BAC Information

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BAC

Clone NameB6Ng01-215I20
Chromosome15 (Build37)3 (Build37)
Map Location 53,820,819 - 53,820,878147,804,208 - 147,805,314
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneExt1, Samd12, EG665097
Downstream geneEG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215I20.bB6Ng01-215I20.g
ACCGA032482GA032483
length2491,090
definitionB6Ng01-215I20.b B6Ng01-215I20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,820,819 - 53,820,878)(147,804,208 - 147,805,314)
sequence
tcagcctggaatgtggtatctccatcaaatgcctcccattagagtccaag
gaagctctgaggaggagaaggcagaaagtgtaagaacttgaggggataga
gaacaccaagaacacacagcgctctaaataaacatgaacaaaacgcatga
gctcagggacactgaagcagcacacattgtgtctgcaaagatttacatca
ggtcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcttgactgtgttttacttcttttttaaactctgtagccattttta
aaaaatcacctaaatattccataattctaccttcccattactaaatatga
gattttgttatcaacccattaattctatgtaaaggatggaataacatagt
tcttcacttaatcatgtccatattaaaaaggaaaaaaatgttttatttta
tttagaaagtatctctaagggaaaaaataatcttcttgctcaatataatg
ctcgctacgtgaaattcttctgctgttttattgctctctttcccttgtat
atatttcatgtcactagcaagtaacaagattgcattgacatttttgacag
gaatgggaagaaacttgcagatggtgtttattgcaacttgtggctagcta
aaagtaaggattagttacccaagataaaatatagtgtctatatacagtta
tttatctttgttgtaataagaaatgtacctgtttgttttaatatctgtca
attgaaggaggaagtcatgaggtgtgattgtccagccactcaatactgac
cgctaaactaatgatccaaatgacaaaaaaatattcatctgtaaagtttt
ggagtatttcttaggttttttatttttattttctgaaacaaagtgaacct
tgccataatttatataaataacaaccctcaaataatagaaacatcttatc
tgttcctggaatttcacctttaattttgcttagcttttgagtttggactt
cttttttttttttttttcatagtctacttggcattgtctttctttcaaac
tgcaggataccaccacacaaggcacaagctccttgttctcagactttcgt
tttccatattttataaaacacacacaatgaagtctgtactctaactcata
atcacatgtacatcactgcttatttgaaaatctctacattgactcaagaa
attgctctatatctcaatgtatctgaactgtggaaactctctttcatgtt
ttccacataacaaaatcaggctacttcattagacagcacattatcattga
tgctttattcatctcaatccattgggtgcatacccataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53820819_53820878
seq2: B6Ng01-215I20.b_238_301 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACAGAGG----  46
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  CACACACACACACACACACACACACACACACACACACACACAGAGGACCT  50

seq1  CAGGTGAATCTTTG  60
       | || ||||||||
seq2  GATGTAAATCTTTG  64


seq1: chr3_147804208_147805314
seq2: B6Ng01-215I20.g_67_1156 (reverse)

seq1  ATTATGGGTATGCACACAATTGAATGGAGGATGGAAAATTAAAAGCATCA  50
      ||||||||||||||| |||| || ||   ||||   |||  |||||||||
seq2  ATTATGGGTATGCACCCAATGGATTG--AGATG---AAT--AAAGCATCA  43

seq1  TATGATAATGTGGCTGTCTAATGAAGTAGGCCTGATTTTGTTAATGTGGA  100
       |||||||||| |||||||||||||||| ||||||||||||| |||||| 
seq2  -ATGATAATGT-GCTGTCTAATGAAGTA-GCCTGATTTTGTT-ATGTGG-  88

seq1  AAAACATGAAAGAGGAGTTTCCACAGTTCAAGATAACATTTGAGATATAG  150
      ||||||||||||| ||||||||||||||| |||| ||| |||||||||||
seq2  AAAACATGAAAGA-GAGTTTCCACAGTTC-AGAT-ACA-TTGAGATATAG  134

