BAC Information

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BAC

Clone NameB6Ng01-215O10
Chromosome3 (Build37)
Map Location 112,632,190 - 112,744,242
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215O10.bB6Ng01-215O10.g
ACCGA032735GA032736
length1,0631,081
definitionB6Ng01-215O10.b B6Ng01-215O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,632,190 - 112,633,066)(112,743,163 - 112,744,242)
sequence
gaattcacaggagaaatgtagagacactctgtagaagtgataaggaatga
agatataaatcactcagtgacagcttactctctcatctctttgcattttc
tactcttgttgaacagaaaagttctgtggcaatcatttaatcaaccagga
gatgcttaaacttatgaacaatctgctctacttctctgaaaaataattct
ttgtactaaaattgaataaaaccaaaatcaaaataaagcaaaaataacag
taaaatataacaaaacaaaaaataaataataccaagagcaaataagtact
gataaaatgtattactgtgcacttgttatccttactgggtgtatttcttc
atctaagtaacactatatgtaaagtggtaaatgtaaatggtgcttttatt
tccttagaagaagaggtgaaagccttaccaagctgtgtaaaaacatgcct
tagacagagcccagaacatttcttgttcttttctgactatccctagacct
aggcttggaaacttcgaacctctatcttctctaatactgtaagatgactg
attcaatcaatcttctctcagcatcagattgaattgctctgcctggactc
acactaactttggcaatctgttttaatctggctccttctaattctctgac
tcctgtcttcacctgtgtctagcttgttctctctgccagctgtgtttgta
aatctgccatacatatacattacaccccataccaccaaccttctgtcatc
tttgctcttgagtaccctctcttttctgtgtggtccttgtatgagttggg
tgtatcctatctttgattaattctgtcaaattgttttctgattagtcact
ttgactgcccctcaattggacttctctttcaaacatgtctgatttcttct
acaaactaacattattttcataggtataaaaaagtgtacactaaagatat
gtccagccagatcatactgtaatccagagcctcctctgcttctcatccaa
atcatatagacatagaaaggttttttagatatgatcacttgagaggagca
cccaagctggtgg

gaattcacacatatcacttctttaagctaatgcgtgtactctttctatag
cccattacaataaagacagaggctattgtcttacattctctaaggagtct
cttttgaatcaattagaattcttaaaggtcgattctaggattgacaaata
aagcagctgcattgtctgatgaagttgatatgagataatcatctgaacaa
ggtcaaaataatatgacttgcctgagagaggtaagagctgtaagacagca
aaaggaagctgctgtgtagggagctaatcaggaattgggcaggaccagaa
cagcatgaaacgcatggattctggcagcaggtgcagagaaaatacaccca
gggtctctattcacagattctacatatatatgaactattaccaagagaaa
ccataccacagtgatttgtcaatacagttgctagacaaggacatcaaata
ggtgggatacaccttcaatagagctgcatcttcaagaggactgttgtcta
atttccttggccttaggccaggtttagttagatttgttgcaattttcact
taacataaagacccccttctcccctctatgaggactctttgttttttgtt
tttgtttgtttgtttgttttgttttatttatttatttatttatttattta
tttatttatttatatgtaagtacactttagctgtcttcagacactccaga
agagggcgtcagatttcgttacagatggttgtgagccaccatgtggttgc
tgggatttgaactcaggacctttggaagagcagtcggcgctcttaaccac
tgagtcatctcaccagcccccgagtactctttaatacatggatgtatatg
atacaactttgaagtgcttctttcttatatcagaactctggaccacatat
ccaagtggaaaggaactagaccttttgtagtgggttggtctgatgcttct
tgtatggtaatgctaaatattgggccctaggctgcctgtctttaagagaa
gagaagttctgcagttagactaaggtgattgctactgatcctgcctagaa
gttattccttgatgtagaataagaatgccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112632190_112633066
seq2: B6Ng01-215O10.b_45_921

seq1  GAATTCACAGGAGAAATGTAGAGACACTCTGTAGAAGTGATAAGGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAGAAATGTAGAGACACTCTGTAGAAGTGATAAGGAATGA  50

seq1  AGATATAAATCACTCAGTGACAGCTTACTCTCTCATCTCTTTGCATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAATCACTCAGTGACAGCTTACTCTCTCATCTCTTTGCATTTTC  100

