BAC Information

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BAC

Clone NameB6Ng01-216L15
Chromosome3 (Build37)
Map Location 158,079,618 - 158,152,823
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905, LOC668907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216L15.bB6Ng01-216L15.g
ACCGA033339GA033340
length1,1431,167
definitionB6Ng01-216L15.b B6Ng01-216L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,151,687 - 158,152,823)(158,079,618 - 158,080,766)
sequence
gaattctctagccctgaaaaaggtggctagatttccattaccagatatgt
tttttttttctcttaccaagcagggcttacatataattagagagctatgt
ataccaaggtatgtataccactactgcatttttaagattgccatgccatt
ctagtcatttatgaggttcttagacattgtggctgggcaggacattttgt
tgcttctttcctttgtaaagttgcatgatgtcttctggtaccatgaaagc
tagtcagaggaaggttttgtttagtttgatcggaggaatgttctaagctg
acctggagcttatgataatcctacctcagacttctaaatgctttgatttg
agacatgtgacattttgtttaactttatcgtctgagtttacaggattatt
tcacaaggcaataaatgtttgaatctgagagcaagcagtgaaggaagaat
tgcttttccttgtattttgacattaactcaggaccttgtgtaaacttggg
caagcactctttcttaactatatgagaagcactctttgttttcaagacag
gatcttgctaagttgttcaagctgtcatttagcttaacgagtgtctaaat
accttatttgcttttcctcttaatagcaactattgggtcattttaaccac
tagtgtgcaggaaaacagttaataaaatgtgcctctgatcatgagtacgc
tgggtactgtttactgtggtgatcattctgtttcttccctgcatgtttcc
tatatctttggtgttcttttttaaattatgatttgttgtattgtttaatg
aaatgtaacaatggatgagtatcagtatttgaaagtctaaacatcaaaag
tttctactacatagaaagcaaaaaaaaaaaaaaaaaaaaggaagaaagaa
agtttgtaatcacctactgaagtgaagagagactacagagccctccccaa
tcctaagagctgcagaactagatattggacaagaggaaaatcatcttaac
ttcactgtttctttcttttgtgaaactagttttgcttttctccaatcatg
gatgactttatgattgaaagtataagccattctcttaagaaggaaaatat
ttaacacttggcttgtttgttatgacacataattaagcagctt

gaattccccaaagagtgtgaaataaagttttttaacattgaacttgcaaa
atctgggtggagcaaaccaatgtggtaaaggatctgtatatagagatggg
aaacagaattcacaatattagactagggtcttctcggcctagtttacggt
acaatactagcacactccacagaaggctctgatgagggatagagataaag
acatttaaatttgaaatacagtttgacagaatacagcctttgtattatat
aatcccagaggaggggcactgaccacaagccatgaggcatggaggccttt
tgattgacaagtaagtcatggtttgaatgctcctagaccaagatatttga
agaaattgttttagccatcactagactacttggattttggtggttaaagc
cacagagacacagggtggtaggttaacaaacagactagagctataaccta
aaatgaacaggaaagatcttggtctaagtgtcaagagggacaagaaggtg
ttttatttagacttcaccccaaatgggtttaaatagttcttttcaagtta
gtttccccagaagaaaatattggctgagaccaattttgatgaataaatag
tttattttggtgagactctcagaaaacacaaatataagagtaaaaaacaa
aataagcaagggaaagaagcagacaatggggggatgatatgttctacttg
ggaagctgttatgcttggttatgttccaaggagactctaagagacactgt
gaatgtctttggtccaggtacatggtaggaggcagtcctcaacaggcata
aaatatatattttttttcctattgttaaacaattccttttaaaagtctct
tactagaattcacatgggttggttgtttctttcctttgggagacattttc
cctcaaaattgttcatgttgtatttgaacctttcgttcaatgctttaaat
ttgctattcagaattgaatgtaaacatgttgaagaactgacctgttttgt
ctgaataacatctctgacaaagaagggaagcttgtcaattgtcaaatcaa
tgcatgaatgagacctcccagaagaggagtagtgagaattcctctgccaa
tgggttgaagtaaaggctggtatttggtgacagaatccagttcatgaaga
ccgaattgaatctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158151687_158152823
seq2: B6Ng01-216L15.b_47_1189 (reverse)

