BAC Information

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BAC

Clone NameB6Ng01-213C09
Chromosome3 (Build37)
Map Location 25,938,281 - 26,095,192
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213C09.bB6Ng01-213C09.g
ACCGA030762GA030763
length1,1551,151
definitionB6Ng01-213C09.b B6Ng01-213C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,938,281 - 25,939,449)(26,094,054 - 26,095,192)
sequence
gaattccatttagctacaggaagcattctttgtggttccctgctgctcat
ttatagtgcagaccagttatactcagaacaagtgtgcgcatagagcagat
ctatgtgaggcaacatcatggaggttgttgtgctaaaagccacaattgtt
gatttcatagatgacttcaacaagagccagatggaatatacaaaaacaaa
acacacaaactgcttacaaagactgtttctcacatggttatcaacaaggg
actctagaccatattttttaaaacatctttaaggagctggttagcaatta
aaggagaattaaaagaggcacacgttttgtagcaaacaataaaagctaag
ggtgtgggagagactgaaagagggaaaaagcacaggcattgattagatgt
atcagaaaagcttcagtgatggggagacataaattcaagcttcaagaaat
gggctaaagagcgattgggagaaaaggcaaagaagcttccagatgggaga
acagcatgagcagaagaaaagagtaggagtctagtccccaaatgttattt
caagttccccttcttacaagccaacaatggctcccaattatccctgcata
taattaagattcctaatcacaggcttcaaaccttccactcctccatccct
agacacccatctaatacttgaatcaggcgtttcagcctgatacacactcc
acagacttttcatcagcattacacaatgtccacagcttccatagcttctc
ctaagaaatgttccccaaggcaccacaccatgttcagcctttatttcaga
agatggcttaaactgatcatttctttcataggcttcctccactaacctat
ctctgctctgagccccatagacaaacttcaattagtcacatttttgtttc
ctgtggtcttagaactcaaatctacactttaaattgtactcaatactgct
ctcaagaaaggcacaaactatacccttcattactagattagatgaggagg
cccttgaccttgagcacatcaagatgcttgctctcttatacacttcatgt
atgtattcaccaattgtttgtgtaacactgatcaatattttactttttag
cctacagaatctttgcacttcgagatagcaacagtgaatcagatgtgtgt
gaata

gaattcactggctcaaactatatacctcagtgatcatcagtagacttagc
accatcattctgaaactacagagttccacttaggttttacattttgactg
tctgcacacacacatacacacacacacacacacacacacacacatacaca
cacacacacacacacacacacacagagagagagagagggggggatgtttg
aatgactttcttaaactgtctatgtgatgtttttatttgtgaattaatta
gaaaaacaaaatcttaaaaagagaaaatgacaagaataaaaaatccctgg
aagttctatcattctggacagaattaacattcattttcttattatgacaa
taaatctgttatcaaggaccacaaatgccttgggtgagctgtcctttggc
gtttgagaaggaaaccattttgcttggcttgtttatcatggtacaagtgt
tgagtgttgctggataaggctttctcttgagagacttgcatttagtctcc
tcttttctactcattccctaacctatactattcataaacaattatcttct
attttttttaaatataatgttactttatgtgtttattattgttctattca
gatctgtccccatttcatctaaccgttacatttttagtaacaataaaatg
tatactttcatccaagtaggtaacttatgtattctgaatatttcccctaa
attttctaccattcatattcagatgacatgacatgacttcatctggtggt
tcacacaaagttgcatagcaggcttcactgagtaatgctcactgctcact
tgctaggattttatctcctttgcttctttgcctggatgaacacattgcct
atctgaatctgccccatgacaacatcacgtactagactcttcttgcttat
taaaatgtcaaaaaatatatctttgaccccataactcttatcctagaaaa
aaaaactcacatttaaattctcccagcctaaatttgtgaaaaatggttct
ggatttcctccttttgttaatagcacagcactcaataatttccacaaagt
aatgcacaactgatgtgctgctaatgaaaccgtctattgggaaggctggg
cctttccctggcaccaacttactaaagaaacttctaggcattttcaagat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25938281_25939449
seq2: B6Ng01-213C09.b_49_1203

seq1  GAATTCCATTTAGCTACAGGAAGCATTCTTTGTGGTTCCCTGCTGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGCTACAGGAAGCATTCTTTGTGGTTCCCTGCTGCTCAT  50

seq1  TTATAGTGCAGACCAGTTATACTCAGAACAAGTGTGCGCATAGAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGCAGACCAGTTATACTCAGAACAAGTGTGCGCATAGAGCAGAT  100

seq1  CTATGTGAGGCAACATCATGGAGGTTGTTGTGCTAAAAGCCACAATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAGGCAACATCATGGAGGTTGTTGTGCTAAAAGCCACAATTGTT  150

seq1  GATTTCATAGATGACTTCAACAAGAGCCAGATGGAATATACAAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATAGATGACTTCAACAAGAGCCAGATGGAATATACAAAAACAAA  200

