BAC Information

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BAC

Clone NameB6Ng01-215K04
Chromosome3 (Build37)
Map Location 148,846,589 - 148,966,082
singlet/doubletdoublet
Overlap geneLOC668893
Upstream geneLOC100040354, Lphn2, LOC100040368
Downstream geneEG381483, LOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K04.bB6Ng01-215K04.g
ACCGA032541GA032542
length8061,116
definitionB6Ng01-215K04.b B6Ng01-215K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,965,278 - 148,966,082)(148,846,589 - 148,847,719)
sequence
gaattccataaaaagctcactaacctggaacgcaccttatgtacacagag
gacctggtgaagatgcgtacagaccctgtgcgtactgcttcagtctctgg
gagttcatatgagctctgttcatgtcgatttagaggccatattcttctgc
tgctctatcccctctggcccttacactctatttccgataggtgtgattct
taagtgacttttaaaaataaatgtaaaggactggggagatcactctgtcg
gtaaagtgtgagttgtaatagcatgatgacctgagttgatcagtagcacc
cacattaaactttaaaaaaaagatgaggggtgagggttaggaaagatggc
tcaactgttaagagcactcctggaacttgcagaggacccaggttcaagtc
ctagcaccctcttgatgatatatctgtaactctagttccagatatatgag
catgataagaaaataaatctgaagattaatgagccaggcctgctgggcta
aatttgatctccagaacccacatagagatgaaggggggggagggacatag
ttcacgtagttcattgactgccacacgtgttatggcacacacacacatac
acatgcttaaaaataataatcacagtaaatagtaacgacagtcataagac
aacactacacttaaaaaaaactgaatatagactgagatgaaccaaagata
gaggcagtagtgcattttatgtggtgacttttttatatttaggcttttag
attagcatgtatgtatgtatgtatgtatgaatgtttgtatgtatgtatga
atgtat
gaattcttttaaataatgaaaacaaagtattttttaaataacttccacag
aagtttttttttttttttggactctaatgtgataatattttctaaatcat
aagggcagggcagctaaaagctccgaggaaaaaaaaccaaaattaacatc
cttttggggaaaaaaatcaactccaaaagaaaaaaaaaatagcaatatat
cttgtttgccttctacaatttaatttacaaaatggcaaatcggttatttt
attgacatgttaccacagagaaaaacagccagaccttagactaaaggagt
ttattaacaagacttccggagtcttattcattaatttggttggctgctga
caaacagaagaaaatcaacagctctggataaaataatcatccagggcttc
gatgtctgtaaacgatttaaattcctgacattgaatatttatagtgagcc
atgagcctttgacagtcaccatatttcagccggctctcggctcccaacac
agacacaaacccagaggtttcctgatggatcttcagcccctcgcctctct
tggtcgtttggtctgtgtcaccatgagataagggacacccagagtgttac
tgacagtctcctaagacctcaccccctgcctggtggtcctccctccccag
aactatagttcagatgcatgaggccctctgccctttcagcggcagccctg
tgggatagttctacacttatcaccgcgatcacaaatcagcattggcttcc
atcctccggcttcaagagcctactctgccaggcagcagagacagcatttc
ggccgcagatgtgaccggttaactgtacaagcaaagaggggaaatccacg
caacaatacttcattcagcgagggagtctgcagcggattacagcttctct
ctgcttaagtctggtcttaatttactgcttttattcagtttcaaccacaa
cgagccccttatgaggtattcactaagcagattgacactctttttatcta
cttgaaaatattttgatatattatggttacaaaatatttagcaggttgaa
cacttatcatgctttcgatgctaaccgtgccagtatccctgttaaaaaaa
tagtataatatggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148965278_148966082
seq2: B6Ng01-215K04.b_42_847 (reverse)

seq1  ATACATTCATACATACATACAAACATTCATACATACATACATACATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCATACATACATACAAACATTCATACATACATACATACATACAT  50

seq1  GCTAATCTAAAAGCCTAAATATAAAAAAGTCACCACATAAAATGCACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTAAAAGCCTAAATATAAAAAAGTCACCACATAAAATGCACTAC  100

seq1  TGCCTCTATC-TTGGTTCATCTCAGTCTATATTCAGTTTTTTTTAAGTGT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTATCTTTGGTTCATCTCAGTCTATATTCAGTTTTTTTTAAGTGT  150

