BAC Information

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BAC

Clone NameB6Ng01-214O18
Chromosome3 (Build37)
Map Location 89,322,835 - 89,432,355
singlet/doubletdoublet
Overlap geneKcnn3
Upstream gene2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214O18.bB6Ng01-214O18.g
ACCGA032039GA032040
length7181,003
definitionB6Ng01-214O18.b B6Ng01-214O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,322,835 - 89,323,550)(89,431,375 - 89,432,355)
sequence
gaattcatagcactcccccccccaattgctaaggctgtcccaattaaaaa
tggaaataaattcatctctggtcttgtccccttggagagtcttctgcaca
cagtgggagtctaataaatactttatgaggaggagtctgaaccagggaag
ccagcagctgtttccagctctgactctcagagacccatggggcagatcag
acatggagccactgggatttccagtcgtcctcatcgaccctgaggtgact
ccagacccagctgttctggaagaggctggatccaggttactaaaacatcc
tgctttggggaagttggctcttccttgacagattctctttggccctttcc
catccatcatgtggatactatttattgaacagccactgtgtgttgatcat
catgggggggggggagcatctaggcagcggaagaagagtggtggactcag
gctgatctctgctcaaatcctagtgcctttaattacaagctgggtgacaa
gagccatatttcttatctgcgtgtgagtgggcttcttttctttccttttt
ccttcttttatttctttttttaggatgatgacgtcacttcatagggttga
tgtgaggattggaaataacagaggctcctgtacacagcgcaggtgctctg
acagtggtaggtaggtgagcttctccctgtcaggagtgggtccctttctg
ctttctgtcagtttatgc
gaattctaggaggctaagtttgcagctgttagaaagccatggagagagaa
agaggtcactgtagaggcatctgggccaggcagaggacagagctagcctt
tgccctcgtggcagaggtatgggactatgctatctccttcttcggtgttc
ccactggcctgaccaccacatattttcaagcaaagggtgtccaagtgttg
gggaggtggaccataagtcctcaggagcttgctcaggtctgcccttccca
ctgccaagtccctgaaacttccctttgtatgattagctggaaggttctgg
aatacttctcagaggctgaagctcagtcttgtgaaggaaaggatggagag
agccaatcacacccaacttcgcccctcaagaggaattttcttgctggata
ggcttttaagtcttcaaagatggcacaccctaccacccatgagagcagtc
cctggaagcagggctcctggctgggacttaggccacaacctcaggccact
tctataaccacataggggggccactgttagaactctttttccctgcctcc
tgaactaagaggtgcttgctggaagaaaatgaggggcagggcaaagataa
gatgacccacagagatttctgtcaactgcagtgcctggaggaaggtgtga
tctgtgctgcttgggacctatcacttggggcctactgtcctcatgtagat
gaagggtggggggctgtgggtacgggcccctccatctcagagtggctgtg
atctttggagcactgtcttgctttccacccagcagcccacaccagcaggg
cagactgagcaataccaagcatctacagcaccctcggccctttacaggcc
atctttgagaagacagattcataagcggctggtcttgaatctgcacatga
tcacactcaggcttgggtgcagatgcttttacccactgagccctttctct
ggcccggtttcatttattatatttattattaatttattatttattttgta
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89322835_89323550
seq2: B6Ng01-214O18.b_50_767

seq1  GAATTCATAGCACTCCCCCCCCCAATTGCTAAGGCTGTCCCAATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCACTCCCCCCCCCAATTGCTAAGGCTGTCCCAATTAAAAA  50

seq1  TGGAAATAAATTCATCTCTGGTCTTGTCCCCTTGGAGAGTCTTCTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAATTCATCTCTGGTCTTGTCCCCTTGGAGAGTCTTCTGCACA  100

seq1  CAGTGGGAGTCTAATAAATACTTTATGAGGAGGAGTCTGAACCAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAGTCTAATAAATACTTTATGAGGAGGAGTCTGAACCAGGGAAG  150