seq1  ACACACAAACTGCTTACAAAGACTGTTTCTCACATGGTTATCAACAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACTGCTTACAAAGACTGTTTCTCACATGGTTATCAACAAGGG  250

seq1  ACTCTAGACCATATTTTTTAAAACATCTTTAAGGAGCTGGTTAGCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGACCATATTTTTTAAAACATCTTTAAGGAGCTGGTTAGCAATTA  300

seq1  AAGGAGAATTAAAAGAGGCACACGTTTTGTAGCAAACAATAAAAGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTAAAAGAGGCACACGTTTTGTAGCAAACAATAAAAGCTAAG  350

seq1  GGTGTGGGAGAGACTGAAAGAGGGAAAAAGCACAGGCATTGATTAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGAGAGACTGAAAGAGGGAAAAAGCACAGGCATTGATTAGATGT  400

seq1  ATCAGAAAAGCTTCAGTGATGGGGAGACATAAATTCAAGCTTCAAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAAGCTTCAGTGATGGGGAGACATAAATTCAAGCTTCAAGAAAT  450

seq1  GGGCTAAAGAGCGATTGGGAGAAAAGGCAAAGAAGCTTCCAGATGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAGAGCGATTGGGAGAAAAGGCAAAGAAGCTTCCAGATGGGAGA  500

seq1  ACAGCATGAGCAGAAGAAAAGAGTAGGAGTCTAGTCCCCAAATGTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGAGCAGAAGAAAAGAGTAGGAGTCTAGTCCCCAAATGTTATTT  550

seq1  CAAGTTCCCCTTCTTACAAGCCAACAATGGCTCCCAATTATCCCTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCCCTTCTTACAAGCCAACAATGGCTCCCAATTATCCCTGCATA  600

seq1  TAATTAAGATTCCTAATCACAGGCTTCAAACCTTCCACTCCTCCATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGATTCCTAATCACAGGCTTCAAACCTTCCACTCCTCCATCCCT  650

seq1  AGACACCCATCTAATACTTGAATCAGGCGTTTCAGCCTGATACACACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCATCTAATACTTGAATCAGGCGTTTCAGCCTGATACACACTCC  700

seq1  ACAGACTTTTCATCAGCATTACACAATGTCCACAGCTTCCATAGCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTTTCATCAGCATTACACAATGTCCACAGCTTCCATAGCTTCTC  750

seq1  CTAAGAAATGTTCCCCAAGGCACCACACCATGTTCAGCCTTTATTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAATGTTCCCCAAGGCACCACACCATGTTCAGCCTTTATTTCAGA  800

seq1  AGATGGCTTAAACTGATCATTTCTTTCATAGGCTTCCTCCACTAACCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTTAAACTGATCATTTCTTTCATAGGCTTCCTCCACTAACCTAT  850

seq1  CTCTGCTCTGAGCCCCATAGACAAACTTCAATTAGTCACATTTTTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTGAGCCCCATAGACAAACTTCAATTAGTCACATTTTTGTTTC  900

seq1  CTGTGGTCTTAGAACTCAAATCTACAC-TTAAATTGTACTCAATACTGCT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTGGTCTTAGAACTCAAATCTACACTTTAAATTGTACTCAATACTGCT  950

seq1  CTCAAGAAAGGCACAAACTATACCCTTCATTAACTAGATTAGATGAGGAG  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCAAGAAAGGCACAAACTATACCCTTCATT-ACTAGATTAGATGAGGAG  999

seq1  GCCCTTGAACCTTGAGCACAATCAAGGATGCTTGGCTCTCCTTATACACT  1049
      ||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||
seq2  GCCCTTG-ACCTTGAGCAC-ATCAA-GATGCTT-GCTCT-CTTATACACT  1044

seq1  TCATGTATGTATTCACCAATTGTTTGTTGGTAACACTGATCAAATATTTT  1099
      |||||||||||||||||||||||||||  |||||||||||| ||||||||
seq2  TCATGTATGTATTCACCAATTGTTTGT--GTAACACTGATC-AATATTTT  1091

seq1  AATTTTTTAGCCTACAGAATCTTTGCACTTCAGAGAATAAGCAAACAGTG  1149
       | |||||||||||||||||||||||||||| ||||   ||| |||||||
seq2  -ACTTTTTAGCCTACAGAATCTTTGCACTTC-GAGA--TAGC-AACAGTG  1136

seq1  ATTCAGATAGTGTGTGAATA  1169
      | |||||| |||||||||||
seq2  AATCAGAT-GTGTGTGAATA  1155


seq1: chr3_26094054_26095192
seq2: B6Ng01-213C09.g_64_1214 (reverse)

seq1  TATCTTGAAAATG-CTAGAAGTT--CTTAGTAGGTT-GTGCCAGGGAA--  44
      ||||||||||||| |||||||||   |||||| ||| |||||||||||  
seq2  TATCTTGAAAATGCCTAGAAGTTTCTTTAGTAAGTTGGTGCCAGGGAAAG  50