seq1  TACTCTTGTTGAACAGAAAAGTTCTGTGGCAATCATTTAATCAACCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTTGAACAGAAAAGTTCTGTGGCAATCATTTAATCAACCAGGA  150

seq1  GATGCTTAAACTTATGAACAATCTGCTCTACTTCTCTGAAAAATAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTAAACTTATGAACAATCTGCTCTACTTCTCTGAAAAATAATTCT  200

seq1  TTGTACTAAAATTGAATAAAACCAAAATCAAAATAAAGCAAAAATAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTAAAATTGAATAAAACCAAAATCAAAATAAAGCAAAAATAACAG  250

seq1  TAAAATATAACAAAACAAAAAATAAATAATACCAAGAGCAAATAAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAACAAAACAAAAAATAAATAATACCAAGAGCAAATAAGTACT  300

seq1  GATAAAATGTATTACTGTGCACTTGTTATCCTTACTGGGTGTATTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTATTACTGTGCACTTGTTATCCTTACTGGGTGTATTTCTTC  350

seq1  ATCTAAGTAACACTATATGTAAAGTGGTAAATGTAAATGGTGCTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTAACACTATATGTAAAGTGGTAAATGTAAATGGTGCTTTTATT  400

seq1  TCCTTAGAAGAAGAGGTGAAAGCCTTACCAAGCTGTGTAAAAACATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAAGAAGAGGTGAAAGCCTTACCAAGCTGTGTAAAAACATGCCT  450

seq1  TAGACAGAGCCCAGAACATTTCTTGTTCTTTTCTGACTATCCCTAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAGCCCAGAACATTTCTTGTTCTTTTCTGACTATCCCTAGACCT  500

seq1  AGGCTTGGAAACTTCGAACCTCTATCTTCTCTAATACTGTAAGATGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGAAACTTCGAACCTCTATCTTCTCTAATACTGTAAGATGACTG  550

seq1  ATTCAATCAATCTTCTCTCAGCATCAGATTGAATTGCTCTGCCTGGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCAATCTTCTCTCAGCATCAGATTGAATTGCTCTGCCTGGACTC  600

seq1  ACACTAACTTTGGCAATCTGTTTTAATCTGGCTCCTTCTAATTCTCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACTTTGGCAATCTGTTTTAATCTGGCTCCTTCTAATTCTCTGAC  650

seq1  TCCTGTCTTCACCTGTGTCTAGCTTGTTCTCTCTGCCAGCTGTGTTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTCACCTGTGTCTAGCTTGTTCTCTCTGCCAGCTGTGTTTGTA  700

seq1  AATCTGCCATACATATACATTACACCCCATACCACCAACCTTCTGTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCATACATATACATTACACCCCATACCACCAACCTTCTGTCATC  750

seq1  TTTGCTCTTGAGTACCCTCTCTTTTCTGTGTGGTCCTTGTATGAGTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTGAGTACCCTCTCTTTTCTGTGTGGTCCTTGTATGAGTTGGG  800

seq1  TGTATCCTATCTTTGATTAATTCTGTCAAATTGTTTTCTGATTAGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTATCTTTGATTAATTCTGTCAAATTGTTTTCTGATTAGTCACT  850

seq1  TTGACTGCCCCTCAATTGGACTTCTCT  877
      |||||||||||||||||||||||||||
seq2  TTGACTGCCCCTCAATTGGACTTCTCT  877


seq1: chr3_112743163_112744242
seq2: B6Ng01-215O10.g_67_1147 (reverse)

seq1  TAGGCATCTTTATTCTCCAATCAGGAATAACTTTCTTGGGCAGGATCATG  50
      |||||||  ||||||| ||   |||||||||||   | |||||||||| |
seq2  TAGGCATTCTTATTCTACATCAAGGAATAACTT--CTAGGCAGGATCA-G  47

seq1  TAGC-ATCACTTTAGTCTACATGCAGA--CTCTCTTCTC-TGAAGACAGG  96
      |||| ||||| ||||||||  ||||||   ||||||||| | ||||||||
seq2  TAGCAATCACCTTAGTCTAACTGCAGAACTTCTCTTCTCTTAAAGACAGG  97