seq1  AGTGTTGTCTTATGACTGTCGTTACTATTTACTGTGATTATTATTTTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTCTTATGACTGTCGTTACTATTTACTGTGATTATTATTTTTAA  200

seq1  GCATGTGTATGTGTGTGTGTGCCATAACACGTGTGGCAGTCAATGAACTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTATGTGTGTGTGTGCCATAACACGTGTGGCAGTCAATGAACTA  250

seq1  CGTGAACTATGTCCCTCCCCCCCCTTCATCTCTATGTGGGTTCTGGAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACTATGTCCCTCCCCCCCCTTCATCTCTATGTGGGTTCTGGAGAT  300

seq1  CAAATTTAGCCCAGCAGGCCTGGCTCATTAATCTTCAGATTTATTTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGCCCAGCAGGCCTGGCTCATTAATCTTCAGATTTATTTTCTT  350

seq1  ATCATGCTCATATATCTGGAACTAGAGTTACAGATATATCATCAAGAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTCATATATCTGGAACTAGAGTTACAGATATATCATCAAGAGGG  400

seq1  TGCTAGGACTTGAACCTGGGTCCTCTGCAAGTTCCAGGAGTGCTCTTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGACTTGAACCTGGGTCCTCTGCAAGTTCCAGGAGTGCTCTTAAC  450

seq1  AGTTGAGCCATCTTTCCTAACCCTCACCCCTCATCTTTTTTTTAAAGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCCATCTTTCCTAACCCTCACCCCTCATCTTTTTTTTAAAGTTT  500

seq1  AATGTGGGTGCTACTGATCAACTCAGGTCATCATGCTATTACAACTCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTGCTACTGATCAACTCAGGTCATCATGCTATTACAACTCACA  550

seq1  CTTTACCGACAGAGTGATCTCCCCAGTCCTTTACATTTATTTTTAAAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCGACAGAGTGATCTCCCCAGTCCTTTACATTTATTTTTAAAAGT  600

seq1  CACTTAAGAATCACACCTATCGGAAATAGAGTGTAAGGGCCAGAGGGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGAATCACACCTATCGGAAATAGAGTGTAAGGGCCAGAGGGGAT  650

seq1  AGAGCAGCAGAAGAATATGGCCTCTAAATCGACATGAACAGAGCTCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCAGAAGAATATGGCCTCTAAATCGACATGAACAGAGCTCATAT  700

seq1  GAACTCCCAGAGACTGAAGCAGTACGCACAGGGTCTGTACGCATCTTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCAGAGACTGAAGCAGTACGCACAGGGTCTGTACGCATCTTCAC  750

seq1  CAGGTCCTCTGTGTACATAAGGTGCGTTCCAGGTTAGTGAGCTTTTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTCTGTGTACATAAGGTGCGTTCCAGGTTAGTGAGCTTTTTATG  800

seq1  GAATTC  805
      ||||||
seq2  GAATTC  806

seq1: chr3_148846589_148847719
seq2: B6Ng01-215K04.g_64_1179

seq1  GAATTCTTTTAAATAATGAAAACAAAGTATTTTTTAAATAACTTCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATAATGAAAACAAAGTATTTTTTAAATAACTTCCACAG  50

seq1  AAGTTTTTTTTTTTTTTTGGACTCTAATGTGATAATATTTTCTAAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTTTTTTTTGGACTCTAATGTGATAATATTTTCTAAATCAT  100

seq1  AAGGGCAGGGCAGCTAAAAGCTCCGAGGAAAAAAAACCAAAATTAACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGGCAGCTAAAAGCTCCGAGGAAAAAAAACCAAAATTAACATC  150

seq1  CTTTTGGGGAAAAAAATCAACTCCAAAAGAAAAAAAAAATAGCAATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGGAAAAAAATCAACTCCAAAAGAAAAAAAAAATAGCAATATAT  200

seq1  CTTGTTTGCCTTCTACAATTTAATTTACAAAATGGCAAATCGGTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGCCTTCTACAATTTAATTTACAAAATGGCAAATCGGTTATTTT  250