seq1  CCAGCAGCTGTTTCCAGCTCTGACTCTCAGAGACCCATGGGGCAGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTGTTTCCAGCTCTGACTCTCAGAGACCCATGGGGCAGATCAG  200

seq1  ACATGGAGCCACTGGGATTTCCAGTCGTCCTCATCGACCCTGAGGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGCCACTGGGATTTCCAGTCGTCCTCATCGACCCTGAGGTGACT  250

seq1  CCAGACCCAGCTGTTCTGGAAGAGGCTGGATCCAGGTTACTAAAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCAGCTGTTCTGGAAGAGGCTGGATCCAGGTTACTAAAACATCC  300

seq1  TGCTTTGGGGAAGTTGGCTCTTCCTTGACAGATTCTCTTTGGCCCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGGAAGTTGGCTCTTCCTTGACAGATTCTCTTTGGCCCTTTCC  350

seq1  CATCCATCATGTGGATACTATTTATTGAACAGCCACTGTGTGTTGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCATGTGGATACTATTTATTGAACAGCCACTGTGTGTTGATCAT  400

seq1  CATGGGGGGGGGGGAGCATCTAGGCAGCGGAAGAAGAGTGGTGGACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGGGGGGGAGCATCTAGGCAGCGGAAGAAGAGTGGTGGACTCAG  450

seq1  GCTGATCTCTGCTCAAATCCTAGTGCCTTTAATTACAAGCTGGGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCTGCTCAAATCCTAGTGCCTTTAATTACAAGCTGGGTGACAA  500

seq1  GAGCCATATTTCTTATCTGCGTGTGAGTGGGCTTCTTTTCTTTCCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATATTTCTTATCTGCGTGTGAGTGGGCTTCTTTTCTTTCCTTTTT  550

seq1  CCTTCTTTTATTTCTTTTTTTAGGATGATGACGTCACTTCATAGGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTATTTCTTTTTTTAGGATGATGACGTCACTTCATAGGGTTGA  600

seq1  TGTGAGGATTGGAAATAACAGAGGCTCCTGTACACAGCGCAGGTGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGATTGGAAATAACAGAGGCTCCTGTACACAGCGCAGGTGCTCTG  650

seq1  ACAGTGGTAGGTAGGTGAGCTTCTCCCTGTCAGGAGTGGGTCCC-TTCTG  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAGTGGTAGGTAGGTGAGCTTCTCCCTGTCAGGAGTGGGTCCCTTTCTG  700

seq1  C-TTCTGTCAGTTTATGC  716
      | ||||||||||||||||
seq2  CTTTCTGTCAGTTTATGC  718

seq1: chr3_89431375_89432355
seq2: B6Ng01-214O18.g_66_1068 (reverse)

seq1  -------AAATAAA-AATAAATAAATA-----------AAATGAAA-CGG  30
             ||||||| ||||||| ||||           |||||||| |||
seq2  AAATACAAAATAAATAATAAATTAATAATAAATATAATAAATGAAACCGG  50

seq1  GCCAGAGAAAGGGCTCAGTGGGTAAAGGCATCTGCCACCAAGCCTGAGTG  80
      |||||||||||||||||||||||||| ||||||||  |||||||||||||
seq2  GCCAGAGAAAGGGCTCAGTGGGTAAAAGCATCTGCACCCAAGCCTGAGTG  100

seq1  TGATCATGTGCAGATTCAAGACCAGCCGCTTATGAATCTGTCTTCTCAAA  130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTGCAGATTCAAGACCAGCCGCTTATGAATCTGTCTTCTCAAA  150

seq1  GATGGCCTGT-AAGGGCCGAGGGTGCTGTAGATGCTTGGTATTGCTCAGT  179
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTGTAAAGGGCCGAGGGTGCTGTAGATGCTTGGTATTGCTCAGT  200