seq1  AAGCTGCTTA---ATATGTCATAAC-AACAGCCCAAGTG-TAAATA--TT  43
      ||||||||||   || ||||||||| ||||  ||||||| ||||||  ||
seq2  AAGCTGCTTAATTATGTGTCATAACAAACAAGCCAAGTGTTAAATATTTT  50

seq1  CCTTCTTAAAGAGAATG--CTATACTTTCAATCATATAGTCATCCATGAT  91
      ||||||| |||||||||   |||||||||||||||| |||||||||||||
seq2  CCTTCTT-AAGAGAATGGCTTATACTTTCAATCATAAAGTCATCCATGAT  99

seq1  T-GAGAAAAGCAAAACTAGTTTCACAAAAGAAAGAAACAGTGAAGTT-AG  139
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGAGAAAAGCAAAACTAGTTTCACAAAAGAAAGAAACAGTGAAGTTAAG  149

seq1  ATGATTTTCCTCTTGTCCAATATCTAGTTCTGCAGCTCTTAGGATT-GGG  188
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGATTTTCCTCTTGTCCAATATCTAGTTCTGCAGCTCTTAGGATTGGGG  199

seq1  AGGGCTCTGTAGTCTCTCTTCAC-TCAGTAGGTGATTACAAACTTTCTTT  237
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGGCTCTGTAGTCTCTCTTCACTTCAGTAGGTGATTACAAACTTTCTTT  249

seq1  CTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTCTATGTAGTAGAAA  287
      ||| |      |||||||||||||||||||||||||||||||||||||||
seq2  CTTCC------TTTTTTTTTTTTTTTTTTTTGCTTTCTATGTAGTAGAAA  293

seq1  CTTTTGATGTTTAGACTTTCAAATACTGATACTCATCCATTGTTACATTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATGTTTAGACTTTCAAATACTGATACTCATCCATTGTTACATTT  343

seq1  CATTAAACAATACAACAAATCATAATTTAAAAAAGAACACCAAAGATATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAATACAACAAATCATAATTTAAAAAAGAACACCAAAGATATA  393

seq1  GGAAACATGCAGGGAAGAAACAGAATGATCACCACAGTAAACAGTACCCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGCAGGGAAGAAACAGAATGATCACCACAGTAAACAGTACCCA  443

seq1  GCGTACTCATGATCAGAGGCACATTTTATTAACTGTTTTCCTGCACACTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACTCATGATCAGAGGCACATTTTATTAACTGTTTTCCTGCACACTA  493

seq1  GTGGTTAAAATGACCCAATAGTTGCTATTAAGAGGAAAAGCAAATAAGGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAAATGACCCAATAGTTGCTATTAAGAGGAAAAGCAAATAAGGT  543

seq1  ATTTAGACACTCGTTAAGCTAAATGACAGCTTGAACAACTTAGCAAGATC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACACTCGTTAAGCTAAATGACAGCTTGAACAACTTAGCAAGATC  593

seq1  CTGTCTTGAAAACAAAGAGTGCTTCTCATATAGTTAAGAAAGAGTGCTTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGAAAACAAAGAGTGCTTCTCATATAGTTAAGAAAGAGTGCTTG  643

seq1  CCCAAGTTTACACAAGGTCCTGAGTTAATGTCAAAATACAAGGAAAAGCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTTACACAAGGTCCTGAGTTAATGTCAAAATACAAGGAAAAGCA  693

