BAC Information

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BAC

Clone NameB6Ng01-211M18
Chromosome3 (Build37)
Map Location 62,125,378 - 62,222,601
singlet/doubletdoublet
Overlap gene4631416L12Rik
Upstream geneRap2b, LOC666891, LOC669910, LOC676965
Downstream geneDhx36, Gpr149, LOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M18.bB6Ng01-211M18.g
ACCGA029758GA029759
length1,2041,103
definitionB6Ng01-211M18.b B6Ng01-211M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,125,378 - 62,126,565)(62,221,514 - 62,222,601)
sequence
gaattccctcaataatagacaatagctggtacactgaaataaacactttg
tttccttaaattgcttggtcacaatgttttgtcatagcagtagagaagta
gctagaatattactgggctaaaatagaaggtacagaataacagatctgct
tctaatatggatggtgctatacatcgggccacaggaaagcgctatttaaa
tttaattttcttatttgaaaattagtatgacaggtgggttaattatattc
tctcttataatctggaaagccagccctgtaaagtcatgtaaattgtgtgt
tctacactgttgatgagtgtgctatactagagttaatgtgtgttaaaatg
aatgagggagagacactggaagtgggagtgggaaatgtctcccccacaca
caagttacatggctaatacacatctgggaaggagaagagaagatataaag
ggtagaactacaacatgaatttagaaaatatctctgatagcctcaaaaat
tgccactttgtcgaggaagctgctgagtacttcataacatcaatcctagt
aatacataagtacactttagcctcccagcatcccatctgaatatctagac
cactctggaccagttctcaggggaaagatgagcctggcaggaaggacaca
gatgattttgttagaaccgcatactgttgacccataaaatatttaaaatt
tttgaattatgcacacaagtttgtaaattgtgaggttttttttttccatt
aaaattcaggtttccagattctcttaaagccagaatctccctcggataat
gttaagcacacatttctccacagtagtaataaacaagctaaaagccatct
gttgcatttcccaagcttctgcagactaacttgaaagcagttttgcatag
tccagctactcttctgccccaatgtactcatgagtatgcaccattatcct
agacaatgttcctggtttgcatctgccctgtccactgggctcatcacact
cctcaatggtggccaacaactgaaccttggggagagtggcccgccactac
acaagccaacaagttgtggatttccgagtaaggaccatatgcatatccaa
gtcagccttcctagactctatcctggccattgccagcctgactttcctca
ttaagcaaaaaaattgaactccatattccttattaaatagatttaatgcc
aatt

gaattcagtaataagagtgtgtctacagagacatgaccatttacaaccat
gagccggtacaaaagattctgggttatatgccagggaacattgactcact
aaaaggaagttaaataatatacaacccttcccctgatagtgactggtgag
aatcatgggacaattacaataaagcagagatgtggcaggataaaaataat
aatattgatacagacttggtttcctttccattcccagttgttttgttttt
ttccttttggaacatggatttttaaatccttgggacctccataccaatag
tgtctctcatgatgagtgggcacgtggaggctggggaggcctaggtaggt
agagaatgcaggctgacagccagagaagctaagccacgttttcaaagttg
gaattttcagtgtctcccctccctcgccttcaaggagaaatgacagcagg
tttccggttgatttagcaagggcctatcatctagtgtgtctatacaatga
cacctttacaaagacccttaaccaatgagtttctgagaggaatgaacatg
ctgagtgctggttggccagcctggagagggcatggaggttgtgtcgcatg
ctccatcccttgcactaagcagctcttcctttgtctctccctgaaatgtc
ttccttcttaatgagctagtgatgatgctaaaaatgccgtcctgcactct
gtgggctgctctagcaaaccggccaacaagaaagagcgtaggtttgaagg
aaccccgactttgtagtaagacagaggtaatgataacaggagacccagta
agaactccaaagttgaggtggctaactaaatgtatgggtgaggaggccat
gaggtgggtcagtcatctgtgaatataagatggtacaatggagaagagga
gagagagccacatgctatatagtcttctcgttcaggaaatggggagttta
tgaggctgaaatggcgaatccgcagattaagtaaggcagaacagagaagc
cctgcagaacagatgagcccttagaccggcaaaccttggcttgtgtgtac
cccaagaattactgtcaggatggaaggccaagtaagtcattcaatccatg
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62125378_62126565
seq2: B6Ng01-211M18.b_50_1253