seq1  ATTGACATGTTACCACAGAGAAAAACAGCCAGACCTTAGACTAAAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGTTACCACAGAGAAAAACAGCCAGACCTTAGACTAAAGGAGT  300

seq1  TTATTAACAAGACTTCCGGAGTCTTATTCATTAATTTGGTTGGCTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACAAGACTTCCGGAGTCTTATTCATTAATTTGGTTGGCTGCTGA  350

seq1  CAAACAGAAGAAAATCAACAGCTCTGGATAAAATAATCATCCAGGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAAGAAAATCAACAGCTCTGGATAAAATAATCATCCAGGGCTTC  400

seq1  GATGTCTGTAAACGATTTAAATTCCTGACATTGAATATTTATAGTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTAAACGATTTAAATTCCTGACATTGAATATTTATAGTGAGCC  450

seq1  ATGAGCCTTTGACAGTCACCATATTTCAGCCGGCTCTCGGCTCCCAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTTTGACAGTCACCATATTTCAGCCGGCTCTCGGCTCCCAACAC  500

seq1  AGACACAAACCCAGAGGTTTCCTGATGGATCTTCAGCCCCTCGCCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAACCCAGAGGTTTCCTGATGGATCTTCAGCCCCTCGCCTCTCT  550

seq1  TGGTCGTTTGGTCTGTGTCACCATGAGATAAGGGACACCCAGAGTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGTTTGGTCTGTGTCACCATGAGATAAGGGACACCCAGAGTGTTAC  600

seq1  TGACAGTCTCCTAAGACCTCACCCCCTGCCTGGTGGTCCTCCCTCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCTCCTAAGACCTCACCCCCTGCCTGGTGGTCCTCCCTCCCCAG  650

seq1  AACTATAGTTCAGATGCATGAGGCCCTCTGCCCTTTCAGCGGCAGCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGTTCAGATGCATGAGGCCCTCTGCCCTTTCAGCGGCAGCCCTG  700

seq1  TGGGATAGTTCTACACTTATCACCGCGATCACAAATCAGCATTGGCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGTTCTACACTTATCACCGCGATCACAAATCAGCATTGGCTTCC  750

seq1  ATCCTCCGGCTTCAAGAGCCTACTCTGCCAGGCAGCAGAGACAGCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCGGCTTCAAGAGCCTACTCTGCCAGGCAGCAGAGACAGCATTTC  800

seq1  GGCCGCAGATGTGACCGGTTAACTGTACAAGCAAAGAGGGGAAATCCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGATGTGACCGGTTAACTGTACAAGCAAAGAGGGGAAATCCACG  850

seq1  CAACAATACTTCATTCAGCGAGGGAGTCTGCAGCGGATTACAGCTTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATACTTCATTCAGCGAGGGAGTCTGCAGCGGATTACAGCTTCTCT  900

seq1  CTGCTTAAGTCTGGTCTTAATTTACTGCTTTTATTCAGTTTTCAACCACA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  CTGCTTAAGTCTGGTCTTAATTTACTGCTTTTATTCAG-TTTCAACCAC-  948

seq1  AACGAGCCCCTTATGAGGTATTCACTAGGCAGAATTGACAACTCTTTTTA  1000
      ||||||||||||||||||||||||||| |||| |||||| ||||||||||
seq2  AACGAGCCCCTTATGAGGTATTCACTAAGCAG-ATTGAC-ACTCTTTTTA  996

seq1  TCTACTTGAAAAATATTTTTGGATAATAATTTATGGTTACAAAATATTTT  1050
      |||||||| ||||||||||  ||| |||  ||||||||||||||||||| 
seq2  TCTACTTG-AAAATATTTT--GAT-ATA--TTATGGTTACAAAATATTT-  1039

seq1  AAGCAGTTTGAACACTTATCATGCTTTCGATGCTTAACCGTG-CAGTATC  1099
       ||||| |||||||||||||||||||||||||| |||||||| |||||||
seq2  -AGCAGGTTGAACACTTATCATGCTTTCGATGC-TAACCGTGCCAGTATC  1087

seq1  CTCTGTTTAAAAAATAGTAATAATAATGGACT  1131
      | ||||| |||||||||| ||||| |||||||
seq2  C-CTGTTAAAAAAATAGT-ATAAT-ATGGACT  1116