BAC Information

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BAC

Clone NameB6Ng01-212G23
Chromosome3 (Build37)
Map Location 52,835,367 - 53,010,704
singlet/doubletdoublet
Overlap geneLhfp, LOC100039808
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6
Downstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212G23.bB6Ng01-212G23.g
ACCGA030232GA030233
length1,120319
definitionB6Ng01-212G23.b B6Ng01-212G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,009,594 - 53,010,704)(52,835,367 - 52,835,685)
sequence
gaattctccaggaccccacccccaccagacatgttagtcaggcttacaat
agatatttcccacatcttaggaagggtctgttccttgcagcagaatctaa
ccaggagacttctctctaaaaccaccggaaggaaccccccactggcatga
tcaatcagtctcctgtagcttcaacaggcattccacagcaaagtctatgg
aaaatgttaacatttcatcacttcctattctgagcgctgttaaaaatcag
gaaatcactgcgactcatcgatctttacagggaaaggaacacaatggcat
agatctacagcctcctgacggctccggtcaatggctgcttttcagccaac
attctatactatgggaaattacatattaagccatcatagcgagaaccatc
ccaggtcgagtctctgttaagagacttaatgaagggttgaatttactgcc
tatgatatggcagaaggatagatatgtgtgagtagtctgattataacctg
ggttgaataattttactttaaactaaaacacaactttaactgcagctagg
aagaattccatcagaaagccacatcctaaatggctactgcagatttactg
tagctattttaacctccaggttaccttgtaaaatttttataattgtaaaa
gtggaatatgaagtatgaggtcctgcgatatgatttcataaagctcgata
tatgtgcattgactagaatctgaagatattctttgttcttccacaacaca
tgcaaggaatctagaggcatcctactgagctatggagggtgtgcccttgg
aaacaatttctgaaatggcattcaggcatgaatcatgggacttcagtccc
cagatggcatctctagggttcagtgacatcccatgcccactgtacaactc
agagtgagtgcagaacagcctgcttagatgtctgtccactggtctcatac
tgtgaccgcaagggctgggacttagtacatggtctgagtgcatgtctatg
ttccaatagcttctcgctttacctcaaaaaaaaaaaattagcagaccaca
aaattcaacctgaaacttatgcttcccagcctgttctttagtaacttgaa
aggtcagcccaatttatacc
agctgaaactgtccagcagggaaaaacaaacaaacaaacaaacaaaagac
aaacagatgatctgaaataaggacttgaaaaaactttgagaaaaagacaa
tttccctagttctgagtggttagtactattaccacaatgtcattattatt
atggccttaaaaataaccatgatgttatttctgtgtcagcaatggaggaa
taaggcaaggaggaaaagtttgtctgtgacaaaagggcctgtcaccttgt
cttaaagcagattcccccaagctgaaacattccctggggcgaggtagagt
gaggtgggggtggggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53009594_53010704
seq2: B6Ng01-212G23.b_48_1167 (reverse)

seq1  GGTAT-TATTGGGCTGACCTT--CAGTTACTAAAGAACA-GCTGGGAAGC  46
      |||||  ||||||||||||||   ||||||||||||||| ||||||||||
seq2  GGTATAAATTGGGCTGACCTTTCAAGTTACTAAAGAACAGGCTGGGAAGC  50

seq1  AT-AGTTTCAGGTTGAATTTTGT-GTCTGCT-ATTTTTTTTTTTTGA-GT  92
      || |||||||||||||||||||| ||||||| ||||||||||||||| ||
seq2  ATAAGTTTCAGGTTGAATTTTGTGGTCTGCTAATTTTTTTTTTTTGAGGT  100

seq1  AAAGCGAG-AGCTATTGGAACATAGACATGCACTCAGACCATGTACTAAG  141
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAGAAGCTATTGGAACATAGACATGCACTCAGACCATGTACTAAG  150

seq1  TCCCAGCCCTTGCGGTCACAGTATGAGACCAGTGGACAGACATCTAAGCA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCCTTGCGGTCACAGTATGAGACCAGTGGACAGACATCTAAGCA  200

seq1  GGCTGTTCTGCACTCACTCTGAGTTGTACAGTGGGCATGGGATGTCACTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCTGCACTCACTCTGAGTTGTACAGTGGGCATGGGATGTCACTG  250

seq1  AACCCTAGAGATGCCATCTGGGGACTGAAGTCCCATGATTCATGCCTGAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGAGATGCCATCTGGGGACTGAAGTCCCATGATTCATGCCTGAA  300

seq1  TGCCATTTCAGAAATTGTTTCCAAGGGCACACCCTCCATAGCTCAGTAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCAGAAATTGTTTCCAAGGGCACACCCTCCATAGCTCAGTAGG  350

seq1  ATGCCTCTAGATTCCTTGCATGTGTTGTGGAAGAACAAAGAATATCTTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTAGATTCCTTGCATGTGTTGTGGAAGAACAAAGAATATCTTCA  400

