BAC Information

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BAC

Clone NameB6Ng01-214E14
Chromosome3 (Build37)
Map Location 122,393,369 - 122,530,452
singlet/doubletdoublet
Overlap genePde5a
Upstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214E14.bB6Ng01-214E14.g
ACCGA031576GA031577
length1,0021,196
definitionB6Ng01-214E14.b B6Ng01-214E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,393,369 - 122,394,369)(122,529,250 - 122,530,452)
sequence
gaattctccaagatggggtcaacaatgtcgaggcaatggcacccggcctc
tcactaggctgtcaaaatctaaaaacaagagtggaaatgtaggagaaata
gcacagttgcttctacctaaaagccgtgcagccgtaaaggcatttcctac
aggaggacctaattgaagactgcttgagtcaccaaggattgctgacggca
gacaatgccagccaatcgggaactgctatttggaagagatgctttcctgg
gaccaatggggcgtgggtggaggatattaaaggagcttgcagcagcattc
agatgagcttgttgcagcgtttctcacctgctcctggagtctgtgtcatg
gattccgcaacacctcacctccaaccgccaagggcaggtagggttggcag
caagtagcccagggcgcaggcagcacccatgggacaattgattgacagtg
ttatttaatggtgtagaaattgcctttgttctttatgtctttaaatagct
tgttttccattaatttacttataaactttacatcctcgtcatagctcccc
tttctcttttcctcccagccccatcctccccacttccttttagagagggg
aacaccaccacccccatgccaacctgccctggtacatcaactctcatcag
acctaaggcactctctcccactgaggccggacaaggtaggccagctaagg
gaaagggatccaaaggcaggcaactgagttcaactcggagacagcccctg
ctccaactgttgggagacccacatgtagaccaggctgcacatctgctaat
atgagcaggggacctaggtccagtcccctgactgctctttgattaggggt
tcaatctctgtgagcccccatggtcccaggttccttggctctgtaggtct
tcttagggtaatccttgacccctctgactccctcaatccttccactttct
cttccgcgagacccccgatctccactgatgttttgactgtggtctctgca
tc
gaattcctccttcccgtccatcaagaaagggtacgtggaagcagtgccct
taaatagatcacgggataccagtgggattcctcggcaatttcagtcttcc
tactaaaggaaggaagcaaggagccaacagtggtccaagggagtggcctc
ctacccaagaaaagccttacctcaaagtagcttccccaaagtcatttcgg
aagaagcaggaagattcagcttcccagaggaagatgtcactttcccattc
ccttaccaatgaatacccccttctctctggttagctgcgcttacttctgt
accttccttttgtattttttattatgtgtcacttcggacatcttgtgggg
tctggtactgtatgcccctctagaagaaataactttatatggtgatgctt
acagtacctctccgcctcaagtgtccacttgacactttatatcctgctta
ccagctctactttaagtaccggtcattaccagtcaggaaggaaaaagtcc
tgttttcctgtactcaaagcacagtgacctgggaagaaataagtctctga
actactttagtttttttccaagagttactaccttgtgtgtgtgaaagtaa
gactctacaatctaagtgccccctgccctctgcccagctcctagacccag
gaatttttacctagagagaagacactatctctccaggtgtacttctgggt
aaattgttttagatgaacaaaatttaatagatttataaaaaaacggttta
aaatagtaactattttttaaatttttaaatgagactagagttgcattttt
ttcttatttttcacttatatagagcaacatgagagcaatttctacaaaaa
aaatagcggtatatgaactaataacaagctgtttttttctgggtaaagca
aggggatagccatgtgcatgtatgggctgacacatatgggttcacaccct
gtgacacactgtggtcttctctgttgctaccttccctttcgtcagcatga
ctcatgtgacactctggatctcagtcatataggcccactgacaaaggaca
tgccaccaagttactctccagatcttctaggtttccagttgaaacagccc
agcctggacagggcaggactgttctcttcctcaatgtggtaggcacagcc
aggacgtgtgccatctgcaatctcttacccaagtcttctggtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122393369_122394369
seq2: B6Ng01-214E14.b_46_1047

seq1  GAATTCTCCAAGATGGGGTCAACAATGTCGAGGCAATGGCACCCGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGATGGGGTCAACAATGTCGAGGCAATGGCACCCGGCCTC  50

seq1  TCACTAGGCTGTCAAAATCTAAAAACAAGAGTGGAAATGTAGGAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGCTGTCAAAATCTAAAAACAAGAGTGGAAATGTAGGAGAAATA  100

seq1  GCACAGTTGCTTCTACCTAAAAGCCGTGCAGCCGTAAAGGCATTTCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTGCTTCTACCTAAAAGCCGTGCAGCCGTAAAGGCATTTCCTAC  150

seq1  AGGAGGACCTAATTGAAGACTGCTTGAGTCACCAAGGATTGCTGACGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACCTAATTGAAGACTGCTTGAGTCACCAAGGATTGCTGACGGCA  200

