BAC Information

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BAC

Clone NameB6Ng01-212B20
Chromosome3 (Build37)
Map Location 25,196,725 - 25,333,109
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneEG635702, EG665189, LOC100039592
Downstream geneLOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212B20.bB6Ng01-212B20.g
ACCGA029995GA029996
length1,1531,145
definitionB6Ng01-212B20.b B6Ng01-212B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,331,960 - 25,333,109)(25,196,725 - 25,197,891)
sequence
gaattccacaccagtcacatcagcctttcccactgccaaacaggatgatc
ccaagcaacaaccaagccccttctcggtggatcagagggactactccaca
gagctaagtgtcactatcgcagtgggggcctctctgctgtttctcaacat
cttggcttttgcagccctgtactacaagaaggataagaggagacatgatg
tccaccggaggtgcagccctcagcgcacgaccaccaacgacctaacccat
gctccagaagaggaaattatgtctctccaaatgaagcacactgacttgga
tcacgagtgtgagtccatccatccacatgaggtggttcttcggaccgcct
gtcccccagattatactctagctatgaggaggtcacctgatgatattcca
ctaatgacacctaacaccatcacaatgattcccaacactataccagggat
tcagcccttacatacattcaacacatttactggaggacagaataatacac
tgccccatccccacccacacccccattcacattcaacaaccagggtatag
ccagatgagagagacaaactgatttttttttctgatggagtgcagtaaaa
gattattggaagattccttggctttcaactcggaagactctcactattta
aataaggaggaatattatgtgaatatacatatcaagaactttgggggttt
tgaaaaatgaattgtatatagatatacacacaaatcaactttaaaaaaaa
aagcaaattccaattgcgtgaagcaattgttctgaatgatactttttcat
tcactttcaagaattaatttgttgaagatttaagttacttaaacggagtt
aggcatgtggaacaccaaacaggaaagtactgtgtctgaatactttaaaa
acaaacaaaaaacaaaacaaaaacaaaaataaatcaactatgaatatgca
caagggacacaccaatggaatgtcagataatttcgtcaagtttcatttgg
agctcctttaattgttgtagaccatatttgcttaagtacaccaggacacc
tatgcctgttatgcaatagcagaagtttcattgctgaaatgcagtaaaca
aaggaagttggccataaggactgcaagtacaacattattcacatagttgc
tgt
gaattcttgatcctctttaagctaccctaataagtattgtatattttgaa
ttttctaatgagtaattcctagcttgactctcaaaccattctcctgtttc
ttcttgctatggctgcaaaaaaattctgattgcttgtcttcccatagcca
ccagtgccctattttctttcttcacacatctgagctgtatttggaggcac
cgggaagtctttcatttgatgatcttcagaaccacaattaaaacagcaag
gtgctgatctttttgcctttcctttttttctatcacttttaggaaaacaa
tggacaaaaattttcctgacaattggttagctcctttgttttagtaaaca
gaatctctttagcattagttgccatattttatcatggcattatttctaaa
atgcagagtgtttcctatcttactaaaaatgtcccttttgttctaaatgg
caaaaagtaattgcctctttaatggcctacttctgacacagttttgaatg
attgagacaaaagattagagggaatctttcccatttaatttttatacact
aattcaaatattttctcttaatttgatcagtttctctatttttgaatgtg
attttattgatataatattattcagaaataaaaactttaataaagtccat
ttggcacaattttgttcatcaattttcttccaagctatagattctcagtg
tcaagccgttctctggtttatcactctgtggatctgcattgttgatctcc
atccacctcttccttgtttccttgacatggggtgagtgggctttacagtc
tctgtcccttgaatttgcttccatcatcctcaatatcaaggccagttgcc
acttgtatttatcagctttcaactctggagtaggatgagtgtagattgta
gtccagtatggtaaaacacttattatttcagagctaaatctcactatctc
attttttttcatttagtatctactctctgtattatgtgatgaattcttta
aaaaaaacactatttttttaaagcgttttttgtacacaaagtgagttatt
ctagaagattataagtgttgatttgttggtttgctaccggtcatgtgacc
ttagaagctggatctgctttatgtgaccagaaatattttgtaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25331960_25333109
seq2: B6Ng01-212B20.b_46_1198 (reverse)

