BAC Information

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BAC

Clone NameB6Ng01-213C07
Chromosome3 (Build37)
Map Location 16,082,273 - 16,194,006
singlet/doubletdoublet
Overlap geneYthdf3, LOC100040034
Upstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213C07.bB6Ng01-213C07.g
ACCGA030758GA030759
length1,0681,165
definitionB6Ng01-213C07.b B6Ng01-213C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,082,273 - 16,083,341)(16,192,836 - 16,194,006)
sequence
gaattccaaagccatgcttctcagataggagtaaagtcaaggcctgcaag
ccttttctattagttttcgctatgcactttcaactttccagcctcaattc
ctcttccgacaaactccttgaaaaccaaaaatgtttttgggagtgggagc
taggtagagcaatgtagaataagggggaccttgggaaatggactgatttg
cagctcagggtccgaacagaaggaacacaagagaaagggatttgggttga
ccacacctaaaattgccttttgaggatttgcatgagaagcaatcttgaca
cagtgattctaaaatattgtggtactacatatagaaaactgtgattttcc
taatttcctgcttcataggttagcacttaaactgggaggttttaaaagga
tttggctagttaggaatgcacactacaccacacctgtaaagaaatcttac
ttgggaaggaaattcaataaaaatgccaaaattataattggactgacttt
ctttgtttttgccaacaggtaagaaagtaacattaccagtttctagggac
attttaacattttctttttttcgggaggggcagcagtcttgcaactgttt
ctctttccgaaggctattttattcaataaaaaccaaccccatcccagtag
agagttagaaagcattcattgagagcgtgctcccgcaccccgcacgcacg
cacgcacgcccggtggtggctgagcggacaggcgctgctggaccgcttct
gtagcctccaggctaacaacgcccgagcccaacgctcacggtaccgcgca
tgcgtctaaagtacagctgcgcctccgggtctctgcccccctcccctctc
cgatgacgtgcacggcgggggcggagcccgaggccgtggcgggagtgggg
gaggaactgcgaggtgtgcgtggacgtcagactggatagcggaagtcaag
actgtccggagcggaagtggggctgaggcgcctgtccgccattgtgggcc
cgaggatcgaagaacagtcggggacgagcatgttgctaggcggcaatctc
gggcccttccgcaactcc

gaattcactacaagttcatggttggctatcttggaatatgctgtgcagca
aaaacaagcaacacccttccacaaagtgaaagacaaaaactgactcaata
aagttatcctctgataatcatccccatgcccatatatgcgtgcatgtaca
tgtctgttcatgtgctgataggcatttcttaaaggagagagatcaatgaa
gaaaaatattaaaattaggttaaagcaatattacaaatatgactgtatcc
acatttgttctggaaggaatctgagagattctgtagatgtgtctttggtt
aacttggtaatattcaaaaaaggattcttggggattaaggtgtagctggg
aaatctctgaaatggcccaccatttttgcttcatgaaactcaaactggac
agcagccttttgaaaacagcagaccacctgaaaaggaaaaacctccaata
gaggcagctctacacaggtgaaagctccaagggtggtcttctggaaagag
tgtggaaagggctgtgtcatcacatgcttatgcatgtgatgcaggtgaga
aaccctcctgccatgaatgagccctcactgtgcatcagagaatacacaca
aagcaaacactgtcagtgtaaacagtgtagaattctcttctgccagaaga
catcagagaacaggaggagactgagtagcagactatttggtctccaagac
cactcttcccttattttgctcacagtttcctgttgctttaagcaatgcca
tgtagattaattcagccaatggaataggaaggaaaaagaagatgaccact
tccaaacctggcaacaaagcctcttccccacaactctctaacttcttagt
ctctataagactaaaggacaaatgacagacctaggattcattggtggaac
atagatcatgacttattttgtggtttgaatatcatgacaatagcctacag
aacttttggaaacagtgctcctgtactgctcccccctccttcatcacaac
acaccttcattgctacatccactcagtagtgacaagcgcgacaggtccca
aaacctggcactgtcccgaggcaaaagttcatggaaacttagtctcctgg
aacgtgcattcttgtataaagaaatgcttcagtgactggcttagttggta
atggatctgtgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16082273_16083341
seq2: B6Ng01-213C07.b_48_1115

seq1  GAATTCCAAAGCCATGCTTCTCAGATAGGAGTAAAGTCAAGGCCTGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCCATGCTTCTCAGATAGGAGTAAAGTCAAGGCCTGCAAG  50

seq1  CCTTTTCTATTAGTTTTCGCTATGCACTTTCAACTTTCCAGCCTCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTATTAGTTTTCGCTATGCACTTTCAACTTTCCAGCCTCAATTC  100

seq1  CTCTTCCGACAAACTCCTTGAAAACCAAAAATGTTTTTGGGAGTGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCGACAAACTCCTTGAAAACCAAAAATGTTTTTGGGAGTGGGAGC  150