seq1  AGCAAATTTCTTGAGTCAATGTAGAGATTTTCAAATAAGCAGTGATGTAC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGC-AATTTCTTGAGTCAATGTAGAGATTTTCAAATAAGCAGTGATGTAC  183

seq1  ATGTGATTATGAGTTAGAGTACAGACTTCATTGTGTGTGTTTTATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTATGAGTTAGAGTACAGACTTCATTGTGTGTGTTTTATAAAAT  233

seq1  ATGGAAAACGAAAGTCTGAGAACAAGGAGCTTGTGCCTTGTGTGGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACGAAAGTCTGAGAACAAGGAGCTTGTGCCTTGTGTGGTGGTA  283

seq1  TCCTGCAGTTTGAAAGAAAGACAATGCCAAGTAGACTATGAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGTTTGAAAGAAAGACAATGCCAAGTAGACTATGAAAAAAAAAA  333

seq1  AAAAAAGAAGTCCAAACTCAAAAGCTAAGCAAAATTAAAGGTGAAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGTCCAAACTCAAAAGCTAAGCAAAATTAAAGGTGAAATTCC  383

seq1  AGGAACAGATAAGATGTTTCTATTATTTGAGGGTTGTTATTTATATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGATAAGATGTTTCTATTATTTGAGGGTTGTTATTTATATAAAT  433

seq1  TATGGCAAGGTTCACTTTGTTTCAGAAAATAAAAATAAAAAACCTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAGGTTCACTTTGTTTCAGAAAATAAAAATAAAAAACCTAAGAA  483

seq1  ATACTCCAAAACTTTACAGATGAATATTTTTTTGTCATTTGGATCATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAAAACTTTACAGATGAATATTTTTTTGTCATTTGGATCATTAG  533

seq1  TTTAGCGGTCAGTATTGAGTGGCTGGACAATCACACCTCATGACTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCGGTCAGTATTGAGTGGCTGGACAATCACACCTCATGACTTCCTC  583

seq1  CTTCAATTGACAGATATTAAAACAAACAGGTACATTTCTTATTACAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTGACAGATATTAAAACAAACAGGTACATTTCTTATTACAACAA  633

seq1  AGATAAATAACTGTATATAGACACTATATTTTATCTTGGGTAACTAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATAACTGTATATAGACACTATATTTTATCTTGGGTAACTAATCC  683

seq1  TTACTTTTAGCTAGCCACAAGTTGCAATAAACACCATCTGCAAGTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTAGCTAGCCACAAGTTGCAATAAACACCATCTGCAAGTTTCTT  733

seq1  CCCATTCCTGTCAAAAATGTCAATGCAATCTTGTTACTTGCTAGTGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTGTCAAAAATGTCAATGCAATCTTGTTACTTGCTAGTGACAT  783

seq1  GAAATATATACAAGGGAAAGAGAGCAATAAAACAGCAGAAGAATTTCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATACAAGGGAAAGAGAGCAATAAAACAGCAGAAGAATTTCACG  833

seq1  TAGCGAGCATTATATTGAGCAAGAAGATTATTTTTTCCCTTAGAGATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGCATTATATTGAGCAAGAAGATTATTTTTTCCCTTAGAGATACT  883

seq1  TTCTAAATAAAATAAAACATTTTTTTCCTTTTTAATATGGACATGATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATAAAATAAAACATTTTTTTCCTTTTTAATATGGACATGATTAA  933

seq1  GTGAAGAACTATGTTATTCCATCCTTTACATAGAATTAATGGGTTGATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACTATGTTATTCCATCCTTTACATAGAATTAATGGGTTGATAA  983

seq1  CAAAATCTCATATTTAGTAATGGGAAGGTAGAATTATGGAATATTTAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTCATATTTAGTAATGGGAAGGTAGAATTATGGAATATTTAGGT  1033

seq1  GATTTTTTAAAAATGGCTACAGAGTTTAAAAAAGAAGTAAAACACAGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAAAATGGCTACAGAGTTTAAAAAAGAAGTAAAACACAGTCA  1083

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1090


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