seq1  GAATTCCCTCAATAATAGACAATAGCTGGTACACTGAAATAAACACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAATAATAGACAATAGCTGGTACACTGAAATAAACACTTTG  50

seq1  TTTCCTTAAATTGCTTGGTCACAATGTTTTGTCATAGCAGTAGAGAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAATTGCTTGGTCACAATGTTTTGTCATAGCAGTAGAGAAGTA  100

seq1  GCTAGAATATTACTGGGCTAAAATAGAAGGTACAGAATAACAGATCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATATTACTGGGCTAAAATAGAAGGTACAGAATAACAGATCTGCT  150

seq1  TCTAATATGGATGGTGCTATACATCGGGCCACAGGAAAGCGCTATTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATGGATGGTGCTATACATCGGGCCACAGGAAAGCGCTATTTAAA  200

seq1  TTTAATTTTCTTATTTGAAAATTAGTATGACAGGTGGGTTAATTATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCTTATTTGAAAATTAGTATGACAGGTGGGTTAATTATATTC  250

seq1  TCTCTTATAATCTGGAAAGCCAGCCCTGTAAAGTCATGTAAATTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATAATCTGGAAAGCCAGCCCTGTAAAGTCATGTAAATTGTGTGT  300

seq1  TCTACACTGTTGATGAGTGTGCTATACTAGAGTTAATGTGTGTTAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTGTTGATGAGTGTGCTATACTAGAGTTAATGTGTGTTAAAATG  350

seq1  AATGAGGGAGAGACACTGGAAGTGGGAGTGGGAAATGTCTCCCCCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGAGAGACACTGGAAGTGGGAGTGGGAAATGTCTCCCCCACACA  400

seq1  CAAGTTACATGGCTAATACACATCTGGGAAGGAGAAGAGAAGATATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACATGGCTAATACACATCTGGGAAGGAGAAGAGAAGATATAAAG  450

seq1  GGTAGAACTACAACATGAATTTAGAAAATATCTCTGATAGCCTCAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAACTACAACATGAATTTAGAAAATATCTCTGATAGCCTCAAAAAT  500

seq1  TGCCACTTTGTCGAGGAAGCTGCTGAGTACTTCATAACATCAATCCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTTGTCGAGGAAGCTGCTGAGTACTTCATAACATCAATCCTAGT  550

seq1  AATACATAAGTACACTTTAGCCTCCCAGCATCCCATCTGAATATCTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAGTACACTTTAGCCTCCCAGCATCCCATCTGAATATCTAGAC  600

seq1  CACTCTGGACCAGTTCTCAGGGGAAAGATGAGCCTGGCAGGAAGGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGACCAGTTCTCAGGGGAAAGATGAGCCTGGCAGGAAGGACACA  650

seq1  GATGATTTTGTTAGAACCGCATACTGTTGACCCATAAAATATTTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTGTTAGAACCGCATACTGTTGACCCATAAAATATTTAAAATT  700

seq1  TTTGAATTATGCACACAAGTTTGTAAATTGTGAGGTTTTTTTTTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTATGCACACAAGTTTGTAAATTGTGAGGTTTTTTTTTTCCATT  750

seq1  AAAATTCAGGTTTCCAGATTCTCTTAAAGCCAGAATCTCCCTCGGATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGGTTTCCAGATTCTCTTAAAGCCAGAATCTCCCTCGGATAAT  800

seq1  GTTAAGCACACATTTCTCCACAGTAGTAATAAACAAGCTAAAAGCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCACACATTTCTCCACAGTAGTAATAAACAAGCTAAAAGCCATCT  850

