BAC Information

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BAC

Clone NameB6Ng01-212H05
Chromosome3 (Build37)
Map Location 118,552,742 - 118,553,954
singlet/doubletsinglet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212H05.bB6Ng01-212H05.g
ACCGA030242GA030243
length1,2011,000
definitionB6Ng01-212H05.b B6Ng01-212H05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttccgtgataagtttcaatgataatggttaaaactggaatt
tgtgtttcattcctattcattcatccatatatttcctgtaagataattgg
tagaagtcctgcttaaaggatggttgccaggtaccaagaattataaataa
attaattctaaattgcaaaagctgtgataggtattgaagccatatctttg
tcataaagaacatgaatttagaaaggtcctttgagaagctcaaaactgca
taatagtaggcatgttagacttaacccaggcttccgaggactaatgaatg
cagacatagagacacggagatcaggtgtccactataattgggataacaga
ttgtgagaaggcaccagagaggtcaatcatacaacttccctgggtggtgc
aagtactctaatgttaatacttttatattgatactattactacatggtaa
gattatatatgtgatcatgtgttgatatattcaccttgatgattgacata
gttatcactaaatgttaagcaatatgagactatggaagtaaggtgtgagt
ggtgccagatggaccaggcttgctgttttgtttttgatatacatattggc
ataacggtttcctagaaaaaggaaattttaatttagcttgagcatggtgc
tatggagtggtaataaagcaccaatcccttgatatcatttgacaataatt
ttgtaatgtccatgtccagtgttggcattgaggctacttcatatgtatca
tacatatccagtgccctgagaaaatccaggataaaggtttacaattcata
ttcatgtatttcctagctaaaaaattcttttaaggcaatttgtaagtaaa
tacatccctctgccagctatactgtgtacacattttcccatggaggaaaa
acttcagaaataaggagtactctctttatccatcccaacagctgcactct
cacaacccctagctcttggcaggaagtcatgtcagatttaaatgggtcac
tgaagaaagacttatttcttcacatgggaactggaaacgagtttggcctt
tggagacaggagtcatgagaagatggggagggctataatcccaccctaac
atggttaatcatgggatagcagaaaccttctgaggatctggactgacatc
ctgctccaagctcagtagcaggctgaggcagactctctcagcttttccct
c

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatagatgctggtgaggatgtggagaaagaggaacatgcctccattgtt
agtgggattgcaagcttgtacaaccactctggaaatcagtctggcggttc
ctcagaaaaatggacatagtactaccagaggatccagcaatacctctcct
gggcatatatccagaagatgtcccaaccggtaagaaggacacatgctcca
ctatgttcatagcagccttatttttaatagccagaagctggaaagaaccc
agatgcccctcaacagaggaatggataccaaaaaatgtggtacatttaca
cagtggagtactactcagctagtaaaaaggatgaatttatgaaattccta
ggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatc
acaaaagaactcaaatgatatgtactcactgataagtggatattagccca
gaaacttagtatagtgagatataagatacaatttgcaaaacacatgaaac
tgaagaagaacaaagaccaaagtgtggacactttgccccttcttagaatt
ggaaacaatcacccatggaaggagttacagagacaaagtttggagctgag
acaaaaggatggaccatctagagactgccatatccaatgatccatcccat
aattagcctccaaacgatatatgtcttttttaatggtactttttcttaat
tttttaaacaaaacatcacttctatgtgtatagtattaaatatgattcca
tttgtttcaatgttatcactaagaatctctaagcattttgttgagttcca
gtttaatattgaaattttattagcctgtgtatttaatatcaaaaacctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118552742_118553954
seq2: B6Ng01-212H05.b_44_1244

seq1  GAATTCATCTTCCGTGATAAGTTTCAATGATAATGGTTAAAACTGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCCGTGATAAGTTTCAATGATAATGGTTAAAACTGGAATT  50

seq1  TGTGTTTCATTCCTATTCATTCATCCATATATTTCCTGTAAGATAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCATTCCTATTCATTCATCCATATATTTCCTGTAAGATAATTGG  100

seq1  TAGAAGTCCTGCTTAAAGGATGGTTGCCAGGTACCAAGAATTATAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCCTGCTTAAAGGATGGTTGCCAGGTACCAAGAATTATAAATAA  150

seq1  ATTAATTCTAAATTGCAAAAGCTGTGATAGGTATTGAAGCCATATCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTAAATTGCAAAAGCTGTGATAGGTATTGAAGCCATATCTTTG  200

seq1  TCATAAAGAACATGAATTTAGAAAGGTCCTTTGAGAAGCTCAAAACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAACATGAATTTAGAAAGGTCCTTTGAGAAGCTCAAAACTGCA  250

