BAC Information

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BAC

Clone NameB6Ng01-213M11
Chromosome3 (Build37)
Map Location 117,682,140 - 117,834,445
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213M11.bB6Ng01-213M11.g
ACCGA031208GA031209
length1,1091,118
definitionB6Ng01-213M11.b B6Ng01-213M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,833,324 - 117,834,445)(117,682,140 - 117,683,257)
sequence
gaattctttagaatgctttagctttcatcttattggaggctcccatgtca
aattagcaaaatggttcagctacgtaggtggtagtacacaaccagatgaa
ctttgctacagggacctcctacaagagcattaaatttggggattcaattt
ttcttcacttggctctgttttgttttgttctgttttgttttgttttgttt
tgttttgttttgttttgttttgttttttacatcctcagtagacaatcgtg
tttatcttcttctttggtatgcttgtatccaggtgactctgtgcagatat
atttgacaaatagcatctgacccatcaatttcagcagaggctccaagatg
tagacttacaggtcctccataccttggaagagctgaagtgatggggaaaa
aactgacataggggccacaaactgacacttataggacagagatttgcata
gactctaaaggctggtgacagttgatgacaagaaacatttgaacagagga
tcctgggtcaatatattgtctcattaataaaataaaaataaaaaaaataa
aataaacacacacacccttggcatagtgggatgtttctatattccaaaga
atgaggaaacagagataatctctgaggattgctggaggcccagatgagtt
tgttaagctctagggcaatggaaatcctatctcaaaaataatataacttt
tgtggttagtgtatgtatgatttcaaggctgactattctgcattgaacag
caatcaggatactcatccctcgaggacactaactctcctcctcccagcag
gcataagatgcctgcaaagttctttttctaggagcaggaccttgtaaaat
tccctctttctcattaatgtgtctattgtagggccattgttgaagtattt
tttatgcaaccattttttaaggcagacaattacacagtagattgtattgg
ttcaccaatacagagtggtcagccttaaatctatatacatacctccaaca
aaattggatttatcagtatatcatatatatttgtgcatgcacaacacaga
cgcacacacgacaacacacatattaatatatatatatatgcccaccacca
tatatatac

gaattctcagaaatcaccccatcagatcttgcagcacttacagtgagaac
gtactttttcttcctcctttaagaaatgagtgttatggtgacatgaaggg
catctcctcactagcaatccattgttacctcttactttgtaaaagggaag
aaagaatttctacttacttcccttaatttttttttatctccagctaaata
tatccagcaatctggctccaacctccagccactactaacactgttaaacc
tctcctcctgtaacatttcttttagcatttatctgcacaatgcactagac
atttggtctcccagtctggtagtgtcaagtaagagttggggccaaataca
ggtgtgatgtcaggggggtcttctactctgggaaagaattgatcttgatt
tctgagagtttgttagttcccattaaaggaaaattaggtaaaaagaactc
ccatattttctttcaccaaaatggcatttacagtgaagcctttaccagaa
tcaagtggttcctacttccaagcatttgaatatccaggacagttaccaaa
aacaaacttcttataaggcgtatagccatgggtattttattatagccaca
gaaaacaaaacaaaacactttcctcagtacatcaaaaacgattgatggtt
atttatgctttccatttaaaggtttttatctcctgtttgaaaaagctata
ggtatagcaaatattgggtaattacaaatgtgataatataaaaaaatata
tagatcttttcccaggggcctgtggattctgattaggttcctaaaagaca
gatttgtgtgaatgtgttcagactcagcaatccgacttcattaaaagcac
aggagatgtttagataccagaactactttacttatctttttatataaaaa
tacattttgtaagactactttcagggctttgcctttggttgagaaaaata
atgatgtatatttagacagagatttttctcaggggtaattatactttgga
acattaaaataggtatgtcatctcttttcagatgaacattatttggtggt
gacatgtcagaaggatgttatatgtttctttaaaaataggaggggcaaga
aacaatttttattatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117833324_117834445
seq2: B6Ng01-213M11.b_47_1155 (reverse)

seq1  GTATATATATGTGTGTGTGTACATATATATATATATATATATATATATGT  50
      ||||||||||| ||| |||  |||||||||||||||     || ||||||
seq2  GTATATATATG-GTG-GTGGGCATATATATATATAT-----TA-ATATGT  42

seq1  GTGTGTGT-GTGTGTGTGTGTGTGTGTGTGCATGCACAAATATATATGAA  99
      |||| ||| ||||||| || ||||| |||||||||||||||||||||| |
seq2  GTGT-TGTCGTGTGTGCGTCTGTGT-TGTGCATGCACAAATATATATG-A  89