seq1  ACAGCACTTATGTG-ATAATGTTGTACCTGCCAGT-CTTATGG-CAACTT  47
      ||||||  |||||| |||||||||||| || |||| ||||||| ||||||
seq2  ACAGCAACTATGTGAATAATGTTGTACTTG-CAGTCCTTATGGCCAACTT  49

seq1  CTTTGTTTTACTGGCAATTTTCAGC-ATG-AACTTCTGCTATGCCATTAA  95
      | ||  |||||| |||  ||||||| ||| ||||||||||||  || |||
seq2  CCTTTGTTTACT-GCA--TTTCAGCAATGAAACTTCTGCTATTGCA-TAA  95

seq1  CA-GCATAGGTGTCCT-GTGTACTTAAGCAAATATGGTCTAC-ACAATTA  142
      || ||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CAGGCATAGGTGTCCTGGTGTACTTAAGCAAATATGGTCTACAACAATTA  145

seq1  AAGG-GCTCCAAATGAAAACTGGCGAAATTATCTGACATTCCATTGGTGT  191
      |||| |||||||||||||  || |||||||||||||||||||||||||||
seq2  AAGGAGCTCCAAATGAAACTTGACGAAATTATCTGACATTCCATTGGTGT  195

seq1  GTCCCTTGTGCATATTCATAGTTGATTTTATTTTTGTTTTTGTTTTTGTT  241
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GTCCCTTGTGCATATTCATAGTTGA-TTTATTTTTGTTTTTG-TTTTGTT  243

seq1  TTTTGTTTGTTTTTAAAGTATTCAGACACAGTACTTTCCTGTTTGGTGTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTTAAAGTATTCAGACACAGTACTTTCCTGTTTGGTGTT  293

seq1  CCACATGCCTAACTCCG-TTAAGTAACTTAAATCTTCAACAAATTAATTC  340
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCACATGCCTAACTCCGTTTAAGTAACTTAAATCTTCAACAAATTAATTC  343

seq1  TTGAAAGTGAATGAAAAAGTATCATTCAGAACAATTGCTTCACGCAATTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTGAATGAAAAAGTATCATTCAGAACAATTGCTTCACGCAATTG  393

seq1  GAATTTGCTTTTTTTTTTAAAGTTGATTTGTGTGTATATCTATATACAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCTTTTTTTTTTAAAGTTGATTTGTGTGTATATCTATATACAAT  443

seq1  TCATTTTTCAAAACCCCCAAAGTTCTTGATATGTATATTCACATAATATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCAAAACCCCCAAAGTTCTTGATATGTATATTCACATAATATT  493

seq1  CCTCCTTATTTAAATAGTGAGAGTCTTCCGAGTTGAAAGCCAAGGAATCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTATTTAAATAGTGAGAGTCTTCCGAGTTGAAAGCCAAGGAATCT  543

seq1  TCCAATAATCTTTTACTGCACTCCATCAGAAAAAAAAATCAGTTTGTCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAATCTTTTACTGCACTCCATCAGAAAAAAAAATCAGTTTGTCTC  593

seq1  TCTCATCTGGCTATACCCTGGTTGTTGAATGTGAATGGGGGTGTGGGTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTGGCTATACCCTGGTTGTTGAATGTGAATGGGGGTGTGGGTGG  643

seq1  GGATGGGGCAGTGTATTATTCTGTCCTCCAGTAAATGTGTTGAATGTATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCAGTGTATTATTCTGTCCTCCAGTAAATGTGTTGAATGTATG  693