seq1  GTTGCATTTCCCAAGCTTCTGCAGACTAACT--GAAGCAG-TTTGCATAG  897
      |||||||||||||||||||||||||||||||   |||||| |||||||||
seq2  GTTGCATTTCCCAAGCTTCTGCAGACTAACTTGAAAGCAGTTTTGCATAG  900

seq1  TCCAGCTAC-CTTCTGCCCCAATGTACTCATGAGTATGCACCATTATCCT  946
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTACTCTTCTGCCCCAATGTACTCATGAGTATGCACCATTATCCT  950

seq1  AGACAATG-TCCTGGTTTTGCATCTG-CCTGTCCACTGGGCTCATCACAC  994
      |||||||| |||||| |||||||||| |||||||||||||||||||||||
seq2  AGACAATGTTCCTGG-TTTGCATCTGCCCTGTCCACTGGGCTCATCACAC  999

seq1  T-CTCAAT-GTGG-CAACAACTGAA-CTTTGGGAGAGTGGCCCGCCACTA  1040
      | |||||| |||| ||||||||||| ||| ||||||||||||||||||||
seq2  TCCTCAATGGTGGCCAACAACTGAACCTTGGGGAGAGTGGCCCGCCACTA  1049

seq1  CACAAGGCAACAAGTTGT-GAATTCCGAGT-AGGA-CATAAGCATATCCA  1087
      |||||| ||||||||||| || |||||||| |||| |||| |||||||| 
seq2  CACAAGCCAACAAGTTGTGGATTTCCGAGTAAGGACCATATGCATATCC-  1098

seq1  AAGTCAGCC-TCCCAGACT-TAT-CTG--CACTGCCAG-CTGAATTTCCT  1131
      ||||||||| ||| ||||| ||| |||  || |||||| |||| ||||||
seq2  AAGTCAGCCTTCCTAGACTCTATCCTGGCCATTGCCAGCCTGACTTTCCT  1148

seq1  CATAAAGC-AGAAAATGGAAAACTCATTTTCCCTTTTATTAAATAG-TTT  1179
      ||| |||| | ||||| |||  | ||| ||||   ||||||||||| |||
seq2  CATTAAGCAAAAAAATTGAACTC-CATATTCC---TTATTAAATAGATTT  1194

seq1  AATG-CAATT  1188
      |||| |||||
seq2  AATGCCAATT  1204


seq1: chr3_62221514_62222601
seq2: B6Ng01-211M18.g_67_1169 (reverse)

seq1  GTCCATGG-TTG-ATGACTTACT--GGCTTCCATCCTG-CAGTAATTCTT  45
      |||||||| ||| ||||||||||  | ||||||||||| |||||||||||
seq2  GTCCATGGATTGAATGACTTACTTGGCCTTCCATCCTGACAGTAATTCTT  50

seq1  GGGGT-CACAC-AGCCAA-GTTTGCC-GTCT-AGGGCTCATCTGTTCTGC  90
      ||||| ||||| |||||| ||||||| |||| ||||||||||||||||||
seq2  GGGGTACACACAAGCCAAGGTTTGCCGGTCTAAGGGCTCATCTGTTCTGC  100

seq1  A-GGCTTCTCTG-TCTGCC-TACTTATTCTGCGG-TTCG-CATTTCAGCC  135
      | |||||||||| |||||| |||||| ||||||| |||| ||||||||||
seq2  AGGGCTTCTCTGTTCTGCCTTACTTAATCTGCGGATTCGCCATTTCAGCC  150

seq1  TCATAAACTCCCCATTTCCTGAACGAG-AGACTATATAGCATGTGGCTCT  184
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCATAAACTCCCCATTTCCTGAACGAGAAGACTATATAGCATGTGGCTCT  200

seq1  CTCTCCTCTTCTCCCATTGTACCATCTTATATTCACAGATGACTGACCCA  234
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTTCT-CCATTGTACCATCTTATATTCACAGATGACTGACCCA  249

