BAC Information

Click to search

BAC

Clone NameB6Ng01-216B06
Chromosome12 (Build37)3 (Build37)
Map Location 99,222,698 - 99,223,012145,387,927 - 145,388,899
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
Downstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216B06.bB6Ng01-216B06.g
ACCGA032860GA032861
length552979
definitionB6Ng01-216B06.b B6Ng01-216B06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,222,698 - 99,223,012)(145,387,927 - 145,388,899)
sequence
ttcaacaagcttttgttgttcaaaccctgttccttaatttaaaactattg
gttaagtaaaattggctacagccaattactggagggattagaggtaggtg
gttttgagtgacctggtgagggagaagcagggagagaggagagaccacaa
ggagagagagaggaaggcaccatgagaggagaggcattgtgagcacatgg
gcaggagaaacagcaagtatttggggaagacggtcctggtcctgggaggc
cttctttccgatcactttcatgaatcatgagctttcaacccagagcctgt
gttagggttgccaactttaggcaggtgtgtggcttgggaagaagaatttg
tatttatttattcttaacgggattccaggatggccccctttacagtaact
aacttttcatcttggaaaaacatctacaactactattgttaggtgacaat
ttcatctgatcaccttgttgcgtgatttccccatctgtcgaggattgaat
gagtagaatggatttttgaataatgtactccaagggcatacagatgtttt
tc
gaattccatgcactggggatagagcctggtactagaatctggtatttagt
gggcctggtatatgtctgtccagtggacaagtaagctttatagacaacaa
catcctcatgataaagtttccataatgaaatccgtttgatttcagctttc
tcaaggcagggaactcctattaaacaaaagagctaatgtaaagttgtttg
tttgtttggcacgcttagtttcttattttaaaatggataggattctatac
atataaaaatgttttgtgtaaacccgtagcacttacatgaatctttgttc
tattagagccaccaccagggggaatctatcttccggtcaatagttgtgga
cagtgaaaaaccaccgtgtaggggagcagggcgagagggcacgggcactg
agcatcctaacaacttagccacccactggccatctctatagctctgcaga
gagccctaggaagcaagggaggccgggcctgctcataaagaactcagaag
agaactagtgagaactttttcctgcagatcaagtttcagcaagaagattc
ctggccatgtagcttcagcattgcagaagagatggcagtggtcagtagtc
acagtgacaccagtgatgccatgggagacgctgacacatgaggtagcatc
ctaggaggctcaagcaacgagggccctggcagtgggcggggattgagtga
taggcaggcaacagactgcagggtgtctaaccaccagatgtcttcccaga
tgacaagagatttctgggaaccggactggaatcccagcacctgagcatgt
gtggcctcagtcacacacatttctgagcattgtactcaagacccttggag
cacatgtcctgaagtttacagcagcagttcagaaggcttctccgtgttgc
ttagcttgctttgcaaggatggttgcagagggtgcagaaggactgcttct
aggcaggctgggtttccttttgttttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_99222698_99223012
seq2: B6Ng01-216B06.b_283_601

seq1  TCCTGGTCCT-GCCTTCCTTCTTTCTGATCACTTTCATGAATCTTGAGCT  49
      |||||||||| |    ||||||||| ||||||||||||||||| ||||||
seq2  TCCTGGTCCTGGGAGGCCTTCTTTCCGATCACTTTCATGAATCATGAGCT  50

seq1  TTAAAGCCAGAGCCTGTGTTAGGGTTGCCTTCTTTAGGCAGGTGTGTGGC  99
      || || |||||||||||||||||||||||  |||||||||||||||||||
seq2  TTCAACCCAGAGCCTGTGTTAGGGTTGCCAACTTTAGGCAGGTGTGTGGC  100

seq1  TTGGGAAGAAGAATTTGTATTTATTTATTCTTAGCGGGATTCCGGGATGG  149
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTGGGAAGAAGAATTTGTATTTATTTATTCTTAACGGGATTCCAGGATGG  150

seq1  -CCCCTTAACAGTAACTAAGCCACCATCTTGGAAATACATCTACAACTAC  198
       |||||| |||||||||||     ||||||||||| ||||||||||||||
seq2  CCCCCTTTACAGTAACTAACTTTTCATCTTGGAAAAACATCTACAACTAC  200

seq1  CATT-TTATGTGACAATTTCATCTGATCACGATGTTGCGTGATTT-CCCA  246
       ||| ||| |||||||||||||||||||||  ||||||||||||| ||||
seq2  TATTGTTAGGTGACAATTTCATCTGATCACCTTGTTGCGTGATTTCCCCA  250

seq1  GCTG-CGAGGATTGAATGAGTAGAATGGCTTTTTGAATAATGCAACTCCA  295
       ||| ||||||||||||||||||||||| |||||||||||||  ||||||
seq2  TCTGTCGAGGATTGAATGAGTAGAATGGATTTTTGAATAATG-TACTCCA  299