seq1  TAAGGGCTGAATCCCTGGTATAGTGTTGGGAATCATTGTGATGGTGTTAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGAATCCCTGGTATAGTGTTGGGAATCATTGTGATGGTGTTAG  743

seq1  GTGTCATTAGTGGAATATCATCAGGTGACCTCCTCATAGCTAGAGTATAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTAGTGGAATATCATCAGGTGACCTCCTCATAGCTAGAGTATAA  793

seq1  TCTGGGGGACAGGCGGTCCGAAGAACCACCTCATGTGGATGGATGGACTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGACAGGCGGTCCGAAGAACCACCTCATGTGGATGGATGGACTC  843

seq1  ACACTCGTGATCCAAGTCAGTGTGCTTCATTTGGAGAGACATAATTTCCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGTGATCCAAGTCAGTGTGCTTCATTTGGAGAGACATAATTTCCT  893

seq1  CTTCTGGAGCATGGGTTAGGTCGTTGGTGGTCGTGCGCTGAGGGCTGCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGCATGGGTTAGGTCGTTGGTGGTCGTGCGCTGAGGGCTGCAC  943

seq1  CTCCGGTGGACATCATGTCTCCTCTTATCCTTCTTGTAGTACAGGGCTGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTGGACATCATGTCTCCTCTTATCCTTCTTGTAGTACAGGGCTGC  993

seq1  AAAAGCCAAGATGTTGAGAAACAGCAGAGAGGCCCCCACTGCGATAGTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAGATGTTGAGAAACAGCAGAGAGGCCCCCACTGCGATAGTGA  1043

seq1  CACTTAGCTCTGTGGAGTAGTCCCTCTGATCCACCGAGAAGGGGCTTGGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCTCTGTGGAGTAGTCCCTCTGATCCACCGAGAAGGGGCTTGGT  1093

seq1  TGTTGCTTGGGATCATCCTGTTTGGCAGTGGGAAAGGCTGATGTGACTGG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGGGATCATCCTGTTTGGCAGTGGGAAAGGCTGATGTGACTGG  1143

seq1  TGTGGAATTC  1150
      ||||||||||
seq2  TGTGGAATTC  1153

seq1: chr3_25196725_25197891
seq2: B6Ng01-212B20.g_65_1209

seq1  GAATTCTTGATCCTCTTTAAGCTACCCTAATAAGTATTGTATATTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCCTCTTTAAGCTACCCTAATAAGTATTGTATATTTTGAA  50

seq1  TTTTCTAATGAGTAATTCCTAGCTTGACTCTCAAACCATTCTCCTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATGAGTAATTCCTAGCTTGACTCTCAAACCATTCTCCTGTTTC  100

seq1  TTCTTGCTATGGCTGCAAAAAAATTCTGATTGCTTGTCTTCCCATAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTATGGCTGCAAAAAAATTCTGATTGCTTGTCTTCCCATAGCCA  150

seq1  CCAGTGCCCTATTTTCTTTCTTCACACATCTGAGCTGTATTTGGAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCCTATTTTCTTTCTTCACACATCTGAGCTGTATTTGGAGGCAC  200

seq1  CGGGAAGTCTTTCATTTGATGATCTTCAGAACCACAATTAAAACAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGTCTTTCATTTGATGATCTTCAGAACCACAATTAAAACAGCAAG  250

seq1  GTGCTGATCTTTTTGCCTTTCCTTTTTTTCTATCACTTTTAGGAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATCTTTTTGCCTTTCCTTTTTTTCTATCACTTTTAGGAAAACAA  300

seq1  TGGACAAAAATTTTCCTGACAATTGGTTAGCTCCTTTGTTTTAGTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAATTTTCCTGACAATTGGTTAGCTCCTTTGTTTTAGTAAACA  350

seq1  GAATCTCTTTAGCATTAGTTGCCATATTTTATCATGGCATTATTTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTTTAGCATTAGTTGCCATATTTTATCATGGCATTATTTCTAAA  400