seq1  TATAACCTGATAAATCCAATTTTGTTGGAGGTATGTATATAGATTTAAGG  149
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATA--CTGATAAATCCAATTTTGTTGGAGGTATGTATATAGATTTAAGG  137

seq1  CTGACCACTCTGTATTGGTGAACCAATACAATCTACTGTGTAATTGTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACTCTGTATTGGTGAACCAATACAATCTACTGTGTAATTGTCTG  187

seq1  CCTTAAAAAATGGTTGCATAAAAAATACTTCAACAATGGCCCTACAATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAAATGGTTGCATAAAAAATACTTCAACAATGGCCCTACAATAG  237

seq1  ACACATTAATGAGAAAGAGGGAAATTTTACAAGGTCCTGCTCCTAGAAAA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACATTAATGAGAAAGAGGG-AATTTTACAAGGTCCTGCTCCTAGAAAA  286

seq1  AGAACTTTGCAGGCATCTTATGCCTGCTGGGAGGAGGAGAGTTAGTGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGCAGGCATCTTATGCCTGCTGGGAGGAGGAGAGTTAGTGTCC  336

seq1  TCGAGGGATGAGTATCCTGATTGCTGTTCAATGCAGAATAGTCAGCCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGATGAGTATCCTGATTGCTGTTCAATGCAGAATAGTCAGCCTTG  386

seq1  AAATCATACATACACTAACCACAAAAGTTATATTATTTTTGAGATAGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATACATACACTAACCACAAAAGTTATATTATTTTTGAGATAGGAT  436

seq1  TTCCATTGCCCTAGAGCTTAACAAACTCATCTGGGCCTCCAGCAATCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCCCTAGAGCTTAACAAACTCATCTGGGCCTCCAGCAATCCTC  486

seq1  AGAGATTATCTCTGTTTCCTCATTCTTTGGAATATAGAAACATCCCACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATCTCTGTTTCCTCATTCTTTGGAATATAGAAACATCCCACTA  536

seq1  TGCCAAGGGTGTGTGTGTTTATTTTATTTTTTTTATTTTTATTTTATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGGTGTGTGTGTTTATTTTATTTTTTTTATTTTTATTTTATTAA  586

seq1  TGAGACAATATATTGACCCAGGATCCTCTGTTCAAATGTTTCTTGTCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATATATTGACCCAGGATCCTCTGTTCAAATGTTTCTTGTCATC  636

seq1  AACTGTCACCAGCCTTTAGAGTCTATGCAAATCTCTGTCCTATAAGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCACCAGCCTTTAGAGTCTATGCAAATCTCTGTCCTATAAGTGTC  686

seq1  AGTTTGTGGCCCCTATGTCAGTTTTTTCCCCATCACTTCAGCTCTTCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGCCCCTATGTCAGTTTTTTCCCCATCACTTCAGCTCTTCCAA  736

seq1  GGTATGGAGGACCTGTAAGTCTACATCTTGGAGCCTCTGCTGAAATTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGAGGACCTGTAAGTCTACATCTTGGAGCCTCTGCTGAAATTGAT  786

seq1  GGGTCAGATGCTATTTGTCAAATATATCTGCACAGAGTCACCTGGATACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGATGCTATTTGTCAAATATATCTGCACAGAGTCACCTGGATACA  836

seq1  AGCATACCAAAGAAGAAGATAAACACGATTGTCTACTGAGGATGTAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACCAAAGAAGAAGATAAACACGATTGTCTACTGAGGATGTAAAAA  886

seq1  ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAGAACAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAGAACAAA  936

seq1  ACAAAACAGAGCCAAGTGAAGAAAAATTGAATCCCCAAATTTAATGCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAGCCAAGTGAAGAAAAATTGAATCCCCAAATTTAATGCTCT  986

seq1  TGTAGGAGGTCCCTGTAGCAAAGTTCATCTGGTTGTGTACTACCACCTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGGTCCCTGTAGCAAAGTTCATCTGGTTGTGTACTACCACCTAC  1036

seq1  GTAGCTGAACCATTTTGCTAATTTGACATGGGAGCCTCCAATAAGATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGAACCATTTTGCTAATTTGACATGGGAGCCTCCAATAAGATGAA  1086

seq1  AGCTAAAGCATTCTAAAGAATTC  1122
      |||||||||||||||||||||||
seq2  AGCTAAAGCATTCTAAAGAATTC  1109


seq1: chr3_117682140_117683257
seq2: B6Ng01-213M11.g_67_1184

seq1  GAATTCTCAGAAATCACCCCATCAGATCTTGCAGCACTTACAGTGAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATCACCCCATCAGATCTTGCAGCACTTACAGTGAGAAC  50

seq1  GTACTTTTTCTTCCTCCTTTAAGAAATGAGTGTTATGGTGACATGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTCTTCCTCCTTTAAGAAATGAGTGTTATGGTGACATGAAGGG  100