seq1  TAATAGTAGGCATGTTAGACTTAACCCAGGCTTCCGAGGACTAATGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAGGCATGTTAGACTTAACCCAGGCTTCCGAGGACTAATGAATG  300

seq1  CAGACATAGAGACACGGAGATCAGGTGTCCACTATAATTGGGATAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAGAGACACGGAGATCAGGTGTCCACTATAATTGGGATAACAGA  350

seq1  TTGTGAGAAGGCACCAGAGAGGTCAATCATACAACTTCCCTGGGTGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAAGGCACCAGAGAGGTCAATCATACAACTTCCCTGGGTGGTGC  400

seq1  AAGTACTCTAATGTTAATACTTTTATATTGATACTATTACTACATGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTAATGTTAATACTTTTATATTGATACTATTACTACATGGTAA  450

seq1  GATTATATATGTGATCATGTGTTGATATATTCACCTTGATGATTGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATATGTGATCATGTGTTGATATATTCACCTTGATGATTGACATA  500

seq1  GTTATCACTAAATGTTAAGCAATATGAGACTATGGAAGTAAGGTGTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACTAAATGTTAAGCAATATGAGACTATGGAAGTAAGGTGTGAGT  550

seq1  GGTGCCAGATGGACCAGGCTTGCTGTTTTGTTTTTGATATACATATTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGATGGACCAGGCTTGCTGTTTTGTTTTTGATATACATATTGGC  600

seq1  ATAACGGTTTCCTAGAAAAAGGAAATTTTAATTTAGCTTGAGCATGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGGTTTCCTAGAAAAAGGAAATTTTAATTTAGCTTGAGCATGGTGC  650

seq1  TATGGAGTGGTAATAAAGCACCAATCCCTTGATATCATTTGACAATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTGGTAATAAAGCACCAATCCCTTGATATCATTTGACAATAATT  700

seq1  TTGTAATGTCCATGTCCAGTGTTGGCATTGAGGCTACTTCATATGTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGTCCATGTCCAGTGTTGGCATTGAGGCTACTTCATATGTATCA  750

seq1  TACATATCCAGTGCCCTGAGAAAATCCAGGATAAAGGTTTACAATTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCCAGTGCCCTGAGAAAATCCAGGATAAAGGTTTACAATTCATA  800

seq1  TTCATGTATTTCCTAGCTAAAAAATTCTTTTAAGGCAATTTGTAAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATTTCCTAGCTAAAAAATTCTTTTAAGGCAATTTGTAAGTAAA  850

seq1  TACATCCCTCTGCCAGCTATACTGTGTACACATTTTCCCATGGAGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCTCTGCCAGCTATACTGTGTACACATTTTCCCATGGAGGAAAA  900

seq1  ACTTCAGAAATAAGGAGTACTCTCTTTATCCATCCCAACAGCTGCACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAAATAAGGAGTACTCTCTTTATCCATCCCAACAGCTGCACTCT  950

seq1  CACAACCCCTAGCTCTTGGCAGGAAGTCATGTCAGATTTAAATGGGTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCCTAGCTCTTGGCAGGAAGTCATGTCAGATTTAAATGGGTCAC  1000

seq1  TGAAGGAAAGACTTA-TTCTTCACATGGGAACTGGAAACGAGTTTTGGCC  1049
      |||| |||||||||| |||||||||||||||||||||||||| |||||||
seq2  TGAA-GAAAGACTTATTTCTTCACATGGGAACTGGAAACGAG-TTTGGCC  1048

seq1  TTTGGAGACAGGGAGTCCATGGAGAGATGGGGAGGGCTATTAAATCCCCA  1099
      |||||||||| ||||| ||||   ||||||||||||||||  ||| ||||
seq2  TTTGGAGACA-GGAGT-CATGAGAAGATGGGGAGGGCTAT--AAT-CCCA  1093

seq1  CCCT-ACATGGTAAATCAATGGAATAAGCAGAAA-CTTCTGAGGATCT-G  1146
      |||| ||||||| |||| |||| || |||||||| ||||||||||||| |
seq2  CCCTAACATGGTTAATC-ATGGGAT-AGCAGAAACCTTCTGAGGATCTGG  1141

seq1  ACTGACATCTGCCTCCAGCCTCCCAAGTAGCCAGGCCTGAGGCAGAACTC  1196
      |||||||||   |||||  |||   ||||| |||| ||||||||| ||||
seq2  ACTGACATCCTGCTCCAAGCTC---AGTAG-CAGG-CTGAGGCAG-ACTC  1185

seq1  TCTCAGCTTTTCTCCTC  1213
      |||||||||||| ||||
seq2  TCTCAGCTTTTC-CCTC  1201


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