seq1  CTGCCCTGCTGGTGTGGGCTGCTGGGTGGAAAGCAAGACAGTGCTCCAAA  229
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCTGGTGTGGGCTGCTGGGTGGAAAGCAAGACAGTGCTCCAAA  250

seq1  GATCACAGCCACTCTGAGATGGAGGGGCCCGTACCCACAG-CCCCCACCC  278
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCACAGCCACTCTGAGATGGAGGGGCCCGTACCCACAGCCCCCCACCC  300

seq1  TTCATCTACATGAGGACAGTAGGCCCCAAGTGATAGGTCCCAAGCAGCAC  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTACATGAGGACAGTAGGCCCCAAGTGATAGGTCCCAAGCAGCAC  350

seq1  AGATCACACCTTCCTCCAGGCACTGCAGTTGACAGAAATCTCTGTGGGTC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACACCTTCCTCCAGGCACTGCAGTTGACAGAAATCTCTGTGGGTC  400

seq1  ATCTTATCTTTGCCCTGCCCCTCATTTTCTTCCAGCAAGCACCTCTTAGT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCTTTGCCCTGCCCCTCATTTTCTTCCAGCAAGCACCTCTTAGT  450

seq1  TCAGGAGGCAGGGAAAAAGAGTTCTAACAGTGGCCCCCCTATGTGGTTAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAGGGAAAAAGAGTTCTAACAGTGGCCCCCCTATGTGGTTAT  500

seq1  AGAAGTGGCCTGAGGTTGTGGCCTAAGTCCCAGCCAGGAGCCCTGCTTCC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGCCTGAGGTTGTGGCCTAAGTCCCAGCCAGGAGCCCTGCTTCC  550

seq1  AGGGACTGCTCTCATGGGTGGTAGGGTGTGCCATCTTTGAAGACTTAAAA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCTCTCATGGGTGGTAGGGTGTGCCATCTTTGAAGACTTAAAA  600

seq1  GCCTATCCAGCAAGAAAATTCCTCTTGAGGGGCGAAGTTGGGTGTGATTG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCCAGCAAGAAAATTCCTCTTGAGGGGCGAAGTTGGGTGTGATTG  650

seq1  GCTCTCTCCATCCTTTCCTTCACAAGACTGAGCTTCAGCCTCTGAGAAGT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCCATCCTTTCCTTCACAAGACTGAGCTTCAGCCTCTGAGAAGT  700

seq1  ATTCCAGAACCTTCCAGCTAATCATACAAAGGGAAGTTTCAGGGACTTGG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAACCTTCCAGCTAATCATACAAAGGGAAGTTTCAGGGACTTGG  750

seq1  CAGTGGGAAGGGCAGACCTGAGCAAGCTCCTGAGGACTTATGGTCCACCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAGGGCAGACCTGAGCAAGCTCCTGAGGACTTATGGTCCACCT  800

seq1  CCCCAACACTTGGACACCCTTTGCTTGAAAATATGTGGTGGTCAGGCCAG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACTTGGACACCCTTTGCTTGAAAATATGTGGTGGTCAGGCCAG  850

seq1  TGGGAACACCGAAGAAGGAGATAGCATAGTCCCATACCTCTGCCACGAGG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACACCGAAGAAGGAGATAGCATAGTCCCATACCTCTGCCACGAGG  900

seq1  GCAAAGGCTAGCTCTGTCCTCTGCCTGGCCCAGATGCCTCTACAGTGACC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTAGCTCTGTCCTCTGCCTGGCCCAGATGCCTCTACAGTGACC  950

seq1  TCTTTCTCTCTCCATGGCTTTCTAACAGCTGCAAACTTAGCCTCCTAGAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTCCATGGCTTTCTAACAGCTGCAAACTTAGCCTCCTAGAA  1000

seq1  TTC  981
      |||
seq2  TTC  1003