BAC Information

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BAC

Clone NameB6Ng01-215I05
Chromosome3 (Build37)
Map Location 136,630,930 - 136,773,891
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca, LOC668870
Downstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215I05.bB6Ng01-215I05.g
ACCGA032460GA032461
length1,0751,152
definitionB6Ng01-215I05.b B6Ng01-215I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,630,930 - 136,632,003)(136,772,733 - 136,773,891)
sequence
gaattcttttctgattttttttatacaggaattaataagaggccgccatc
atctgtgtgtgaatcaggaagagaactgacaaaaatctatgtgtcccctt
cttgagaaagctaagatagatgaccttatctcccagacatgcctcttctc
tcttttgttataaaccgaaactaggaatcatgtgaggggtttgaatgact
actggctttctgaaaattgggaggaaaacttggagcaggaagtcagaaac
attggtgctcatgtattcttcctcagtatgtactgtggatgtagagataa
atgaaatagctctcaacatggtggcttttctcttccaattagagaggact
aggaaataataagagtcatgaattcacaggcaagtatacactggttgcta
tggaaaagccaagggcagtcaccagaaggcaaaggatacagatagtttgc
ctattttccacaagaagaattggaagaagtgataaaggtgtcgagtaaga
catttctgtcctggaaacaatcacatacagagcaaggaagtgggcatagt
acgagggctccctcctatcacctcagaaaatgttctaagagatggtaatg
tttcagttgtatccctagaaattctgatttaattcaggattctcaagggg
aacagagaaaaaaaatactagtagactagtttgcatggtatgaactagct
agtttgatgatgagtgcacactggagaggctgagaacctggtagctgctc
tgccctcaaggctggatgcctgagcaattctgatatgatgttgaaggcct
tcatgccctaagatgcatctggtgttttgtccatgttggaatgatgaaga
agcaaggtcctgaggttagcaaagaatggcagcaagaggatagatgcatc
cttctgcagaacgtgaaaggagggcagcaaaagagcacggctttcccctt
taatttcttggtatctgcatgaccaacagaaaggtctgtccatttagagg
aaaaggcaacctatactcagttctcattacttccctggaggaggcattca
cacaaacgtcttagtgactcctgat
gaattccaggaaacattttggtttattggttgttggccttcgttggctgt
gacctcttgcactttggatgacattccaaacatgttaaagtgtcaacgat
aaccagaacgagtaggcagagaggaggagttatgaatcagttttctcccc
caggactaatccagaacacaacatactggaaagcaagctgtggccaagcc
acctgctccagcaccctgccaggcaagttcagtgagccaagatgttgcag
aaagacttcaacccacagtttctgccattgccaggtgtagcagatggcac
ctactggacgtagctgcttgttagcctggggcatctgctcacagggagca
gcctggcagtgcttgatgctactctccccacactcagcttctgtgagtag
atcagaaagccaccaaaacaaggaccagcgtcagaagctgcagtatttga
ccagtggatagaaggtatgaaattggagcctacatttcctaaaaggaagg
acagtacactcttgtagtattcatatttttaagaattttaaataaacttt
taaagattgtagtactctctgtggatgaagcaaagttttccttcgaagaa
gttaactgcggttcacgtgatcaacatccaggaatctaagaatctcctgt
tattttaaaagttgacaaacccgtcctgtttaacaggtccattgacctca
tagtagtgtggatgtgttctcgtggaaccctgggagcgggcagagagggg
acaaagagtgttactgggactctcccacagagaacatctctgtgaacatt
tcctcttgaactgttaataatttcagtgtgggcagagctctgaaattctg
gcaacgtacctgggaagggggctactgttcatgaagctcctgctgaggcc
cgagctcaggttggcggaactgtgtgtgactgtcagagagccccactttc
ccacccacgggagcattctcccacagggtgacatatgcgtggagtcagga
aacaggctccgcttacaggacaccatccacggaagagtttatgttccaaa
tgtccatgggagcatggtgacgtgcggttgaagccttctaatcctctgct
catgtcaaaggtgtatccaaggagcagaatgatggaaatctaaaatgtga
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_136630930_136632003
seq2: B6Ng01-215I05.b_45_1119

seq1  GAATTCTTTTCTGATTTTTTTTATACAGGAATTAATAAGAGGCCGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGATTTTTTTTATACAGGAATTAATAAGAGGCCGCCATC  50

seq1  ATCTGTGTGTGAATCAGGAAGAGAACTGACAAAAATCTATGTGTCCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGTGAATCAGGAAGAGAACTGACAAAAATCTATGTGTCCCCTT  100

seq1  CTTGAGAAAGCTAAGATAGATGACCTTATCTCCCAGACATGCCTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAGCTAAGATAGATGACCTTATCTCCCAGACATGCCTCTTCTC  150

seq1  TCTTTTGTTATAAACCGAAACTAGGAATCATGTGAGGGGTTTGAATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTATAAACCGAAACTAGGAATCATGTGAGGGGTTTGAATGACT  200

