BAC Information

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BAC

Clone NameB6Ng01-211I05
Chromosome3 (Build37)
Map Location 24,413,813 - 24,576,650
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211I05.bB6Ng01-211I05.g
ACCGA029563GA029564
length1,207211
definitionB6Ng01-211I05.b B6Ng01-211I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,413,813 - 24,415,007)(24,576,446 - 24,576,650)
sequence
gaattccatctgtaaaactgaaaaagtgtgtgctgtcaaagaagcacaca
tgatcaccacattttgatacctgaagtggtagcatgataataactgtgta
aaacagcgacttccttctctcaaaataattatggctctctagaaaccagc
atctgtgctgccagatgtttctgtcaaacacataagcaatgggtttgaac
actgtgcatgtctggctgctatccaatagtctattattactgcagaagtg
gtggctttctggagtccacagtgttaagtaccatggaacattaatcctgt
tccatcaaacctgaaagttttcaccagtaatgggttgtgtattaattcag
tatcaagccactaatttagtgttgacagacaattttatagtgatgcttaa
aatggaagaaatacaaatgctaacatttaatgatactattaaaaatggaa
aactaattataaatcaaaatggtgttactgtttttaccacaaaaaatgac
atcatagcatgaatgcactaaacattattttatgaaatatataagaaaat
attacttcttaaagaaatgattcaaagtgagtataattgatagctataaa
acacgttagcatcattttacagtcaacattactaagacattaaaattttg
ataatgacataaggtgagtaactaatttgggggcaactcttaaaatttga
ggtagtctttccttgcgttaaagtaaattttgattaataaagcagcgata
gcttattcaactaaaaacttcttttctcttatgtgtattagaagttttca
actaacaattttaataagtataaaatgtacatctcccattaaaatttatt
taaaatcaggtttattttctaacttaaaattacttcagtagatattagtt
agatattttaaagaaagatgtaataaaaagtagcatacagaatttactgt
gaaagacattcagaacataattaaattgagaattatgggaaatgaggtca
tctgttgtaaacagccaacttacagaaataggagaaagcaatcttaacat
ttgtcatgcagctatttcctaggaattacacaggggactgaagaacttaa
aatagcaataagaaactagataattttggcctaaaaaaaaaaattggcca
aataaacctaacatgacctttttttaatggaaacatagaaaatggacaac
aaggcct

cacatcaacgaatgattttgctgtgattctaaaggaaagctaacattggt
cacttttgagtataatcttgaaagatacactatcagcctgtaatctgaag
tgctgcaatcttaaaacatcaaaatctgtgtaagatcccaaacaacaaaa
acccctgatctctctctctctctctctctctctctctctctctctctctc
tctctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24413813_24415007
seq2: B6Ng01-211I05.b_46_1252

seq1  GAATTCCATCTGTAAAACTGAAAAAGTGTGTGCTGTCAAAGAAGCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGTAAAACTGAAAAAGTGTGTGCTGTCAAAGAAGCACACA  50

seq1  TGATCACCACATTTTGATACCTGAAGTGGTAGCATGATAATAACTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCACATTTTGATACCTGAAGTGGTAGCATGATAATAACTGTGTA  100

seq1  AAACAGCGACTTCCTTCTCTCAAAATAATTATGGCTCTCTAGAAACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCGACTTCCTTCTCTCAAAATAATTATGGCTCTCTAGAAACCAGC  150

seq1  ATCTGTGCTGCCAGATGTTTCTGTCAAACACATAAGCAATGGGTTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCTGCCAGATGTTTCTGTCAAACACATAAGCAATGGGTTTGAAC  200

seq1  ACTGTGCATGTCTGGCTGCTATCCAATAGTCTATTATTACTGCAGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCATGTCTGGCTGCTATCCAATAGTCTATTATTACTGCAGAAGTG  250

seq1  GTGGCTTTCTGGAGTCCACAGTGTTAAGTACCATGGAACATTAATCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCTGGAGTCCACAGTGTTAAGTACCATGGAACATTAATCCTGT  300

seq1  TCCATCAAACCTGAAAGTTTTCACCAGTAATGGGTTGTGTATTAATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAACCTGAAAGTTTTCACCAGTAATGGGTTGTGTATTAATTCAG  350

seq1  TATCAAGCCACTAATTTAGTGTTGACAGACAATTTTATAGTGATGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGCCACTAATTTAGTGTTGACAGACAATTTTATAGTGATGCTTAA  400

seq1  AATGGAAGAAATACAAATGCTAACATTTAATGATACTATTAAAAATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAAATACAAATGCTAACATTTAATGATACTATTAAAAATGGAA  450