seq1  TAGGTAGAGCAATGTAGAATAAGGGGGACCTTGGGAAATGGACTGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGAGCAATGTAGAATAAGGGGGACCTTGGGAAATGGACTGATTTG  200

seq1  CAGCTCAGGGTCCGAACAGAAGGAACACAAGAGAAAGGGATTTGGGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGGTCCGAACAGAAGGAACACAAGAGAAAGGGATTTGGGTTGA  250

seq1  CCACACCTAAAATTGCCTTTTGAGGATTTGCATGAGAAGCAATCTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTAAAATTGCCTTTTGAGGATTTGCATGAGAAGCAATCTTGACA  300

seq1  CAGTGATTCTAAAATATTGTGGTACTACATATAGAAAACTGTGATTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTCTAAAATATTGTGGTACTACATATAGAAAACTGTGATTTTCC  350

seq1  TAATTTCCTGCTTCATAGGTTAGCACTTAAACTGGGAGGTTTTAAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCTGCTTCATAGGTTAGCACTTAAACTGGGAGGTTTTAAAAGGA  400

seq1  TTTGGCTAGTTAGGAATGCACACTACACCACACCTGTAAAGAAATCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTAGTTAGGAATGCACACTACACCACACCTGTAAAGAAATCTTAC  450

seq1  TTGGGAAGGAAATTCAATAAAAATGCCAAAATTATAATTGGACTGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGAAATTCAATAAAAATGCCAAAATTATAATTGGACTGACTTT  500

seq1  CTTTGTTTTTGCCAACAGGTAAGAAAGTAACATTACCAGTTTCTAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTGCCAACAGGTAAGAAAGTAACATTACCAGTTTCTAGGGAC  550

seq1  ATTTTAACATTTTCTTTTTTTCGGGAGGGGCAGCAGTCTTGCAACTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACATTTTCTTTTTTTCGGGAGGGGCAGCAGTCTTGCAACTGTTT  600

seq1  CTCTTTCCGAAGGCTATTTTATTCAATAAAAACCAACCCCATCCCAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCGAAGGCTATTTTATTCAATAAAAACCAACCCCATCCCAGTAG  650

seq1  AGAGTTAGAAAGCATTCATTGAGAGCGTGCTCCCGCACCCCGCACGCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGAAAGCATTCATTGAGAGCGTGCTCCCGCACCCCGCACGCACG  700

seq1  CACGCACGCCCGGTGGTGGCTGAGCGGACAGGCGCTGCTGGACCGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACGCCCGGTGGTGGCTGAGCGGACAGGCGCTGCTGGACCGCTTCT  750

seq1  GTAGCCTCCAGGCTAACAACGCCCGAGCCCAACGCTCACGGTACCGCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTCCAGGCTAACAACGCCCGAGCCCAACGCTCACGGTACCGCGCA  800

seq1  TGCGTCTAAAGTACAGCTGCGCCTCCGGGTCTCTGCCCCCCTCCCCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTAAAGTACAGCTGCGCCTCCGGGTCTCTGCCCCCCTCCCCTCTC  850

seq1  CGATGACGTGCACGGCGGGGGCGGAGCCCGAGGCCGTGGCGGGAGTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGACGTGCACGGCGGGGGCGGAGCCCGAGGCCGTGGCGGGAGTGGGG  900

seq1  GAGGAACTGCGAGGTGTGCGTGGACGTCAGACTGGATAGCGGAAGGTCAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  GAGGAACTGCGAGGTGTGCGTGGACGTCAGACTGGATAGCGGAA-GTCAA  949

seq1  GACGGCCCGGAGCGGAAGTGGGGCTGAGGCGCCTGTCCGCCATTGTGGGC  1000
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCGGAGCGGAAGTGGGGCTGAGGCGCCTGTCCGCCATTGTGGGC  999

seq1  CCGAGGATCGGAGGACGAGCGGGGACGAGCAGTGTGC-AGGCGGCGAGCT  1049
      |||||||||| || ||   ||||||||||||   ||| ||||||| | ||
seq2  CCGAGGATCGAAGAACAGTCGGGGACGAGCATGTTGCTAGGCGGCAATCT  1049

seq1  CGGGCCCCTTCCGCGACTCC  1069
      |||| ||||||||| |||||
seq2  CGGG-CCCTTCCGCAACTCC  1068


seq1: chr3_16192836_16194006
seq2: B6Ng01-213C07.g_64_1228 (reverse)

seq1  AGCACACAGATCCATTTACCAACTAAAGCAAGGTCACTGGAGCA-TTCTT  49
      |||||||||||||| |||||||||||  ||  ||||||| |||| |||||
seq2  AGCACACAGATCCA-TTACCAACTAAGCCA--GTCACTGAAGCATTTCTT  47

seq1  TATACAGGATGCCACGGTTCCAGGAGACTAAGTTTCCATGAACTTTTTGC  99
      |||||| ||   ||| ||||||||||||||||||||||||||| ||||||
seq2  TATACAAGAATGCAC-GTTCCAGGAGACTAAGTTTCCATGAAC-TTTTGC  95