seq1  GCCCAG-CTTCCAAAT-GACAGATTTCATTAGCAGCACATCCGTTGTGC-  91
      |||||| ||||| ||| ||| | |||||||||||||||||| ||||||| 
seq2  GCCCAGCCTTCCCAATAGAC-GGTTTCATTAGCAGCACATCAGTTGTGCA  99

seq1  TATCTTTGTGGAAAATTATTGAGTGCTGTGCTATTAGACAAAAGTAGAAA  141
      |  |||||||| |||||||||||||||||||||||| ||||||| || ||
seq2  TTACTTTGTGG-AAATTATTGAGTGCTGTGCTATTA-ACAAAAGGAGGAA  147

seq1  AT-CAGAA-CATATGTCACAAAATTA-GCTGGGAG-ATATAAATGTGAGT  187
      || ||||| ||| | ||||||| ||| |||||||| || |||||||||||
seq2  ATCCAGAACCATTTTTCACAAATTTAGGCTGGGAGAATTTAAATGTGAGT  197

seq1  TTTTTTTTCTAGGATAAGAGTT-TGGGTTCAAAGATATATTTTTTGACAT  236
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TTTTTTTTCTAGGATAAGAGTTATGGGGTCAAAGATATATTTTTTGACAT  247

seq1  TTTAATAAGCAAGAAGAGTCTAGTACGTGATGTTGTCATGGGGCAGATTC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGCAAGAAGAGTCTAGTACGTGATGTTGTCATGGGGCAGATTC  297

seq1  AGATAGGCAATGTGTTCATCCAGGCAAAGAAGCAAAGGAGATAAAATCCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCAATGTGTTCATCCAGGCAAAGAAGCAAAGGAGATAAAATCCT  347

seq1  AGC-AGTGAGCAGTGAGCATTACTCAGTGAAGCCTGCTATGCAACTTTGT  385
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGAGCAGTGAGCATTACTCAGTGAAGCCTGCTATGCAACTTTGT  397

seq1  GTGAACCACCAGATGAAGTCATGTCATGTCATCTGAATATGAATGGTAGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCACCAGATGAAGTCATGTCATGTCATCTGAATATGAATGGTAGA  447

seq1  AAATTTAGGGGAAATATTCAGAATACATAAGTTACCTACTTGGATGAAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGGGAAATATTCAGAATACATAAGTTACCTACTTGGATGAAAG  497

seq1  TATACATTTTATTGTTACTAAAAATGTAACGGTTAGATGAAATGGGGACA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTATTGTTACTAAAAATGTAACGGTTAGATGAAATGGGGACA  547

seq1  GATCTGAATAGAACAATAATAAACACATAAAGTAACATTATATTTAAAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAATAGAACAATAATAAACACATAAAGTAACATTATATTTAAAAA  597

seq1  AAATAGAAGATAATTGTTTATGAATAGTATAGGTTAGGGAATGAGTAGAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGATAATTGTTTATGAATAGTATAGGTTAGGGAATGAGTAGAA  647

seq1  AAGAGGAGACTAAATGCAAGTCTCTCAAGAGAAAGCCTTATCCAGCAACA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGACTAAATGCAAGTCTCTCAAGAGAAAGCCTTATCCAGCAACA  697

seq1  CTCAACACTTGTACCATGATAAACAAGCCAAGCAAAATGGTTTCCTTCTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACTTGTACCATGATAAACAAGCCAAGCAAAATGGTTTCCTTCTC  747

seq1  AAACGCCAAAGGACAGCTCACCCAAGGCATTTGTGGTCCTTGATAACAGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCAAAGGACAGCTCACCCAAGGCATTTGTGGTCCTTGATAACAGA  797

seq1  TTTATTGTCATAATAAGAAAATGAATGTTAATTCTGTCCAGAATGATAGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTCATAATAAGAAAATGAATGTTAATTCTGTCCAGAATGATAGA  847

seq1  ACTTCCAGGGATTTTTTATTCTTGTCATTTTCTCTTTTTAAGATTTTGTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGGATTTTTTATTCTTGTCATTTTCTCTTTTTAAGATTTTGTT  897

seq1  TTTCTAATTAATTCACAAATAAAAACATCACATAGACAGTTTAAGAAAGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTAATTCACAAATAAAAACATCACATAGACAGTTTAAGAAAGT  947

seq1  CATTCAAACATCCCCCCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACATCCCCCCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  997

seq1  TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  1047

seq1  CAGACAGTCAAAATGTAAAACCTAAGTGGAACTCTGTAGTTTCAGAATGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCAAAATGTAAAACCTAAGTGGAACTCTGTAGTTTCAGAATGA  1097

seq1  TGGTGCTAAGTCTACTGATGATCACTGAGGTATATAGTTTGAGCCAGTGA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTAAGTCTACTGATGATCACTGAGGTATATAGTTTGAGCCAGTGA  1147

seq1  ATTC  1139
      ||||
seq2  ATTC  1151


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