BAC Information

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BAC

Clone NameB6Ng01-217A01
Chromosome3 (Build37)
Map Location 130,755,062 - 130,756,166
singlet/doubletsinglet
Overlap genenone
Upstream geneSec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A01.bB6Ng01-217A01.g
ACCGA033539GA033540
length1,1101,002
definitionB6Ng01-217A01.b B6Ng01-217A01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagttaggcagctaagctcactcgtgtgtttcagcaggagtgt
ttttggctaggaaccttgattctgttactgacacacctctcatagctctt
tcctggcaaacaaagtacgaggccaagggtagaatgccgccatcccataa
ttaaggatataatacatctcatcctttgtccaacactgagtatttatgca
gtgccattcacacaccaaagggaattctagttaccactgtagaaatttcc
cacaattatttgttccaaagcaaatacatttcctttgattttgacaaaac
cctacaacacagaagtatattgcaaggctctgattaaccatgtgtttacc
aataccctggaggccttcactctttcaaacacacttgattacatcatgcc
gtttcatctctcatcacttggcacgcacgcatgttatatctgacaaacat
cagcaggaaaagcaatgagtgagatcatgagtcagggttctgttttatag
tccagtggtgaaggataatcgtgacttagcgtaagtgagacttcatgcct
ggattcaatgtttcaaagcatagaaggaaatgttgactgagcctaggtcc
ctgaggtagcccgaacagaacacagagcattcatagaattcccatcgtat
atgacagaccacacagaagaccaccattcctgaatgtactgagtgtttgt
attggccataaataacagtaacttaactttcgccgaattttactttctct
tgaaaccaaaacgtctctcagatatttgagtataactctgcctcgaagaa
gttattcttaacttcaaagggagcacatttgttttcttagatgacaacct
ttctagtcccctacacttaattaaattatgggttggggtgacattataaa
atagaaatattttgctcactgttcttacttttcctgcttgctgtgataag
atttcctgataaagtaacaacaaggaagggttctgctagctcagactgag
ggtcgtttgtcttgctcaggctgagtaattcatcatgtggggaaatcaga
tggcgtaacctcgaagtccctgggcacattgccatctgcagcagaagaga
agagatggtt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatcccaaacgctgacaccattgcatacactagcaagatttattgaag
gactcatatgtagctgtctcttgtgagactatgccggggccagcaaacac
agaagtggatgctcacagtcagcttatggatggatcataaggcttcctat
ggaagaacttaaataagtagccaaggatctaaagggaatctgccaacctt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130755062_130756166
seq2: B6Ng01-217A01.b_46_1155

seq1  GAATTCAGAGTTAGGCAGCTAAGCTCACTCGTGTGTTTCAGCAGGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTAGGCAGCTAAGCTCACTCGTGTGTTTCAGCAGGAGTGT  50

seq1  TTTTGGCTAGGAACCTTGATTCTGTTACTGACACACCTCTCATAGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTAGGAACCTTGATTCTGTTACTGACACACCTCTCATAGCTCTT  100

seq1  TCCTGGCAAACAAAGTACGAGGCCAAGGGTAGAATGCCGCCATCCCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAAACAAAGTACGAGGCCAAGGGTAGAATGCCGCCATCCCATAA  150

seq1  TTAAGGATATAATACATCTCATCCTTTGTCCAACACTGAGTATTTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATATAATACATCTCATCCTTTGTCCAACACTGAGTATTTATGCA  200

seq1  GTGCCATTCACACACCAAAGGGAATTCTAGTTACCACTGTAGAAATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTCACACACCAAAGGGAATTCTAGTTACCACTGTAGAAATTTCC  250

seq1  CACAATTATTTGTTCCAAAGCAAATACATTTCCTTTGATTTTGACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTATTTGTTCCAAAGCAAATACATTTCCTTTGATTTTGACAAAAC  300