seq1  ATGCAGAGTGTTTCCTATCTTACTAAAAATGTCCCTTTTGTTCTAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGTGTTTCCTATCTTACTAAAAATGTCCCTTTTGTTCTAAATGG  450

seq1  CAAAAAGTAATTGCCTCTTTAATGGCCTACTTCTGACACAGTTTTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTAATTGCCTCTTTAATGGCCTACTTCTGACACAGTTTTGAATG  500

seq1  ATTGAGACAAAAGATTAGAGGGAATCTTTCCCATTTAATTTTTATACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACAAAAGATTAGAGGGAATCTTTCCCATTTAATTTTTATACACT  550

seq1  AATTCAAATATTTTCTCTTAATTTGATCAGTTTCTCTATTTTTGAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATATTTTCTCTTAATTTGATCAGTTTCTCTATTTTTGAATGTG  600

seq1  ATTTTATTGATATAATATTATTCAGAAATAAAAACTTTAATAAAGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGATATAATATTATTCAGAAATAAAAACTTTAATAAAGTCCAT  650

seq1  TTGGCACAATTTTGTTCATCAATTTTCTTCCAAGCTATAGATTCTCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAATTTTGTTCATCAATTTTCTTCCAAGCTATAGATTCTCAGTG  700

seq1  TCAAGCCGTTCTCTGGTTTATCACTCTGTGGATCTGCATTGTTGATCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCGTTCTCTGGTTTATCACTCTGTGGATCTGCATTGTTGATCTCC  750

seq1  ATCCACCTCTTCCTTGTTTCCTTGACATGGGGTGAGTGGGCTTTACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTCTTCCTTGTTTCCTTGACATGGGGTGAGTGGGCTTTACAGTC  800

seq1  TCTGTCCCTTGAATTTGCTTCCATCATCCTCAATATCAAGGCCAGTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTGAATTTGCTTCCATCATCCTCAATATCAAGGCCAGTTGCC  850

seq1  ACTTGTATTTATCAGCTTTCAACTCTGGAGTAGGATGAGTGTAGATTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTTATCAGCTTTCAACTCTGGAGTAGGATGAGTGTAGATTGTA  900

seq1  GTCCAGTATGGTAAAACACTTATTATTTCAGGAGCTAAATCTCACTATCT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCCAGTATGGTAAAACACTTATTATTTCA-GAGCTAAATCTCACTATCT  949

seq1  CATTTTTTTTCATTTAGTTATCTACTTCTCCTGTATTAATGTGATGAATT  1000
      ||||||||||||||||| ||||||| ||| ||||||| ||||||||||||
seq2  CATTTTTTTTCATTTAG-TATCTAC-TCT-CTGTATT-ATGTGATGAATT  995

seq1  CTTTAAAAAAAACACTATTTTTTTTAAAGTTTTTTTTTTTTTGTTTACAC  1050
      ||||||||||||||||| |||||||||||  |||||       | |||||
seq2  CTTTAAAAAAAACACTA-TTTTTTTAAAGCGTTTTT-------TGTACAC  1037

seq1  CAAAAGTGAGGTTATTCTTAGGAAGATTAT-AGTGTTGA-TTGTTGTGTT  1098
        ||||||| ||||||||   ||||||||| |||||||| ||||||  ||
seq2  --AAAGTGA-GTTATTCT--AGAAGATTATAAGTGTTGATTTGTTGGTTT  1082

seq1  GCTACAGGTCATGTGACACTGAG-AGCTGGATCCTGGGCTTTTATGTTGA  1147
      ||||| ||||||||||| || || |||||||| |||    |||||| |||
seq2  GCTACCGGTCATGTGAC-CTTAGAAGCTGGAT-CTG---CTTTATG-TGA  1126

seq1  CCAGAAATAATTTTGTAAGC  1167
      |||||||| |||||||||||
seq2  CCAGAAAT-ATTTTGTAAGC  1145