACAGACCCAATTTCTGCTGAATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATCATGAATCCTGAATCACAGACCCAATTTCTGCTGAATTTCCA  150

seq1  GCAGGATATACACACACCATACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATATACACACACCATACACACACACACACACACACACACACACAC  200

seq1  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGAGCATATCTTGGTAATATAGTTTATGAAAAACGTGACACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCATATCTTGGTAATATAGTTTATGAAAAACGTGACACTCTAA  300

seq1  GCTGTCAGGACACTAAGGATCCCATTAATAGTTCCCTTGGAGGAATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGGACACTAAGGATCCCATTAATAGTTCCCTTGGAGGAATCCAT  350

seq1  CATGGAAGCTCCTGCTTTATTGTGCTTTCCATAGGGGCATTACTTAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGCTCCTGCTTTATTGTGCTTTCCATAGGGGCATTACTTAAGGC  400

seq1  TCAGATGGCCTTGCTTCAGAGCCTGTGTGATTTATGCTTTCTGGGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGCCTTGCTTCAGAGCCTGTGTGATTTATGCTTTCTGGGCAGCA  450

seq1  AGATTTTTCCTCTTGACATCTATGAGGCAAATACTATTCTGAGAAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTCCTCTTGACATCTATGAGGCAAATACTATTCTGAGAAACATC  500

seq1  TTCTTATACACTGCCCCTTTTGATAAGGTGCCCACATAAGGTTTTCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACACTGCCCCTTTTGATAAGGTGCCCACATAAGGTTTTCTTGG  550

seq1  CAACCCTGGATGCTAAAGCAAGGTAATGGAAATATAATACTAAGTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGGATGCTAAAGCAAGGTAATGGAAATATAATACTAAGTGGGGG  600

seq1  CACTTAGGTGACAGACAATCTCACTGCTCAGGATTGCTACTGGGATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGTGACAGACAATCTCACTGCTCAGGATTGCTACTGGGATTTCA  650

seq1  TGTTTATAAAGTTTTGAGGCAGAAAACAAGTTAACCATCTCCTTTAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAAAGTTTTGAGGCAGAAAACAAGTTAACCATCTCCTTTAAGAG  700

seq1  TTTTCAGAAACACTAATAAGTACATTTACTTTCCGTTTTATTTAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAACACTAATAAGTACATTTACTTTCCGTTTTATTTAGAATTT  750

seq1  ACTTTCCTATTTCAATTAATTGTGACATGATTTAGTAAAGATTAAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTATTTCAATTAATTGTGACATGATTTAGTAAAGATTAAAATTG  800

seq1  ATTTTATATGTGAAATACAAATTTCATTTAAGCAAAATAGCCCCTGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATGTGAAATACAAATTTCATTTAAGCAAAATAGCCCCTGTGTC  850

seq1  TAACCACCATTTCTTATAATAATTAATAATATTTAATAGTGATTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCATTTCTTATAATAATTAATAATATTTAATAGTGATTTTCTAT  900

seq1  GACACATTCAGCATCTTCTTTTTTTTTTTAAATTAGGTATTTTCCTCGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTCAGCATCTTCTTTTTTTTTTTAAATTAGGTATTTTCCTCGTT  950

seq1  T-ACATTTTCAATGCTATCCCAAAGGTCCCCC-GTACCCACCCCCCCAA-  997
      | |||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TAACATTTTCAATGCTATCCCAAAGGTCCCCCGGTACCCACCCCCCCAAT  1000

seq1  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTC-ATATAAAGT  1046
      |||||||||||||||||||||| ||||||||||||||||| |||||||| 
seq2  TCCCCTACCCACCCACTCCCCC-TTTTGGCCCTGGCGTTCAATATAAAGG  1049

seq1  TTACAAG-TCCAATGGG-CCTCTCTTTGC  1073
      ||||||| || |||||| |||||||||||
seq2  TTACAAGTTCAAATGGGACCTCTCTTTGC  1078