seq1  ATTCTTCCTTCACTGCTTGCTCTCAGATTCAAACATTTATTGCCTTGTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTTCACTGCTTGCTCTCAGATTCAAACATTTATTGCCTTGTGA  743

seq1  AATAATCCTGTAAACTCAGACGATAAAGTTAAACAAAATGTCACATGTCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCTGTAAACTCAGACGATAAAGTTAAACAAAATGTCACATGTCT  793

seq1  CAAATCAAAGCATTTAGAAGTCTGAGGTAGGATTATCATAAGCTCCAGGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAAGCATTTAGAAGTCTGAGGTAGGATTATCATAAGCTCCAGGT  843

seq1  CAGCTTAGAACATTCCTCCGATCAAACTAAACAAAACCTTCCTCTGACTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGAACATTCCTCCGATCAAACTAAACAAAACCTTCCTCTGACTA  893

seq1  GCTTTCATGGTACCAGAAGACATCATGCAACTTTACAAAGGAAAGAAGCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATGGTACCAGAAGACATCATGCAACTTTACAAAGGAAAGAAGCA  943

seq1  ACAAAATGTCCTGCCCAGCCACAATGTCTAAGAACCTCATAAATGACTAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTCCTGCCCAGCCACAATGTCTAAGAACCTCATAAATGACTAG  993

seq1  AATGGCATGGCAATCTTAAAAATGCAGTAGTGGTATACATACCTTGGTAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATGGCAATCTTAAAAATGCAGTAGTGGTATACATACCTTGGTAT  1043

seq1  ACATAGCTCTCTAATTATATGTAAGCCCTGCTTGGTAAGAGAAAAAAAAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTCTCTAATTATATGTAAGCCCTGCTTGGTAAGAGAAAAAAAAA  1093

seq1  ACATATCTGGTAATGGAAATCTAGCCACCTTTTTCAGGGCTAGAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGGTAATGGAAATCTAGCCACCTTTTTCAGGGCTAGAGAATTC  1143


seq1: chr3_158079618_158080766
seq2: B6Ng01-216L15.g_70_1236

seq1  GAATTCCCCAAAGAGTGTGAAATAAAGTTTTTTAACATTGAACTTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAAGAGTGTGAAATAAAGTTTTTTAACATTGAACTTGCAAA  50

seq1  ATCTGGGTGGAGCAAACCAATGTGGTAAAGGATCTGTATATAGAGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTGGAGCAAACCAATGTGGTAAAGGATCTGTATATAGAGATGGG  100

seq1  AAACAGAATTCACAATATTAGACTAGGGTCTTCTCGGCCTAGTTTACGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATTCACAATATTAGACTAGGGTCTTCTCGGCCTAGTTTACGGT  150

seq1  ACAATACTAGCACACTCCACAGAAGGCTCTGATGAGGGATAGAGATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTAGCACACTCCACAGAAGGCTCTGATGAGGGATAGAGATAAAG  200

seq1  ACATTTAAATTTGAAATACAGTTTGACAGAATACAGCCTTTGTATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAATTTGAAATACAGTTTGACAGAATACAGCCTTTGTATTATAT  250

seq1  AATCCCAGAGGAGGGGCACTGACCACAAGCCATGAGGCATGGAGGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGAGGAGGGGCACTGACCACAAGCCATGAGGCATGGAGGCCTTT  300

seq1  TGATTGACAAGTAAGTCATGGTTTGAATGCTCCTAGACCAAGATATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAAGTAAGTCATGGTTTGAATGCTCCTAGACCAAGATATTTGA  350

seq1  AGAAATTGTTTTAGCCATCACTAGACTACTTGGATTTTGGTGGTTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTTTTAGCCATCACTAGACTACTTGGATTTTGGTGGTTAAAGC  400

seq1  CACAGAGACACAGGGTGGTAGGTTAACAAACAGACTAGAGCTATAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACACAGGGTGGTAGGTTAACAAACAGACTAGAGCTATAACCTA  450