seq1  GACAATGCCAGCCAATCGGGAACTGCTATTTGGAAGAGATGCTTTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCCAGCCAATCGGGAACTGCTATTTGGAAGAGATGCTTTCCTGG  250

seq1  GACCAATGGGGCGTGGGTGGAGGATATTAAAGGAGCTTGCAGCAGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGGGCGTGGGTGGAGGATATTAAAGGAGCTTGCAGCAGCATTC  300

seq1  AGATGAGCTTGTTGCAGCGTTTCTCACCTGCTCCTGGAGTCTGTGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCTTGTTGCAGCGTTTCTCACCTGCTCCTGGAGTCTGTGTCATG  350

seq1  GATTCCGCAACACCTCACCTCCAACCGCCAAGGGCAGGTAGGGTTGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCGCAACACCTCACCTCCAACCGCCAAGGGCAGGTAGGGTTGGCAG  400

seq1  CAAGTAGCCCAGGGCGCAGGCAGCACCCATGGGACAATTGATTGACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGCCCAGGGCGCAGGCAGCACCCATGGGACAATTGATTGACAGTG  450

seq1  TTATTTAATGGTGTAGAAATTGCCTTTGTTCTTTATGTCTTTAAATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATGGTGTAGAAATTGCCTTTGTTCTTTATGTCTTTAAATAGCT  500

seq1  TGTTTTCCATTAATTTACTTATAAACTTTACATCCTCGTCATAGCTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCATTAATTTACTTATAAACTTTACATCCTCGTCATAGCTCCCC  550

seq1  TTTCTCTTTTCCTCCCAGCCCCATCCTCCCCACTTCCTTTTAGAGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTCCTCCCAGCCCCATCCTCCCCACTTCCTTTTAGAGAGGGG  600

seq1  AACACCACCACCCCCATGCCAACCTGCCCTGGTACATCAACTCTCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACCACCCCCATGCCAACCTGCCCTGGTACATCAACTCTCATCAG  650

seq1  ACCTAAGGCACTCTCTCCCACTGAGGCCGGACAAGGTAGGCCAGCTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGCACTCTCTCCCACTGAGGCCGGACAAGGTAGGCCAGCTAAGG  700

seq1  GAAAGGGATCCAAAGGCAGGCAACTGAGTTCAACTCGGAGACAGCCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATCCAAAGGCAGGCAACTGAGTTCAACTCGGAGACAGCCCCTG  750

seq1  CTCCAACTGTTGGGAGACCCACATGTAGACCAGGCTGCACATCTGCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTGTTGGGAGACCCACATGTAGACCAGGCTGCACATCTGCTAAT  800

seq1  ATGAGCAGGGGACCTAGGTCCAGT-CCCTGACTGCTCTTTGATTAGGGGT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGAGCAGGGGACCTAGGTCCAGTCCCCTGACTGCTCTTTGATTAGGGGT  850

seq1  TCAATCTCTGTGAGCCCCCATGGTCCCAGGTTCCTTGGCTCTGTAGGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCTGTGAGCCCCCATGGTCCCAGGTTCCTTGGCTCTGTAGGTCT  900

seq1  TCTTAGGGT-ATCCTTGACCCCTCTGACTCCCTCAATCCTTCCACTTTCT  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGTAATCCTTGACCCCTCTGACTCCCTCAATCCTTCCACTTTCT  950

seq1  CTTCCGCGAGACCCCCGATCTCCACCTGATG-TTTGACTGTGGGTCTCTG  997
      |||||||||||||||||||||||| |||||| ||||||||| ||||||||
seq2  CTTCCGCGAGACCCCCGATCTCCA-CTGATGTTTTGACTGT-GGTCTCTG  998

seq1  CATC  1001
      ||||
seq2  CATC  1002

seq1: chr3_122529250_122530452
seq2: B6Ng01-214E14.g_63_1258 (reverse)

seq1  ATAAA-CAGAAGACTTGGTGTAAGAAGAATTGCAAGGATGTGCAACCACG  49
      ||||| |||||||||||| ||||||   ||||||  |||| |||  ||||
seq2  ATAAACCAGAAGACTTGG-GTAAGA--GATTGCA--GATG-GCA--CACG  42

seq1  TCCTGGGCTGTGCTTTACACAATGAG--AGAGAACAGTCTTG-CCTGTCC  96
      |||| |||||||| |  |||| ||||  ||||||||||| || ||||| |
seq2  TCCT-GGCTGTGCCTACCACATTGAGGAAGAGAACAGTCCTGCCCTGT-C  90

seq1  CAGGCT-GGCTGTTTCCACTTGAAAACCTAG-AGATCTGGAGAAGTAACT  144
      |||||| ||||||||| || || |||||||| |||||||||| |||||||
seq2  CAGGCTGGGCTGTTTCAAC-TGGAAACCTAGAAGATCTGGAG-AGTAACT  138