seq1  ACTGGCTTTCTGAAAATTGGGAGGAAAACTTGGAGCAGGAAGTCAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTTCTGAAAATTGGGAGGAAAACTTGGAGCAGGAAGTCAGAAAC  250

seq1  ATTGGTGCTCATGTATTCTTCCTCAGTATGTACTGTGGATGTAGAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCTCATGTATTCTTCCTCAGTATGTACTGTGGATGTAGAGATAA  300

seq1  ATGAAATAGCTCTCAACATGGTGGCTTTTCTCTTCCAATTAGAGAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGCTCTCAACATGGTGGCTTTTCTCTTCCAATTAGAGAGGACT  350

seq1  AGGAAATAATAAGAGTCATGAATTCACAGGCAAGTATACACTGGTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAATAAGAGTCATGAATTCACAGGCAAGTATACACTGGTTGCTA  400

seq1  TGGAAAAGCCAAGGGCAGTCACCAGAAGGCAAAGGATACAGATAGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGCCAAGGGCAGTCACCAGAAGGCAAAGGATACAGATAGTTTGC  450

seq1  CTATTTTCCACAAGAAGAATTGGAAGAAGTGATAAAGGTGTCGAGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCACAAGAAGAATTGGAAGAAGTGATAAAGGTGTCGAGTAAGA  500

seq1  CATTTCTGTCCTGGAAACAATCACATACAGAGCAAGGAAGTGGGCATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTCCTGGAAACAATCACATACAGAGCAAGGAAGTGGGCATAGT  550

seq1  ACGAGGGCTCCCTCCTATCACCTCAGAAAATGTTCTAAGAGATGGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGCTCCCTCCTATCACCTCAGAAAATGTTCTAAGAGATGGTAATG  600

seq1  TTTCAGTTGTATCCCTAGAAATTCTGATTTAATTCAGGATTCTCAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGTATCCCTAGAAATTCTGATTTAATTCAGGATTCTCAAGGGG  650

seq1  AACAGAGAAAAAAAATACTAGTAGACTAGTTTGCATGGTATGAACTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAAAAAAATACTAGTAGACTAGTTTGCATGGTATGAACTAGCT  700

seq1  AGTTTGATGATGAGTGCACACTGGAGAGGCTGAGAACCTGGTAGCTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGATGAGTGCACACTGGAGAGGCTGAGAACCTGGTAGCTGCTC  750

seq1  TGCCCTCAAGGCTGGATGCCTGAGCAATTCTGATATGATGTTGAAGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAAGGCTGGATGCCTGAGCAATTCTGATATGATGTTGAAGGCCT  800

seq1  TCATGCCCTAAGATGCATCTGGTGTTTTGTCCATGTTGGAATGATGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCTAAGATGCATCTGGTGTTTTGTCCATGTTGGAATGATGAAGA  850

seq1  AGCAAGGTCCTGAGGTTAGCAAAGAATGGCAGCAAGAGGATAGATGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTCCTGAGGTTAGCAAAGAATGGCAGCAAGAGGATAGATGCATC  900

seq1  CTTCTGCAGAACGTG-AAGGAGGGCAGCAAAAGAGCACGGCTTTCCCC-T  948
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  CTTCTGCAGAACGTGAAAGGAGGGCAGCAAAAGAGCACGGCTTTCCCCTT  950

seq1  TAATTTCTTGGTATCTGCATGACCAACAG-AAGGTCTGTCCA-TTAGAGG  996
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TAATTTCTTGGTATCTGCATGACCAACAGAAAGGTCTGTCCATTTAGAGG  1000

seq1  AAAAGGCCACCTATACTCAGTTCTCATTTAACCTTCCCTGGA-GAGGCAT  1045
      ||||||| ||||||||||||||||||||    |||||||||| |||||||
seq2  AAAAGGCAACCTATACTCAGTTCTCATT---ACTTCCCTGGAGGAGGCAT  1047

seq1  TCACACAAACGTCTTAGTTGACTCCTGAT  1074
      ||||||||||||||||| |||||||||||
seq2  TCACACAAACGTCTTAG-TGACTCCTGAT  1075

seq1: chr3_136772733_136773891
seq2: B6Ng01-215I05.g_68_1219 (reverse)

seq1  CATCACATTTTAGATTCCCATCTATCTGCTCCCTTTGGATACACTCTTTT  50
      |||||||||||||||| |||||  ||||||||  |||||||||| |||| 
seq2  CATCACATTTTAGATTTCCATCATTCTGCTCC--TTGGATACAC-CTTT-  46

seq1  GAACATTGAGCAGAGAATTTAGAA-GCCTCACCCGCACGTTCACATGCT-  98
        ||| ||||||||| | |||||| || ||| ||||||||   |||||| 
seq2  -GACA-TGAGCAGAGGA-TTAGAAGGCTTCAACCGCACGTCACCATGCTC  93