seq1  AACTAATTATAAATCAAAATGGTGTTACTGTTTTTACCACAAAAAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTATAAATCAAAATGGTGTTACTGTTTTTACCACAAAAAATGAC  500

seq1  ATCATAGCATGAATGCACTAAACATTATTTTATGAAATATATAAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCATGAATGCACTAAACATTATTTTATGAAATATATAAGAAAAT  550

seq1  ATTACTTCTTAAAGAAATGATTCAAAGTGAGTATAATTGATAGCTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCTTAAAGAAATGATTCAAAGTGAGTATAATTGATAGCTATAAA  600

seq1  ACACGTTAGCATCATTTTACAGTCAACATTACTAAGACATTAAAATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTAGCATCATTTTACAGTCAACATTACTAAGACATTAAAATTTTG  650

seq1  ATAATGACATAAGGTGAGTAACTAATTTGGGGGCAACTCTTAAAATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACATAAGGTGAGTAACTAATTTGGGGGCAACTCTTAAAATTTGA  700

seq1  GGTAGTCTTTCCTTGCGTTAAAGTAAATTTTGATTAATAAAGCAGCGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTTTCCTTGCGTTAAAGTAAATTTTGATTAATAAAGCAGCGATA  750

seq1  GCTTATTCAACTAAAAACTTCTTTTCTCTTATGTGTATTAGAAGTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCAACTAAAAACTTCTTTTCTCTTATGTGTATTAGAAGTTTTCA  800

seq1  ACTAACAATTTTAATAAGTATAAAATGTACATCTCCCATTAAAATTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAATTTTAATAAGTATAAAATGTACATCTCCCATTAAAATTTATT  850

seq1  TAAAATCAGGTTTATTTTCTAACTTAAAATTACTTCAGTAGATATTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGGTTTATTTTCTAACTTAAAATTACTTCAGTAGATATTAGTT  900

seq1  AGATATTTTAAAGAAAGATGTAATAAAAAGTAGCATACAGAATTTACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTAAAGAAAGATGTAATAAAAAGTAGCATACAGAATTTACTGT  950

seq1  GAAAGACATTCAGAACATAATTAAATTGAGAATTATGGGAAATGAGGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATTCAGAACATAATTAAATTGAGAATTATGGGAAATGAGGTCA  1000

seq1  TCTGTTGTAAACAGCCAACTTACAG-AATAAGAGAAAGCAAATCTT-ACA  1048
      ||||||||||||||||||||||||| |||| |||||||| |||||| |||
seq2  TCTGTTGTAAACAGCCAACTTACAGAAATAGGAGAAAGC-AATCTTAACA  1049

seq1  TTTGTCATGCAGCTAATATCTAG--AATACACAAGGGACTGAAGAA-TTT  1095
      ||||||||||||||| |  ||||  | |||||| |||||||||||| || 
seq2  TTTGTCATGCAGCTATTTCCTAGGAATTACACAGGGGACTGAAGAACTTA  1099

seq1  AAATAGCAATAAGAAACTAGATAATTT--GGCTAAAAAAATA---TGGGC  1140
      |||||||||||||||||||||||||||  | ||||||||| |   ||| |
seq2  AAATAGCAATAAGAAACTAGATAATTTTGGCCTAAAAAAAAAAATTGGCC  1149

seq1  -AATAGACCTAAACAGACTTTTCTCAAATGAGAACATAG-AAATGGACAA  1188
       |||| ||||||   ||| ||| |  ||||  ||||||| ||||||||||
seq2  AAATAAACCTAACATGACCTTTTTTTAATGGAAACATAGAAAATGGACAA  1199

seq1  C-AGGCCT  1195
      | ||||||
seq2  CAAGGCCT  1207


seq1: chr3_24576446_24576650
seq2: B6Ng01-211I05.g_72_276 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCA  50

seq1  GGGGTTTTTGTTGTTTGGGATCTTACACAGATTTTGATGTTTTAAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTTGTTGTTTGGGATCTTACACAGATTTTGATGTTTTAAGATTG  100

seq1  CAGCACTTCAGATTACAGGCTGATAGTGTATCTTTCAAGATTATACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTCAGATTACAGGCTGATAGTGTATCTTTCAAGATTATACTCAA  150

seq1  AAGTGACCAATGTTAGCTTTCCTTTAGAATCACAGCAAAATCATTCGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCAATGTTAGCTTTCCTTTAGAATCACAGCAAAATCATTCGTTG  200

seq1  ATGTG  205
      |||||
seq2  ATGTG  205


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