seq1  CCTCATGGCCTCCTCACCCATACATTTAGTTAGCCACCTCAACTTTGGAG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGCCTCCTCACCCATACATTTAGTTAGCCACCTCAACTTTGGAG  299

seq1  TTCTTACTGGGTCTCCTGTTATCATTACCTCTGTCTTACTACAAAGTCGG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGGGTCTCCTGTTATCATTACCTCTGTCTTACTACAAAGTCGG  349

seq1  GGTTCCTTCAAACCTACGCTCTTTCTTGTTGGCCGGTTTGCTAGAGCAGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCAAACCTACGCTCTTTCTTGTTGGCCGGTTTGCTAGAGCAGC  399

seq1  CCACAGAGTGCAGGACGGCATTTTTAGCATCATCACTAGCTCATTAAGAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGTGCAGGACGGCATTTTTAGCATCATCACTAGCTCATTAAGAA  449

seq1  GGAAGACATTTCAGGGAGAGACAAAGGAAGAGCTGCTTAGTGCAAGGGAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACATTTCAGGGAGAGACAAAGGAAGAGCTGCTTAGTGCAAGGGAT  499

seq1  GGAGCATGCGACACAACCTCCATGCCCTCTCCAGGCTGGCCAACCAGCAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGCGACACAACCTCCATGCCCTCTCCAGGCTGGCCAACCAGCAC  549

seq1  TCAGCATGTTCATTCCTCTCAGAAACTCATTGGTTAAGGGTCTTTGTAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTTCATTCCTCTCAGAAACTCATTGGTTAAGGGTCTTTGTAAA  599

seq1  GGTGTCATTGTATAGACACACTAGATGATAGGCCCTTGCTAAATCAACCG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATTGTATAGACACACTAGATGATAGGCCCTTGCTAAATCAACCG  649

seq1  GAAACCTGCTGTCATTTCTCCTTGAAGGCGAGGGAGGGGAGACACTGAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGCTGTCATTTCTCCTTGAAGGCGAGGGAGGGGAGACACTGAAA  699

seq1  ATTCCAACTTTGAAAACGTGGCTTAGCTTCTCTGGCTGTCAGCCTGCATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTTTGAAAACGTGGCTTAGCTTCTCTGGCTGTCAGCCTGCATT  749

seq1  CTCTACCTACCTAGGCCTCCCCAGCCTCCACGTGCCCACTCATCATGAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTACCTAGGCCTCCCCAGCCTCCACGTGCCCACTCATCATGAGA  799

seq1  GACACTATTGGTATGGAGGTCCCAAGGATTTAAAAATCCATGTTCCAAAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATTGGTATGGAGGTCCCAAGGATTTAAAAATCCATGTTCCAAAA  849

seq1  GGAAAAAAACAAAACAACTGGGAATGGAAAGGAAACCAAGTCTGTATCAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAACAAAACAACTGGGAATGGAAAGGAAACCAAGTCTGTATCAA  899

seq1  TATTATTATTTTTATCCTGCCACATCTCTGCTTTATTGTAATTGTCCCAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTTTTATCCTGCCACATCTCTGCTTTATTGTAATTGTCCCAT  949

seq1  GATTCTCACCAGTCACTATCAGGGGAAGGGTTGTATATTATTTAACTTCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCACCAGTCACTATCAGGGGAAGGGTTGTATATTATTTAACTTCC  999

seq1  TTTTAGTGAGTCAATGTTCCCTGGCATATAACCCAGAATCTTTTGTACCG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGAGTCAATGTTCCCTGGCATATAACCCAGAATCTTTTGTACCG  1049

seq1  GCTCATGGTTGTAAATGGTCATGTCTCTGTAGACACACTCTTATTACTGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTTGTAAATGGTCATGTCTCTGTAGACACACTCTTATTACTGA  1099

seq1  ATTC  1088
      ||||
seq2  ATTC  1103


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