BAC Information

Click to search

BAC

Clone NameB6Ng01-212C18
Chromosome3 (Build37)
Map Location 105,845,309 - 105,846,500
singlet/doubletsinglet
Overlap geneLOC670819
Upstream geneCttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594
Downstream geneLOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212C18.bB6Ng01-212C18.g
ACCGA030037GA030038
length1,1791,199
definitionB6Ng01-212C18.b B6Ng01-212C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggaaggataagcttatgagggagaacttcacaggagcttctg
atactgcaagtatctccactccagtatgaaggttgggttttcctttctag
atagtaatatatcgtctacacatttttctaagtatatatttccaaactag
gaaaaggttaaaaaaatggaatgaagcatataaaaacatttttgaaggaa
aatcattacacataattgtacatgtgtgtaaaaataaactgttttgcttt
gtatgatgtaagggggcttttgctaaagagtcacatacctgaggtcaggt
tacagacatgtactctgagctagtcatcttagttttccatgagatagtgc
tgatacaatcaccaaccctcaacactgaataatttgacataatgtttttc
taaacaatttctataggttttatacaacatgctatggtgtgcccacacat
attctgtatatacagcttaagtgttactgtgaaaacctttaagattctgt
tactcaaatgttataaataaccgatgttgctcatgagcctcttctgactc
cctctgcaaatgactcggtgctgtcaggcctgagtgtctccatcctcgct
atccgagtcagactcaacgtctaagtcctcatcactgtcttccttccgtt
tgcagcttcttctacagccagaaccttcattttcagtattttctggagct
tctggttctttattaaacagaataatgatctcctctttctttccatattt
ggcacaaacttcaagttcacaggcacatggtcttcacattatgtggtcag
agtcctttactgtcttttgtaaacatttaacacatttcttaggctttgac
agtggcttgtatttgctgtattttacactccattcaagaacttctttgca
gcattgacatactccatcatgacgttttgcattattttcttggtctgaac
actctatcaaacttgtcatgtttgaaggtgaacgtagtctggtgcttctg
aggccaggactgagtcacgtgctttctgggaactcatcaccaaaatctca
agcaccataagtggtcagcatttaaattgccagaaagaagtttgcaaata
atctgtgttcagtattaaaagatctcactccctaggaacatgtttggata
cctgctccatggtccttgaaatgaacttg
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccaactcacaccagtcagaatggctaagatcaaaaattcaggtgacagg
agttgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
cgattgcaagcttgtgcaaccactctggaaatcagtctaacggttcctta
gactgatttcagcaatacttctcctgggcatatgtccagaagatgtccca
accactaagaaggacacatgctccactatgttcatagcagccttatttat
aatagccagaaactggaaagaacccagatgcccctcaacagagatatgga
tacagaaaatgtggtacatttacacaatggagtactactcagctattaaa
aagaatgaatttatgaaattcctaggcaaatggatggacctgtagggcat
catcctgagtgaggtaacacaatcacaaagaaactcacacaatatgtact
cactgataagaggatattagcccaaaacttaggatacccaagatataaga
tacagtttgctaaacacatgaaactcaagaagaatgaagaccaaagtgtg
gacactgtgccccttcttagaattaggaacaaaacacccatggaaggaat
tacagagacaaagtttggagctgtgacgaaaggatggaccatctagagac
tgccatatccagggatccatcccataatcagcttccaaacgctgacacca
ttgcatacactagcaagattttgctgaaaggacccagatatagctgtctc
atgtgagactattccggggcctagaaaacacataagtggatgctcacagt
cagctattggatggatcacagggctcccaatggaggagctagagaaagta
cccaaggagctaaagggatctgcaaccctatagtggaacagcataatgaa
ctaccagtaccctggatctctggactctagctgcatattgtatcaaaaga
tgcctagtcagcatcactggtaaagagaggtccattgacccacaaacttt
atatgcccagttacagggacgtcaggtcaaaaagtgctatgctgtagcaa
ttccgggggaggctatgctacttgagtgaatgacggtatcgatcgtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105845309_105846500
seq2: B6Ng01-212C18.b_47_1225

seq1  GAATTCTGGGAAGGATAAGCTTATGAGGGAGAACTTCACAGGAGCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAGGATAAGCTTATGAGGGAGAACTTCACAGGAGCTTCTG  50

seq1  ATACTGCAAGTATCTCCACTCCAGTATGAAGGTTGGGTTTTCCTTTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCAAGTATCTCCACTCCAGTATGAAGGTTGGGTTTTCCTTTCTAG  100

seq1  ATAGTAATATATCGTCTACACATTTTTCTAAGTATATATTTCCAAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATATATCGTCTACACATTTTTCTAAGTATATATTTCCAAACTAG  150

seq1  GAAAAGGTTAAAAAAATGGAATGAAGCATATAAAAACATTTTTGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTAAAAAAATGGAATGAAGCATATAAAAACATTTTTGAAGGAA  200