seq1  CTCGGGACAGTGCCCAGGTTTTTGGGACCTGTCGCGCTTGTCACTACTGG  149
      |||||||||||| ||||| ||||||||||||||||||||||||||||| |
seq2  CTCGGGACAGTG-CCAGG-TTTTGGGACCTGTCGCGCTTGTCACTACT-G  142

seq1  AGTGGATGTAGCAATGAAGGTGTGTTGTGATGAAGGA-GGGGGAGCAGTA  198
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGGATGTAGCAATGAAGGTGTGTTGTGATGAAGGAGGGGGGAGCAGTA  192

seq1  CAGGAGCACTGTTTCCAAAAGTTCTGTAGGCTATTGTCATGATATTCAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCACTGTTTCCAAAAGTTCTGTAGGCTATTGTCATGATATTCAAA  242

seq1  CCACAAAATAAGTCATGATCTATGTTCCACCAATGAATCCTAGGTCTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATAAGTCATGATCTATGTTCCACCAATGAATCCTAGGTCTGTC  292

seq1  ATTTGTCCTTTAGTCTTATAGAGACTAAGAAGTTAGAGAGTTGTGGGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTTTAGTCTTATAGAGACTAAGAAGTTAGAGAGTTGTGGGGAA  342

seq1  GAGGCTTTGTTGCCAGGTTTGGAAGTGGTCATCTTCTTTTTCCTTCCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTGTTGCCAGGTTTGGAAGTGGTCATCTTCTTTTTCCTTCCTAT  392

seq1  TCCATTGGCTGAATTAATCTACATGGCATTGCTTAAAGCAACAGGAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGCTGAATTAATCTACATGGCATTGCTTAAAGCAACAGGAAACT  442

seq1  GTGAGCAAAATAAGGGAAGAGTGGTCTTGGAGACCAAATAGTCTGCTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAAATAAGGGAAGAGTGGTCTTGGAGACCAAATAGTCTGCTACT  492

seq1  CAGTCTCCTCCTGTTCTCTGATGTCTTCTGGCAGAAGAGAATTCTACACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTCCTGTTCTCTGATGTCTTCTGGCAGAAGAGAATTCTACACT  542

seq1  GTTTACACTGACAGTGTTTGCTTTGTGTGTATTCTCTGATGCACAGTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACACTGACAGTGTTTGCTTTGTGTGTATTCTCTGATGCACAGTGAG  592

seq1  GGCTCATTCATGGCAGGAGGGTTTCTCACCTGCATCACATGCATAAGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTCATGGCAGGAGGGTTTCTCACCTGCATCACATGCATAAGCAT  642

seq1  GTGATGACACAGCCCTTTCCACACTCTTTCCAGAAGACCACCCTTGGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACACAGCCCTTTCCACACTCTTTCCAGAAGACCACCCTTGGAGC  692

seq1  TTTCACCTGTGTAGAGCTGCCTCTATTGGAGGTTTTTCCTTTTCAGGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTGTGTAGAGCTGCCTCTATTGGAGGTTTTTCCTTTTCAGGTGG  742

seq1  TCTGCTGTTTTCAAAAGGCTGCTGTCCAGTTTGAGTTTCATGAAGCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTTTCAAAAGGCTGCTGTCCAGTTTGAGTTTCATGAAGCAAAA  792

seq1  ATGGTGGGCCATTTCAGAGATTTCCCAGCTACACCTTAATCCCCAAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGCCATTTCAGAGATTTCCCAGCTACACCTTAATCCCCAAGAAT  842

seq1  CCTTTTTTGAATATTACCAAGTTAACCAAAGACACATCTACAGAATCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTGAATATTACCAAGTTAACCAAAGACACATCTACAGAATCTCT  892

seq1  CAGATTCCTTCCAGAACAAATGTGGATACAGTCATATTTGTAATATTGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCTTCCAGAACAAATGTGGATACAGTCATATTTGTAATATTGCT  942

seq1  TTAACCTAATTTTAATATTTTTCTTCATTGATCTCTCTCCTTTAAGAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAATTTTAATATTTTTCTTCATTGATCTCTCTCCTTTAAGAAAT  992

seq1  GCCTATCAGCACATGAACAGACATGTACATGCACGCATATATGGGCATGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCAGCACATGAACAGACATGTACATGCACGCATATATGGGCATGG  1042

seq1  GGATGATTATCAGAGGATAACTTTATTGAGTCAGTTTTTGTCTTTCACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTATCAGAGGATAACTTTATTGAGTCAGTTTTTGTCTTTCACTT  1092

seq1  TGTGGAAGGGTGTTGCTTGTTTTTGCTGCACAGCATATTCCAAGATAGCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGGTGTTGCTTGTTTTTGCTGCACAGCATATTCCAAGATAGCC  1142

seq1  AACCATGAACTTGTAGTGAATTC  1171
      |||||||||||||||||||||||
seq2  AACCATGAACTTGTAGTGAATTC  1165


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