seq1  CAGGCCTTAGGGGCCAATATTTAGCATTACAATACAAGAAGCATCAGACC  146
      |||  | ||||| ||||||||||||||||| |||||||||||||||||||
seq2  CAG--CCTAGGGCCCAATATTTAGCATTACCATACAAGAAGCATCAGACC  145

seq1  AACCCACTAC-AAAGGTCTAGTTCC-TTCCACTTGGATATGTGGTCCAGA  194
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AACCCACTACAAAAGGTCTAGTTCCTTTCCACTTGGATATGTGGTCCAGA  195

seq1  GTTCTGATTATAGAAAGAAGCACTTCAAAGTTGTATCATATACATCCATG  244
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATATAAGAAAGAAGCACTTCAAAGTTGTATCATATACATCCATG  245

seq1  TATTAAAGAGTACTCGGGGGCTGGTGAGATGACTCAGTGGTTAAGAGCGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAGTACTCGGGGGCTGGTGAGATGACTCAGTGGTTAAGAGCGC  295

seq1  CGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTG  345

seq1  GCTCACAACCATCTGTAACGAAATCTGACGCCCTCTTCTGGAGTGTCTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGTAACGAAATCTGACGCCCTCTTCTGGAGTGTCTGA  395

seq1  AGACAGCTAAAGTGTACTTACATATAAATAAATAAATAAATAAATAAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTAAAGTGTACTTACATATAAATAAATAAATAAATAAATAAATA  445

seq1  AATAAATAAATAAAACAAAACAAACAAACAAACAAAAACAAAAAACAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAAACAAAACAAACAAACAAACAAAAACAAAAAACAAAG  495

seq1  AGTCCTCATAGAGGGGAGAAGGGGGTCTTTATGTTAAGTGAAAATTGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATAGAGGGGAGAAGGGGGTCTTTATGTTAAGTGAAAATTGCAA  545

seq1  CAAATCTAACTAAACCTGGCCTAAGGCCAAGGAAATTAGACAACAGTCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTAACTAAACCTGGCCTAAGGCCAAGGAAATTAGACAACAGTCCT  595

seq1  CTTGAAGATGCAGCTCTATTGAAGGTGTATCCCACCTATTTGATGTCCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATGCAGCTCTATTGAAGGTGTATCCCACCTATTTGATGTCCTT  645

seq1  GTCTAGCAACTGTATTGACAAATCACTGTGGTATGGTTTCTCTTGGTAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAACTGTATTGACAAATCACTGTGGTATGGTTTCTCTTGGTAAT  695

seq1  AGTTCATATATATGTAGAATCTGTGAATAGAGACCCTGGGTGTATTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATATATATGTAGAATCTGTGAATAGAGACCCTGGGTGTATTTTCT  745

seq1  CTGCACCTGCTGCCAGAATCCATGCGTTTCATGCTGTTCTGGTCCTGCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTGCTGCCAGAATCCATGCGTTTCATGCTGTTCTGGTCCTGCCC  795

seq1  AATTCCTGATTAGCTCCCTACACAGCAGCTTCCTTTTGCTGTCTTACAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGATTAGCTCCCTACACAGCAGCTTCCTTTTGCTGTCTTACAGC  845

seq1  TCTTACCTCTCTCAGGCAAGTCATATTATTTTGACCTTGTTCAGATGATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTCTCTCAGGCAAGTCATATTATTTTGACCTTGTTCAGATGATT  895

seq1  ATCTCATATCAACTTCATCAGACAATGCAGCTGCTTTATTTGTCAATCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATATCAACTTCATCAGACAATGCAGCTGCTTTATTTGTCAATCCT  945

seq1  AGAATCGACCTTTAAGAATTCTAATTGATTCAAAAGAGACTCCTTAGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGACCTTTAAGAATTCTAATTGATTCAAAAGAGACTCCTTAGAGA  995

seq1  ATGTAAGACAATAGCCTCTGTCTTTATTGTAATGGGCTATAGAAAGAGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGACAATAGCCTCTGTCTTTATTGTAATGGGCTATAGAAAGAGTA  1045

seq1  CACGCATTAGCTTAAAGAAGTGATATGTGTGAATTC  1080
      ||||||||||||||||||||||||||||||||||||
seq2  CACGCATTAGCTTAAAGAAGTGATATGTGTGAATTC  1081


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