BAC Information

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BAC

Clone NameB6Ng01-211M08
Chromosome3 (Build37)
Map Location 76,156,473 - 76,342,912
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M08.bB6Ng01-211M08.g
ACCGA029738GA029739
length1,1301,111
definitionB6Ng01-211M08.b B6Ng01-211M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,341,809 - 76,342,912)(76,156,473 - 76,157,568)
sequence
gaattccacagagataactgtttgttttgaatttcttataatttgaattt
cttataataaggttatcattgatggtggatggggtttcatgtcagaggtc
tcttggattttgtttgtttgtttgtttgtttgttgtattttttttctatt
ctactttcaggaaaaaaaaaacttacatgaaagaacaaacacttcattca
caatagaggataaaacagggaacagcatggtacctgggtttgagtcctac
aacatagaaacccaaattttggctcaggtccttgaatttttcacctggca
ctcaatgactttctgaaagtagatgacattctgaataaaccagtgtcaga
gaggaacaaggaggaggaacccctgaagggcagccatgcagcctggttct
catgacctgaactcccacgtgttacaagctccctgcagcacagtctccag
cttgcctgggaaagccacactttccaaatagctgatgaagactggggatt
catagttttcatattttaaaataaagttctgacgaagatggaatatgaac
tgtttgttaaggaaggagcatgtggctagagtgaaagaaggagggctgag
attgacaggaagtggtgttaggagacaaaaattaactgcttgcaatagag
tgaagtagaacttttatgttttctttccacaaacagtaagaaagttccca
gagctagactggttgaagtcaattactggtaaaagggaaaaatgaatagg
ccttgctatgtcagttatactaggcctaatgtattttagactgtaagcac
ccacagaatggagtcaaccgggaaatatggctcaggggtctgtcaatccc
tgttcaagcacgtgaaattgcagagcatgccattgcttttgtgctcttca
caggattcccttggaaactgacttcaaactagagccaagtgcaagttttc
ctgctgagttttccccagaagtcacaggctgtaccctagtaactattgga
ggtgtcccaagaaccatcagactacccatgttttccagcactgttgttta
attaaatgtcttttttataaggtgaggtccttatggctaggcttcaaatt
cccttcccgatgtgaaatacatttcctgga

gaattctctctagaacattttcaaaacatactgatgtatccattcatttg
tttcctgtaataaattagctgtgttctatttatgtcaaccatgttctgct
ctatagttagtgtgcacatatttttaaagaagtagttgctctaggtgagg
aaaagagagaactaataaagaccaatggctaatggagtgatattatcctt
aaatactgtaacaactgttttattgcttcaataaccttcattctttgagg
atatctgactattcaaaatttaaaaagccagtaagagagagaaatatgca
ccaccacctgctgacacatagacacaaacacatatttcatgaaaagacat
gaaggaaacaaaaataaaatcaataaagtcacttttgtgctttttcagag
tcactatagcaataactctttgcaggatcaattgtgcagacttaaaagtg
cagtgttagtttttcaaaacacaatgatattctcagctaatagtgagcta
aaaataactgatgtatctatgttatttttaattaattaagtgtcatatat
atatatgaataaatatgatcacttgactattatttttctttatggctcag
ctgtttaggaaaacaaataaaaattatatagaaattgttttatacactta
aacttattatttttagactactataaagtttttaagttcaatttcccaaa
attattattattattattattattattattattattattattatcattat
tttaatcttttttacagttcatttgtaataccgcaaatttactttgaaaa
attcgaagatttgcttattctcaaaaccttgtgggtcatttaaatctttt
aactgatgggctatcttctagttgcatgatcccattaaagtcattcaaac
tttgtaataacagcaaagactttcaacagaacaatttcatctcttgtttg
gatcccatttttttttctagtcaggtaacagaaaattagatttttgggga
tgtttgagatatccaaacccagccataatatcagcttccctaaacttaaa
taatagggaatctctaacttctttttttttcttttgatgtggaaccattt
tatttaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76341809_76342912
seq2: B6Ng01-211M08.b_50_1179 (reverse)

seq1  TCCAGG-AATGTATT---CATACGGGAGGGAATTTGAAG-CTAG-CAT-A  43
      |||||| ||||||||   |||  || ||||||||||||| |||| ||| |
seq2  TCCAGGAAATGTATTTCACATCGGGAAGGGAATTTGAAGCCTAGCCATAA  50

seq1  GGA-CTCA-CTTAT-AAAAAGACA-TTAAT--AACAACAGTGCTGGAAAA  87
      ||| |||| ||||| ||||||||| |||||  ||||||||||||||||||
seq2  GGACCTCACCTTATAAAAAAGACATTTAATTAAACAACAGTGCTGGAAAA  100

seq1  CATGGGTAGTCTGATGGT--CTGGGACAC--TCAATAG-TACTA-GGTAC  131
      ||||||||||||||||||   ||||||||   |||||| ||||| |||||
seq2  CATGGGTAGTCTGATGGTTCTTGGGACACCTCCAATAGTTACTAGGGTAC  150