seq1  AAATGAACAGGAAAGATCTTGGTCTAAGTGTCAAGAGGGACAAGAAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACAGGAAAGATCTTGGTCTAAGTGTCAAGAGGGACAAGAAGGTG  500

seq1  TTTTATTTAGACTTCACCCCAAATGGGTTTAAATAGTTCTTTTCAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGACTTCACCCCAAATGGGTTTAAATAGTTCTTTTCAAGTTA  550

seq1  GTTTCCCCAGAAGAAAATATTGGCTGAGACCAATTTTGATGAATAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCAGAAGAAAATATTGGCTGAGACCAATTTTGATGAATAAATAG  600

seq1  TTTATTTTGGTGAGACTCTCAGAAAACACAAATATAAGAGTAAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGGTGAGACTCTCAGAAAACACAAATATAAGAGTAAAAAACAA  650

seq1  AATAAGCAAGGGAAAGAAGCAGACAATGGGGGGATGATATGTTCTACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAAGGGAAAGAAGCAGACAATGGGGGGATGATATGTTCTACTTG  700

seq1  GGAAGCTGTTATGCTTGGTTATGTTCCAAGGAGACTCTAAGAGACACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTTATGCTTGGTTATGTTCCAAGGAGACTCTAAGAGACACTGT  750

seq1  GAATGTCTTTGGTCCAGGTACATGGTAGGAGGCAGTCCTCAACAGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTTTGGTCCAGGTACATGGTAGGAGGCAGTCCTCAACAGGCATA  800

seq1  AAATATATA-TTTTTTTCCTATTGTT-AACAATTCCTTTTAAAAGTCTCT  848
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AAATATATATTTTTTTTCCTATTGTTAAACAATTCCTTTTAAAAGTCTCT  850

seq1  TACTAGAATTCACAT-GGTTGGTTGTTTCTTTCCTTT-GGAGACATTTTC  896
      ||||||||||||||| ||||||||||||||||||||| ||||||||||| 
seq2  TACTAGAATTCACATGGGTTGGTTGTTTCTTTCCTTTGGGAGACATTTT-  899

seq1  CCCTCAAAATTGTTCATGTTGTATTTGAACCTTTTCGTTCAATGCTTTTA  946
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CCCTCAAAATTGTTCATGTTGTATTTGAACC-TTTCGTTCAATGC-TTTA  947

seq1  ATTTTGCTA-TCAG-ATTGAATGT-AACATGTTTGAGAACTGACCTGTTT  993
      | ||||||| |||| ||||||||| ||||||||  |||||||||||||||
seq2  AATTTGCTATTCAGAATTGAATGTAAACATGTTGAAGAACTGACCTGTTT  997

seq1  TGTCTG-ATAACATCTCTGACAAAG-AGGGAAGC-TGTCATTTGTCAAAT  1040
      |||||| |||||||||||||||||| |||||||| ||||| |||||||||
seq2  TGTCTGAATAACATCTCTGACAAAGAAGGGAAGCTTGTCAATTGTCAAAT  1047

seq1  CAATGCATGGATGAGA-CTCCCAG-AGAGGAGGTAGTGAGA--TCCTCTG  1086
      ||||||||| |||||| ||||||| |||||| |||||||||  |||||||
seq2  CAATGCATGAATGAGACCTCCCAGAAGAGGA-GTAGTGAGAATTCCTCTG  1096

seq1  -CAATGGGTGGAAAGTTAATGTCCTGTTTTTGGTGACAGGATTCCAGTTC  1135
       |||||||| |||   ||| | |  || |||||||||| || ||||||||
seq2  CCAATGGGTTGAA--GTAAAGGCTGGTATTTGGTGACA-GAATCCAGTTC  1143

seq1  ATGA----------GGATCTGATA  1149
      ||||          | ||||||||
seq2  ATGAAGACCGAATTGAATCTGATA  1167


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