seq1  CATCTCCTCACTAGCAATCCATTGTTACCTCTTACTTTGTAAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCACTAGCAATCCATTGTTACCTCTTACTTTGTAAAAGGGAAG  150

seq1  AAAGAATTTCTACTTACTTCCCTTAATTTTTTTTTATCTCCAGCTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTCTACTTACTTCCCTTAATTTTTTTTTATCTCCAGCTAAATA  200

seq1  TATCCAGCAATCTGGCTCCAACCTCCAGCCACTACTAACACTGTTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCAATCTGGCTCCAACCTCCAGCCACTACTAACACTGTTAAACC  250

seq1  TCTCCTCCTGTAACATTTCTTTTAGCATTTATCTGCACAATGCACTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTGTAACATTTCTTTTAGCATTTATCTGCACAATGCACTAGAC  300

seq1  ATTTGGTCTCCCAGTCTGGTAGTGTCAAGTAAGAGTTGGGGCCAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCTCCCAGTCTGGTAGTGTCAAGTAAGAGTTGGGGCCAAATACA  350

seq1  GGTGTGATGTCAGGGGGGTCTTCTACTCTGGGAAAGAATTGATCTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATGTCAGGGGGGTCTTCTACTCTGGGAAAGAATTGATCTTGATT  400

seq1  TCTGAGAGTTTGTTAGTTCCCATTAAAGGAAAATTAGGTAAAAAGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGTTTGTTAGTTCCCATTAAAGGAAAATTAGGTAAAAAGAACTC  450

seq1  CCATATTTTCTTTCACCAAAATGGCATTTACAGTGAAGCCTTTACCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTCTTTCACCAAAATGGCATTTACAGTGAAGCCTTTACCAGAA  500

seq1  TCAAGTGGTTCCTACTTCCAAGCATTTGAATATCCAGGACAGTTACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGTTCCTACTTCCAAGCATTTGAATATCCAGGACAGTTACCAAA  550

seq1  AACAAACTTCTTATAAGGCGTATAGCCATGGGTATTTTATTATAGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTCTTATAAGGCGTATAGCCATGGGTATTTTATTATAGCCACA  600

seq1  GAAAACAAAACAAAACACTTTCCTCAGTACATCAAAAACGATTGATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAACAAAACACTTTCCTCAGTACATCAAAAACGATTGATGGTT  650

seq1  ATTTATGCTTTCCATTTAAAGGTTTTTATCTCCTGTTTGAAAAAGCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTTTCCATTTAAAGGTTTTTATCTCCTGTTTGAAAAAGCTATA  700

seq1  GGTATAGCAAATATTGGGTAATTACAAATGTGATAATATAAAAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGCAAATATTGGGTAATTACAAATGTGATAATATAAAAAAATATA  750

seq1  TAGATCTTTTCCCAGGGGCCTGTGGATTCTGATTAGGTTCCTAAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTTTCCCAGGGGCCTGTGGATTCTGATTAGGTTCCTAAAAGACA  800

seq1  GATTTGTGTGAATGTGTTCAGACTCAGCAATCCGACTTCATTAAAAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGTGAATGTGTTCAGACTCAGCAATCCGACTTCATTAAAAGCAC  850

seq1  AGGAGATGTTTAGATACCAGAACTACTTTACTTATCTTTTTATATAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGTTTAGATACCAGAACTACTTTACTTATCTTTTTATATAAAAA  900

seq1  TACATTTTGTAAGACTACTTTCAGGGCTTTGCCTTTGGTTGAGAAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGTAAGACTACTTTCAGGGCTTTGCCTTTGGTTGAGAAAAATA  950

seq1  ATGATGTATATTTAGACAGAGATTTTTCTCAGGGGTAATTATACTTTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTATATTTAGACAGAGATTTTTCTCAGGGGTAATTATACTTTGGA  1000

seq1  ACATTAAATAAGTTATGTCATCTCTTTTTCAGATTGACATTATTTG--TG  1048
      ||||||||  || ||||||||||| |||||||||  ||||||||||   |
seq2  ACATTAAAATAGGTATGTCATCTC-TTTTCAGATGAACATTATTTGGTGG  1049

seq1  TGACATTGTCAG-AGGATG-TATATGTTTCTTTAAAAATAGGAGGGGAAA  1096
      ||||| |||||| |||||| ||||||||||||||||||||||||||| ||
seq2  TGACA-TGTCAGAAGGATGTTATATGTTTCTTTAAAAATAGGAGGGGCAA  1098

seq1  GAAACATTTTTATATTGATGAT  1118
      |||||| |||| |||| |||||
seq2  GAAACAATTTT-TATT-ATGAT  1118


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