seq1  GATTCTAGTCAATGCACATATATCGAGCTTTATGAAATCATATCGCAGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGTCAATGCACATATATCGAGCTTTATGAAATCATATCGCAGGA  450

seq1  CCTCATACTTCATATTCCACTTTTACAATTATAAAAATTTTACAAGGTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACTTCATATTCCACTTTTACAATTATAAAAATTTTACAAGGTAA  500

seq1  CCTGGAGGTTAAAATAGCTACAGTAAATCTGCAGTAGCCATTTAGGATGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGTTAAAATAGCTACAGTAAATCTGCAGTAGCCATTTAGGATGT  550

seq1  GGCTTTCTGATGGAATTCTTCCTAGCTGCAGTTAAAGTTGTGTTTTAGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGATGGAATTCTTCCTAGCTGCAGTTAAAGTTGTGTTTTAGTT  600

seq1  TAAAGTAAAATTATTCAACCCAGGTTATAATCAGACTACTCACACATATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAATTATTCAACCCAGGTTATAATCAGACTACTCACACATATC  650

seq1  TATCCTTCTGCCATATCATAGGCAGTAAATTCAACCCTTCATTAAGTCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCTGCCATATCATAGGCAGTAAATTCAACCCTTCATTAAGTCTC  700

seq1  TTAACAGAGACTCGACCTGGGATGGTTCTCGCTATGATGGCTTAATATGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGACTCGACCTGGGATGGTTCTCGCTATGATGGCTTAATATGT  750

seq1  AATTTCCCATAGTATAGAATGTTGGCTGAAAAGCAGCCATTGACCGGAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCATAGTATAGAATGTTGGCTGAAAAGCAGCCATTGACCGGAGC  800

seq1  CGTCAGGAGGCTGTAGATCTATGCCATTGTGTTCCTTTCCCTGTAAAGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGAGGCTGTAGATCTATGCCATTGTGTTCCTTTCCCTGTAAAGAT  850

seq1  CGATGAGTCGCAGTGATTTCCTGATTTTTAACAGCGCTCAGAATAGGAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGTCGCAGTGATTTCCTGATTTTTAACAGCGCTCAGAATAGGAAG  900

seq1  TGATGAAATGTTAACATTTTCCATAGACTTTGCTGTGGAATGCCTGTTGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATGTTAACATTTTCCATAGACTTTGCTGTGGAATGCCTGTTGA  950

seq1  AGCTACAGGAGACTGATTGATCATGCCAGTGGGGGGTTCCTTCCGGTGGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGGAGACTGATTGATCATGCCAGTGGGGGGTTCCTTCCGGTGGT  1000

seq1  TTTAGAGAGAAGTCTCCTGGTTAGATTCTGCTGCAAGGAACAGACCCTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGAAGTCTCCTGGTTAGATTCTGCTGCAAGGAACAGACCCTTC  1050

seq1  CTAAGATGTGGGAAATATCTATTGTAAGCCTGACTAACATGTCTGGTGGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGTGGGAAATATCTATTGTAAGCCTGACTAACATGTCTGGTGGG  1100

seq1  GGTGGGGTCCTGGAGAATTC  1111
      ||||||||||||||||||||
seq2  GGTGGGGTCCTGGAGAATTC  1120

seq1: chr3_52835367_52835685
seq2: B6Ng01-212G23.g_76_394

seq1  AGCTGAAACTGTCCAGCAGGGAAAAACAAACAAACAAACAAACAAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACTGTCCAGCAGGGAAAAACAAACAAACAAACAAACAAAAGAC  50

seq1  AAACAGATGATCTGAAATAAGGACTTGAAAAAACTTTGAGAAAAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGATCTGAAATAAGGACTTGAAAAAACTTTGAGAAAAAGACAA  100

seq1  TTTCCCTAGTTCTGAGTGGTTAGTACTATTACCACAATGTCATTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGTTCTGAGTGGTTAGTACTATTACCACAATGTCATTATTATT  150

seq1  ATGGCCTTAAAAATAACCATGATGTTATTTCTGTGTCAGCAATGGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTAAAAATAACCATGATGTTATTTCTGTGTCAGCAATGGAGGAA  200

seq1  TAAGGCAAGGAGGAAAAGTTTGTCTGTGACAAAAGGGCCTGTCACCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAGGAGGAAAAGTTTGTCTGTGACAAAAGGGCCTGTCACCTTGT  250

seq1  CTTAAAGCAGATTCCCCCAAGCTGAAACATTCCCTGGGGCGAGGTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCAGATTCCCCCAAGCTGAAACATTCCCTGGGGCGAGGTAGAGT  300

seq1  GAGGTGGGGGTGGGGAAGA  319
      |||||||||||||||||||
seq2  GAGGTGGGGGTGGGGAAGA  319