seq1  AGCCTGTGACTTCTGGGGAAAACTCAGCAGG-AAACTTGCAC-TGGCTCT  179
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AGCCTGTGACTTCTGGGGAAAACTCAGCAGGAAAACTTGCACTTGGCTCT  200

seq1  AGTTTGAAGTCAGTTTCCAAGGGAAT-CTGTGAAGAGCAC-AAAGCAATG  227
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  AGTTTGAAGTCAGTTTCCAAGGGAATCCTGTGAAGAGCACAAAAGCAATG  250

seq1  GCATGCTCTGC-ATTTCACGTGCTTTGAACA-GGATTGACAGACCCCTGA  275
      ||||||||||| ||||||||||| ||||||| ||||||||||||||||||
seq2  GCATGCTCTGCAATTTCACGTGC-TTGAACAGGGATTGACAGACCCCTGA  299

seq1  GCCATATTT-CCGGTTGACTCCATTCTGTGGGTGCTTACAGTCT-AAATA  323
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  GCCATATTTCCCGGTTGACTCCATTCTGTGGGTGCTTACAGTCTAAAATA  349

seq1  CATTAGGCCTAGTATAACTGACATAGCAAGGCCTATTCATTTTTCCCTTT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCTAGTATAACTGACATAGCAAGGCCTATTCATTTTTCCCTTT  399

seq1  TACCAGTAATTGACTTCAACCAGTCTAGCTCTGGGAACTTTCTTACTGTT  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTAATTGACTTCAACCAGTCTAGCTCTGGGAACTTTCTTACTGTT  449

seq1  TGTGGAAAGAAAACATAAAAGTTCTACTTCACTCTATTGCAAGCAGTTAA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGAAAACATAAAAGTTCTACTTCACTCTATTGCAAGCAGTTAA  499

seq1  TTTTTGTCTCCTAACACCACTTCCTGTCAATCTCAGCCCTCCTTCTTTCA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTCCTAACACCACTTCCTGTCAATCTCAGCCCTCCTTCTTTCA  549

seq1  CTCTAGCCACATGCTCCTTCCTTAACAAACAGTTCATATTCCATCTTCGT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCACATGCTCCTTCCTTAACAAACAGTTCATATTCCATCTTCGT  599

seq1  CAGAACTTTATTTTAAAATATGAAAACTATGAATCCCCAGTCTTCATCAG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTTATTTTAAAATATGAAAACTATGAATCCCCAGTCTTCATCAG  649

seq1  CTATTTGGAAAGTGTGGCTTTCCCAGGCAAGCTGGAGACTGTGCTGCAGG  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGAAAGTGTGGCTTTCCCAGGCAAGCTGGAGACTGTGCTGCAGG  699

seq1  GAGCTTGTAACACGTGGGAGTTCAGGTCATGAGAACCAGGCTGCATGGCT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTAACACGTGGGAGTTCAGGTCATGAGAACCAGGCTGCATGGCT  749

seq1  GCCCTTCAGGGGTTCCTCCTCCTTGTTCCTCTCTGACACTGGTTTATTCA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAGGGGTTCCTCCTCCTTGTTCCTCTCTGACACTGGTTTATTCA  799

seq1  GAATGTCATCTACTTTCAGAAAGTCATTGAGTGCCAGGTGAAAAATTCAA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCATCTACTTTCAGAAAGTCATTGAGTGCCAGGTGAAAAATTCAA  849

seq1  GGACCTGAGCCAAAATTTGGGTTTCTATGTTGTAGGACTCAAACCCAGGT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGCCAAAATTTGGGTTTCTATGTTGTAGGACTCAAACCCAGGT  899

seq1  ACCATGCTGTTCCCTGTTTTATCCTCTATTGTGAATGAAGTGTTTGTTCT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTGTTCCCTGTTTTATCCTCTATTGTGAATGAAGTGTTTGTTCT  949

seq1  TTCATGTAAGTTTTTTTTTTCCTGAAAGTAGAATAGAAAAAAAATACAAC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAAGTTTTTTTTTTCCTGAAAGTAGAATAGAAAAAAAATACAAC  999

seq1  AAACAAACAAACAAACAAACAAAATCCAAGAGACCTCTGACATGAAACCC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAAATCCAAGAGACCTCTGACATGAAACCC  1049

seq1  CATCCACCATCAATGATAACCTTATTATAAGAAATTCAAATTATAAGAAA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCATCAATGATAACCTTATTATAAGAAATTCAAATTATAAGAAA  1099

seq1  TTCAAAACAAACAGTTATCTCTGTGGAATTC  1104
      |||||||||||||||||||||||||||||||
seq2  TTCAAAACAAACAGTTATCTCTGTGGAATTC  1130


seq1: chr3_76156473_76157568
seq2: B6Ng01-211M08.g_69_1179

seq1  GAATTCTCTCTAGAACATTTTCAAAACATACTGATGTATCCATTCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAGAACATTTTCAAAACATACTGATGTATCCATTCATTTG  50