seq1  AATCATTACACATAATTGTACATGTGTGTAAAAATAAACTGTTTTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTACACATAATTGTACATGTGTGTAAAAATAAACTGTTTTGCTTT  250

seq1  GTATGATGTAAGGGGGCTTTTGCTAAAGAGTCACATACCTGAGGTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGTAAGGGGGCTTTTGCTAAAGAGTCACATACCTGAGGTCAGGT  300

seq1  TACAGACATGTACTCTGAGCTAGTCATCTTAGTTTTCCATGAGATAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACATGTACTCTGAGCTAGTCATCTTAGTTTTCCATGAGATAGTGC  350

seq1  TGATACAATCACCAACCCTCAACACTGAATAATTTGACATAATGTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAATCACCAACCCTCAACACTGAATAATTTGACATAATGTTTTTC  400

seq1  TAAACAATTTCTATAGGTTTTATACAACATGCTATGGTGTGCCCACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTTCTATAGGTTTTATACAACATGCTATGGTGTGCCCACACAT  450

seq1  ATTCTGTATATACAGCTTAAGTGTTACTGTGAAAACCTTTAAGATTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATATACAGCTTAAGTGTTACTGTGAAAACCTTTAAGATTCTGT  500

seq1  TACTCAAATGTTATAAATAACCGATGTTGCTCATGAGCCTCTTCTGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAATGTTATAAATAACCGATGTTGCTCATGAGCCTCTTCTGACTC  550

seq1  CCTCTGCAAATGACTCGGTGCTGTCAGGCCTGAGTGTCTCCATCCTCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAATGACTCGGTGCTGTCAGGCCTGAGTGTCTCCATCCTCGCT  600

seq1  ATCCGAGTCAGACTCAACGTCTAAGTCCTCATCACTGTCTTCCTTCCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGTCAGACTCAACGTCTAAGTCCTCATCACTGTCTTCCTTCCGTT  650

seq1  TGCAGCTTCTTCTACAGCCAGAACCTTCATTTTCAGTATTTTCTGGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTCTTCTACAGCCAGAACCTTCATTTTCAGTATTTTCTGGAGCT  700

seq1  TCTGGTTCTTTATTAAACAGAATAATGATCTCCTCTTTCTTTCCATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTTTATTAAACAGAATAATGATCTCCTCTTTCTTTCCATATTT  750

seq1  GGCACAAACTTCAAGTTCACAGGCACATGGTCTTCACATTATGTGGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAACTTCAAGTTCACAGGCACATGGTCTTCACATTATGTGGTCAG  800

seq1  AGTCCTTTACTGTCTTTTGTAAACATTTAACACATTTCTTAGGCTTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTACTGTCTTTTGTAAACATTTAACACATTTCTTAGGCTTTGAC  850

seq1  AGTGGCTTGTATTTGCTGTATTTTACACTCCATTCAAGAACTTCTTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGTATTTGCTGTATTTTACACTCCATTCAAGAACTTCTTTGCA  900

seq1  GCATTGACATACTCCATCATGACGTTTTGCATTAATTTTCTTGGTCTGAA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATTGACATACTCCATCATGACGTTTTGCATT-ATTTTCTTGGTCTGAA  949

seq1  CACTCTTATCAAACTTGTCATGTTTGAAGGTGAACGTAGTCTGGTGCTTC  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTC-TATCAAACTTGTCATGTTTGAAGGTGAACGTAGTCTGGTGCTTC  998

seq1  TGAGGCCAGGACTGAGTCACGTTGCCTTTCTGGGAACTCACCACCAAAAT  1050
      ||||||||||||||||||||||   ||||||||||||||| |||||||||
seq2  TGAGGCCAGGACTGAGTCACGT--GCTTTCTGGGAACTCATCACCAAAAT  1046

seq1  CTCAAGCACCATAAGTTGGTTCAGCATTTAAATTGCAGGAAAG-AGTTTG  1099
      ||||||||||||||||  | ||||||||||||||||  ||||| ||||||
seq2  CTCAAGCACCATAAGT--GGTCAGCATTTAAATTGCCAGAAAGAAGTTTG  1094

seq1  CAAATAATTCTTGTGTTCAGTAATAAAAGATCTTCACTCTCTAGGAAACA  1149
      ||||||||   ||||||||||| ||||||||| |||||| ||||| ||||
seq2  CAAATAAT--CTGTGTTCAGTATTAAAAGATC-TCACTCCCTAGG-AACA  1140

seq1  TGTTTTGAATACTCTGCTCACATTTGTTCCTTGAAATG-ACTTG  1192
      || |||| |||| |||||| ||  || ||||||||||| |||||
seq2  TG-TTTGGATAC-CTGCTC-CA--TGGTCCTTGAAATGAACTTG  1179