seq1  TGGTGGCATGTCCTTTGTCAGTGGGCCTTATATGACTGAGATCCAGAGTG  194
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTGGCATGTCCTTTGTCAGTGGGCC-TATATGACTGAGATCCAGAGTG  187

seq1  TCACATGAGTCATGCTGACGAAAGGG-AGGTAGCAACAGGAGAAGACCCA  243
      |||||||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  TCACATGAGTCATGCTGACGAAAGGGAAGGTAGCAACA-GAGAAGA-CCA  235

seq1  CAGTGTGTCACAGGGTGTG-ACCCATATGTGTCAGCCCATACATGCACAT  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGTGTGTCACAGGGTGTGAACCCATATGTGTCAGCCCATACATGCACAT  285

seq1  GGCTATCCCCCTGCCTTACCCAGAAAAAAACAGCTTGTTATTAGTTCATA  342
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  GGCTATCCCCTTGCTTTACCCAGAAAAAAACAGCTTGTTATTAGTTCATA  335

seq1  TACCGCTATTTTTTTTGTAGAAATTGCTCTCATGTTGCTCTATATAAGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCTATTTTTTTTGTAGAAATTGCTCTCATGTTGCTCTATATAAGTG  385

seq1  AAAAATAAGAAAAAAATGCAACTCTAGTCTCATTTAAAAATTTAAAAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGAAAAAAATGCAACTCTAGTCTCATTTAAAAATTTAAAAAAT  435

seq1  AGTTACTATTTTAAACCGTTTTTTTATAAATCTATTAAATTTTGTTCATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTATTTTAAACCGTTTTTTTATAAATCTATTAAATTTTGTTCATC  485

seq1  TAAAACAATTTACCCAGAAGTACACCTGGAGAGATAGTGTCTTCTCTCTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATTTACCCAGAAGTACACCTGGAGAGATAGTGTCTTCTCTCTA  535

seq1  GGTAAAAATTCCTGGGTCTAGGAGCTGGGCAGAGGGCAGGGGGCACTTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAATTCCTGGGTCTAGGAGCTGGGCAGAGGGCAGGGGGCACTTAG  585

seq1  ATTGTAGAGTCTTACTTTCACACACACAAGGTAGTAACTCTTGGAAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGAGTCTTACTTTCACACACACAAGGTAGTAACTCTTGGAAAAAA  635

seq1  ACTAAAGTAGTTCAGAGACTTATTTCTTCCCAGGTCACTGTGCTTTGAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTAGTTCAGAGACTTATTTCTTCCCAGGTCACTGTGCTTTGAGT  685

seq1  ACAGGAAAACAGGACTTTTTCCTTCCTGACTGGTAATGACCGGTACTTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAACAGGACTTTTTCCTTCCTGACTGGTAATGACCGGTACTTAA  735

seq1  AGTAGAGCTGGTAAGCAGGATATAAAGTGTCAAGTGGACACTTGAGGCGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCTGGTAAGCAGGATATAAAGTGTCAAGTGGACACTTGAGGCGG  785

seq1  AGAGGTACTGTAAGCATCACCATATAAAGTTATTTCTTCTAGAGGGGCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTGTAAGCATCACCATATAAAGTTATTTCTTCTAGAGGGGCAT  835

seq1  ACAGTACCAGACCCCACAAGATGTCCGAAGTGACACATAATAAAAAATAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACCAGACCCCACAAGATGTCCGAAGTGACACATAATAAAAAATAC  885

seq1  AAAAGGAAGGTACAGAAGTAAGCGCAGCTAACCAGAGAGAAGGGGGTATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGTACAGAAGTAAGCGCAGCTAACCAGAGAGAAGGGGGTATT  935

seq1  CATTGGTAAGGGAATGGGAAAGTGACATCTTCCTCTGGGAAGCTGAATCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTAAGGGAATGGGAAAGTGACATCTTCCTCTGGGAAGCTGAATCT  985

seq1  TCCTGCTTCTTCCGAAATGACTTTGGGGAAGCTACTTTGAGGTAAGGCTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCTTCCGAAATGACTTTGGGGAAGCTACTTTGAGGTAAGGCTT  1035

seq1  TTCTTGGGTAGGAGGCCACTCCCTTGGACCACTGTTGGCTCCTTGCTTCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGTAGGAGGCCACTCCCTTGGACCACTGTTGGCTCCTTGCTTCC  1085

seq1  TTCCTTTAGTAGGAAGACTGAAATTGCCGAGGAATCCCACTGGTATCCCG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGTAGGAAGACTGAAATTGCCGAGGAATCCCACTGGTATCCCG  1135

seq1  TGATCTATTTAAGGGCACTGCTTCCACGTACCCTTTCTTGATGGACGGGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATTTAAGGGCACTGCTTCCACGTACCCTTTCTTGATGGACGGGA  1185

seq1  AGGAGGAATTC  1203
      |||||||||||
seq2  AGGAGGAATTC  1196