seq1  TTTCCTGTAATAAATTAGCTGTGTTCTATTTATGTCAACCATGTTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTAATAAATTAGCTGTGTTCTATTTATGTCAACCATGTTCTGCT  100

seq1  CTATAGTTAGTGTGCACATATTTTTAAAGAAGTAGTTGCTCTAGGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTAGTGTGCACATATTTTTAAAGAAGTAGTTGCTCTAGGTGAGG  150

seq1  AAAAGAGAGAACTAATAAAGACCAATGGCTAATGGAGTGATATTATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAACTAATAAAGACCAATGGCTAATGGAGTGATATTATCCTT  200

seq1  AAATACTGTAACAACTGTTTTATTGCTTCAATAACCTTCATTCTTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGTAACAACTGTTTTATTGCTTCAATAACCTTCATTCTTTGAGG  250

seq1  ATATCTGACTATTCAAAATTTAAAAAGCCAGTAAGAGAGAGAAATATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGACTATTCAAAATTTAAAAAGCCAGTAAGAGAGAGAAATATGCA  300

seq1  CCACCACCTGCTGACACATAGACACAAACACATATTTCATGAAAAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCTGCTGACACATAGACACAAACACATATTTCATGAAAAGACAT  350

seq1  GAAGGAAACAAAAATAAAATCAATAAAGTCACTTTTGTGCTTTTTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAACAAAAATAAAATCAATAAAGTCACTTTTGTGCTTTTTCAGAG  400

seq1  TCACTATAGCAATAACTCTTTGCAGGATCAATTGTGCAGACTTAAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATAGCAATAACTCTTTGCAGGATCAATTGTGCAGACTTAAAAGTG  450

seq1  CAGTGTTAGTTTTTCAAAACACAATGATATTCTCAGCTAATAGTGAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAGTTTTTCAAAACACAATGATATTCTCAGCTAATAGTGAGCTA  500

seq1  AAAATAACTGATGTATCTATGTTATTTTTAATTAATTAAGTGTCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACTGATGTATCTATGTTATTTTTAATTAATTAAGTGTCATATAT  550

seq1  ATATATGAATAAATATGATCACTTGACTATTATTTTTCTTTATGGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAATAAATATGATCACTTGACTATTATTTTTCTTTATGGCTCAG  600

seq1  CTGTTTAGGAAAACAAATAAAAATTATATAGAAATTGTTTTATACACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGGAAAACAAATAAAAATTATATAGAAATTGTTTTATACACTTA  650

seq1  AACTTATTATTTTTAGACTACTATAAAGTTTTTAAGTTCAATTTCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTATTTTTAGACTACTATAAAGTTTTTAAGTTCAATTTCCCAAA  700

seq1  ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTA-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTAT  750

seq1  TTTAATCTTTTTTACAGTTCATTTGTAATACCGCAAA-TTACTTTGAAAA  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTAATCTTTTTTACAGTTCATTTGTAATACCGCAAATTTACTTTGAAAA  800

seq1  ATTCGAAGATTTGCTTATTCTCAAAACCTTGT-GGTCATTTAAATC-TTT  846
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  ATTCGAAGATTTGCTTATTCTCAAAACCTTGTGGGTCATTTAAATCTTTT  850

seq1  AACTGAT-GGCTATCTTCTAGTTGCATGAT-CCATT-AAGTCATTCAAAC  893
      ||||||| |||||||||||||||||||||| ||||| |||||||||||||
seq2  AACTGATGGGCTATCTTCTAGTTGCATGATCCCATTAAAGTCATTCAAAC  900

seq1  -TTGTAATAAACAGCAAAGACTTTCAACAGAACAA-TTCATCTCTTG-TT  940
       ||||||| |||||||||||||||||||||||||| ||||||||||| ||
seq2  TTTGTAAT-AACAGCAAAGACTTTCAACAGAACAATTTCATCTCTTGTTT  949

seq1  GGATCC---ATTTTTTTCTAGTCA-GTTACAG-AAATTAGATTTT--GGG  983
      ||||||    |||||||||||||| || |||| ||||||||||||  |||
seq2  GGATCCCATTTTTTTTTCTAGTCAGGTAACAGAAAATTAGATTTTTGGGG  999

seq1  ATGTTTGAGATAT-CAAACCCAGCCAT-ATATCAGCTTCC--TAACTTAA  1029
      ||||||||||||| ||||||||||||| ||||||||||||   |||||||
seq2  ATGTTTGAGATATCCAAACCCAGCCATAATATCAGCTTCCCTAAACTTAA  1049

seq1  AATATAGGGAATCTCTTAACTTCTTTTTTTTTCCTTTTTGATGTTGAAAA  1079
      |  |||||||||||| |||||||||||||||||  ||||||||| |  ||
seq2  ATAATAGGGAATCTC-TAACTTCTTTTTTTTTC--TTTTGATGTGG--AA  1094

seq1  CATTTTTATTTTATTAA  1096
      |  |||||||| |||||
seq2  CCATTTTATTTAATTAA  1111


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