seq1  CCTACAACACAGAAGTATATTGCAAGGCTCTGATTAACCATGTGTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACACAGAAGTATATTGCAAGGCTCTGATTAACCATGTGTTTACC  350

seq1  AATACCCTGGAGGCCTTCACTCTTTCAAACACACTTGATTACATCATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTGGAGGCCTTCACTCTTTCAAACACACTTGATTACATCATGCC  400

seq1  GTTTCATCTCTCATCACTTGGCACGCACGCATGTTATATCTGACAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTCTCATCACTTGGCACGCACGCATGTTATATCTGACAAACAT  450

seq1  CAGCAGGAAAAGCAATGAGTGAGATCATGAGTCAGGGTTCTGTTTTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAAAAGCAATGAGTGAGATCATGAGTCAGGGTTCTGTTTTATAG  500

seq1  TCCAGTGGTGAAGGATAATCGTGACTTAGCGTAAGTGAGACTTCATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGTGAAGGATAATCGTGACTTAGCGTAAGTGAGACTTCATGCCT  550

seq1  GGATTCAATGTTTCAAAGCATAGAAGGAAATGTTGACTGAGCCTAGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAATGTTTCAAAGCATAGAAGGAAATGTTGACTGAGCCTAGGTCC  600

seq1  CTGAGGTAGCCCGAACAGAACACAGAGCATTCATAGAATTCCCATCGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAGCCCGAACAGAACACAGAGCATTCATAGAATTCCCATCGTAT  650

seq1  ATGACAGACCACACAGAAGACCACCATTCCTGAATGTACTGAGTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGACCACACAGAAGACCACCATTCCTGAATGTACTGAGTGTTTGT  700

seq1  ATTGGCCAT-AATAACAGTAACTTAACTTTCGCCGAATTTTACTTTCTCT  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCATAAATAACAGTAACTTAACTTTCGCCGAATTTTACTTTCTCT  750

seq1  TGAAACCAAAACGTCTCTCAGATATTTGAGTATAACTCTGCCTCGAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAAAACGTCTCTCAGATATTTGAGTATAACTCTGCCTCGAAGAA  800

seq1  GTTATTCTTAACTTCAAA-GGAGCACATTTGTTTTCTTAGATGACAACC-  847
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GTTATTCTTAACTTCAAAGGGAGCACATTTGTTTTCTTAGATGACAACCT  850

seq1  TTCTAGTCCCCTACACTTAATTAAATTATGGGTT-GGGTGACATTATAAA  896
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTAGTCCCCTACACTTAATTAAATTATGGGTTGGGGTGACATTATAAA  900

seq1  ATAGAAATA-TTTGCTCACTG-TCTTACTTTTCCTGC-TGCTGTGATAAG  943
      ||||||||| ||||||||||| ||||||||||||||| ||||||||||||
seq2  ATAGAAATATTTTGCTCACTGTTCTTACTTTTCCTGCTTGCTGTGATAAG  950

seq1  ATTTCCTGATAAAAGTAAC-ACAAGGAAGGGTTCTGCTAGCTCAGACTGA  992
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  ATTTCCTGAT-AAAGTAACAACAAGGAAGGGTTCTGCTAGCTCAGACTGA  999

seq1  GGGTCGTTTGTC-TGCTCAGGCTGAGTAATTCATCATGGTGGGGAAATCA  1041
      |||||||||||| |||||||||||||||||||||||| ||||||||||| 
seq2  GGGTCGTTTGTCTTGCTCAGGCTGAGTAATTCATCAT-GTGGGGAAATC-  1047

seq1  AGATGGCGGAACCTCGAAGTCCCTGGGCACATTG-CATCTGCAGTCAAGA  1090
      |||||||| ||||||||||||||||||||||||| |||||||||   |||
seq2  AGATGGCGTAACCTCGAAGTCCCTGGGCACATTGCCATCTGCAG--CAGA  1095

seq1  AGAAGAGAGATGGTT  1105
      |||  ||||||||||
seq2  AGAGAAGAGATGGTT  1110