seq1  CCATGGACATTT-GAACATAAACTCTTCCGTGGATTGTGTCCTTGTAAGC  147
      |||||||||||| |||||||||||||||||||||| |||||| |||||||
seq2  CCATGGACATTTGGAACATAAACTCTTCCGTGGATGGTGTCC-TGTAAGC  142

seq1  GGAGCCTGTTTCCTGGACTCCACGGCATATGGTCACCCTGTGGGAG-ATG  196
      |||||||||||||| |||||||| |||||| ||||||||||||||| |||
seq2  GGAGCCTGTTTCCT-GACTCCAC-GCATAT-GTCACCCTGTGGGAGAATG  189

seq1  CTCCCGTGGGTGGGGAAAGTGGGGCTCTCTGACAGTCACACACAGTTTCC  246
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CTCCCGTGGGT-GGGAAAGTGGGGCTCTCTGACAGTCACACACAG-TTCC  237

seq1  GCCAACCTGAGCTCGGGCCTCAGCAGGAGCTTCATGAACAGTAGCCCCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTGAGCTCGGGCCTCAGCAGGAGCTTCATGAACAGTAGCCCCCT  287

seq1  T-CCAGGTACGTTGCCAGAATTTCAGAGCTCTGCCCACACTG-AATTATT  344
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCCAGGTACGTTGCCAGAATTTCAGAGCTCTGCCCACACTGAAATTATT  337

seq1  AACAGTTCAAGAGGAAATGTTCACAGAGATGTTCTCTGTGGGAGAGTCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCAAGAGGAAATGTTCACAGAGATGTTCTCTGTGGGAGAGTCCC  387

seq1  AGTAACACTCTTTGTCCCCTCTCTGCCCGCTCCCAGGGTTCCACGAGAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACTCTTTGTCCCCTCTCTGCCCGCTCCCAGGGTTCCACGAGAAC  437

seq1  ACATCCACACTACTATGAGGTCAATGGACCTGTTAAACAGGACGGGTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACACTACTATGAGGTCAATGGACCTGTTAAACAGGACGGGTTTG  487

seq1  TCAACTTTTAAAATAACAGGAGATTCTTAGATTCCTGGATGTTGATCACG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTAAAATAACAGGAGATTCTTAGATTCCTGGATGTTGATCACG  537

seq1  TGAACCGCAGTTAACTTCTTCGAAGGAAAACTTTGCTTCATCCACAGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGCAGTTAACTTCTTCGAAGGAAAACTTTGCTTCATCCACAGAGA  587

seq1  GTACTACAATCTTTAAAAGTTTATTTAAAATTCTTAAAAATATGAATACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACAATCTTTAAAAGTTTATTTAAAATTCTTAAAAATATGAATACT  637

seq1  ACAAGAGTGTACTGTCCTTCCTTTTAGGAAATGTAGGCTCCAATTTCATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGTACTGTCCTTCCTTTTAGGAAATGTAGGCTCCAATTTCATA  687

seq1  CCTTCTATCCACTGGTCAAATACTGCAGCTTCTGACGCTGGTCCTTGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATCCACTGGTCAAATACTGCAGCTTCTGACGCTGGTCCTTGTTT  737

seq1  TGGTGGCTTTCTGATCTACTCACAGAAGCTGAGTGTGGGGAGAGTAGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTTTCTGATCTACTCACAGAAGCTGAGTGTGGGGAGAGTAGCAT  787

seq1  CAAGCACTGCCAGGCTGCTCCCTGTGAGCAGATGCCCCAGGCTAACAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGCCAGGCTGCTCCCTGTGAGCAGATGCCCCAGGCTAACAAGC  837

seq1  AGCTACGTCCAGTAGGTGCCATCTGCTACACCTGGCAATGGCAGAAACTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACGTCCAGTAGGTGCCATCTGCTACACCTGGCAATGGCAGAAACTG  887

seq1  TGGGTTGAAGTCTTTCTGCAACATCTTGGCTCACTGAACTTGCCTGGCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAAGTCTTTCTGCAACATCTTGGCTCACTGAACTTGCCTGGCAG  937

seq1  GGTGCTGGAGCAGGTGGCTTGGCCACAGCTTGCTTTCCAGTATGTTGTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAGCAGGTGGCTTGGCCACAGCTTGCTTTCCAGTATGTTGTGT  987

seq1  TCTGGATTAGTCCTGGGGGAGAAAACTGATTCATAACTCCTCCTCTCTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTAGTCCTGGGGGAGAAAACTGATTCATAACTCCTCCTCTCTGC  1037

seq1  CTACTCGTTCTGGTTATCGTTGACACTTTAACATGTTTGGAATGTCATCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCGTTCTGGTTATCGTTGACACTTTAACATGTTTGGAATGTCATCC  1087

seq1  AAAGTGCAAGAGGTCACAGCCAACGAAGGCCAACAACCAATAAACCAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAAGAGGTCACAGCCAACGAAGGCCAACAACCAATAAACCAAAA  1137

seq1  TGTTTCCTGGAATTC  1159
      |||||||||||||||
seq2  TGTTTCCTGGAATTC  1152