seq1  AGGGCATAGAGATGTTTTTC  315
      |||||||| |||||||||||
seq2  AGGGCATACAGATGTTTTTC  319

seq1: chr3_145387927_145388899
seq2: B6Ng01-216B06.g_70_1048

seq1  GAATTCCATGCACTGGGGATAGAGCCTGGTACTAGAATCTGGTATTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACTGGGGATAGAGCCTGGTACTAGAATCTGGTATTTAGT  50

seq1  GGGCCTGGTATATGTCTGTCCAGTGGACAAGTAAGCTTTATAGACAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGTATATGTCTGTCCAGTGGACAAGTAAGCTTTATAGACAACAA  100

seq1  CATCCTCATGATAAAGTTTCCATAATGAAATCCGTTTGATTTCAGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCATGATAAAGTTTCCATAATGAAATCCGTTTGATTTCAGCTTTC  150

seq1  TCAAGGCAGGGAACTCCTATTAAACAAAAGAGCTAATGTAAAGTTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCAGGGAACTCCTATTAAACAAAAGAGCTAATGTAAAGTTGTTTG  200

seq1  TTTGTTTGGCACGCTTAGTTTCTTATTTTAAAATGGATAGGATTCTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGCACGCTTAGTTTCTTATTTTAAAATGGATAGGATTCTATAC  250

seq1  ATATAAAAATGTTTTGTGTAAACCCGTAGCACTTACATGAATCTTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATGTTTTGTGTAAACCCGTAGCACTTACATGAATCTTTGTTC  300

seq1  TATTAGAGCCACCACCAGGGGGAATCTATCTTCCGGTCAATAGTTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCCACCACCAGGGGGAATCTATCTTCCGGTCAATAGTTGTGGA  350

seq1  CAGTGAAAAACCACCGTGTAGGGGAGCAGGGCGAGAGGGCACGGGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAAACCACCGTGTAGGGGAGCAGGGCGAGAGGGCACGGGCACTG  400

seq1  AGCATCCTAACAACTTAGCCACCCACTGGCCATCTCTATAGCTCTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTAACAACTTAGCCACCCACTGGCCATCTCTATAGCTCTGCAGA  450

seq1  GAGCCCTAGGAAGCAAGGGAGGCCGGGCCTGCTCATAAAGAACTCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGGAAGCAAGGGAGGCCGGGCCTGCTCATAAAGAACTCAGAAG  500

seq1  AGAACTAGTGAGAACTTTTTCCTGCAGATCAAGTTTCAGCAAGAAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGTGAGAACTTTTTCCTGCAGATCAAGTTTCAGCAAGAAGATTC  550

seq1  CTGGCCATGTAGCTTCAGCATTGCAGAAGAGATGGCAGTGGTCAGTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGTAGCTTCAGCATTGCAGAAGAGATGGCAGTGGTCAGTAGTC  600

seq1  ACAGTGACACCAGTGATGCCATGGGAGACGCTGACACATGAGGTAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACACCAGTGATGCCATGGGAGACGCTGACACATGAGGTAGCATC  650

seq1  CTAGGAGGCTCAAGCAACGAGGGCCCTGGCAGTGGGCGGGGATTGAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCTCAAGCAACGAGGGCCCTGGCAGTGGGCGGGGATTGAGTGA  700

seq1  TAGGCAGGCAACAGACTGCAGGGTGTCTAACCACCAGATGTCTTCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGCAACAGACTGCAGGGTGTCTAACCACCAGATGTCTTCCCAGA  750

seq1  TGACAAGAGA-TTCTGGGAACCGGACTGGAATCCCAGCACCTGAGCATGT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAGATTTCTGGGAACCGGACTGGAATCCCAGCACCTGAGCATGT  800

seq1  GTGGCCTCAGTCACACACATTTCTGAGCATTGTACTCAAGACCCTTGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCAGTCACACACATTTCTGAGCATTGTACTCAAGACCCTTGGAG  850

seq1  CACATGTCCTGAAG-TTACAGCAGCAG-TCAGAAGGCTTCTCCGTG-TGC  896
      |||||||||||||| |||||||||||| |||||||||||||||||| |||
seq2  CACATGTCCTGAAGTTTACAGCAGCAGTTCAGAAGGCTTCTCCGTGTTGC  900

seq1  TTAGCTTGCTTTGCAAGGATGG-TGCAGAGGGTGCAG-AGGACTGCTTCT  944
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TTAGCTTGCTTTGCAAGGATGGTTGCAGAGGGTGCAGAAGGACTGCTTCT  950

seq1  AGGCAGGCTTGGTTTCCTTTTGTTTTGTG  973
      ||||||||| |||||||||||||||||||
seq2  AGGCAGGCTGGGTTTCCTTTTGTTTTGTG  979