BAC Information

Click to search

BAC

Clone NameB6Ng01-217G01
Chromosome3 (Build37)
Map Location 25,868,003 - 25,999,423
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G01.bB6Ng01-217G01.g
ACCGA033804GA033805
length1,129842
definitionB6Ng01-217G01.b B6Ng01-217G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,998,292 - 25,999,423)(25,868,003 - 25,868,833)
sequence
gaattcctcctcacttcaagcatgactttattgtgctttccttggtagag
gttgttttctgttcctatatgaaggcatgaaaatgtcatttgccattaac
cttagggtgagatcacttagctgggagaggaagagtggccaaaagagcct
tgttttattctttgttactgacattttcctgcttctaatgcatgtaaaat
gactccaacttataccatttaaccatgaccattaaatatttgaagtatgc
aaggccatgccattggccttgtaaccgaataaatatgaagattttcttgt
aaatttgcataggaatgtgagttagaggatgctacacactagtaattatg
tgtgtttgtgtgtgcgcgtgtgtgtaatacaaagctgctagctactgcaa
aactgagaagatattagagatgcttcaaggtagatttttagctcttttat
aaagtaaacttttgtggtctgtcgtcacttttaaattttatgcaaagaag
ctgaatatagtattttaattgcttatctcaatgagaccaatgaactttct
atgctttacagatgcccataaaatgtacacataattttaagagattaatt
aattgtaatacttttcagtttacttacaatgaggaaacagcatacctgac
tttaaccacaatatgacaggaaacccccaagttatagaatatactgttga
tttctttattgtcaaagacttacagacaagaggatctcattttcttgtta
atgccccttgttcccaaactgaaattaatctgacactaattaggccattt
aattcctgtaatttagacttttaagaatggcaaaaccatctacagcagtt
atctttaaattaacagttttgaagttaaaatgatgtatttggagacttta
gtaattattaaatggaaataattatttagttttaagaaaatatctttaat
aaaatgttataaataactagcaaatcatggattagctaatttgttatttt
tgcacctctagaaaggaggcttaaaggaaatcatatattcaacctctcct
gtaaaaatttcctttgaatcttatttcataatatgccactttatatccag
ccttctgatagcttcttaatatgcttttt

tccgcggaattcttattttgctataacaatgttttttcatatatttctat
attcttaatgctttttaatttttatttcttgataattgataattatcaga
tttttgtctgacattataataatccttgaacatgttatgtatgtctttat
taattttaattaaattacattaattcatcattgagtttcagtatgaattt
tttttctagatgtaggcatgtaattttgtcattacaaaaattacactcaa
cttttattacactcaactcagattggaaatgaaccttttccccaataagc
attgtcttctaataataacaaagttattatacattgatacattacacatt
ttatatacattgctcctattaagtcataattttaggccttcttggcacac
aaacacatgaatatgcataactgagttaatgatattattactgatgacac
attgcactctaaacatagttttaaacttgtatattgttctttttaaagta
attttttagttcctagtattttttagtttctccactaggttaataatcta
tgacttggccttttctttagtttggcaatgtatgtatttgaaaagaaaaa
aaaaggtcatgagttcatatttgtttataaacaatgcaattttaaaagtt
tacactttggtttctttaatcattttaacattttctatatcactaaaatt
cattgttgtagaatgctatcgctttttcaaatgtgcacagttatattctt
tgtcaaacaacaggttgctatgggaaacttgggtttacatgtagggcctc
aatgctatcgcactggataaacttattttgaaagtcatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25998292_25999423
seq2: B6Ng01-217G01.b_45_1173 (reverse)

seq1  AAAAAGCAATATTAAAGAAGCTATCAAGAAGCTGGATATAAGGT-GCATA  49
      ||||||| ||||| ||||||||||||  | ||||||||||| || |||| 
seq2  AAAAAGC-ATATT-AAGAAGCTATCAGAAGGCTGGATATAAAGTGGCAT-  47

seq1  ATTATGAAAATAGGATTCAAAGGAAATTTTTAACAGAGAGTTTG-ATATA  98
      |||||| ||||| |||||||||||||||||||   ||||| ||| |||||
seq2  ATTATG-AAATAAGATTCAAAGGAAATTTTTACAGGAGAGGTTGAATATA  96

seq1  TGATTTCCTTTAAGCCTCCTTTCTAGAGGTTGCAAAATAACAAA-TAGCT  147
      ||||||||||||||||||||||||||||||   ||||||||||| |||||
seq2  TGATTTCCTTTAAGCCTCCTTTCTAGAGGTGCAAAAATAACAAATTAGCT  146

seq1  -ATTCATGATTTGCTAGTTATTTTATAACATTTTATTAAAGATATTTTCT  196
       || |||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATCCATGATTTGCTAGTTA-TTTATAACATTTTATTAAAGATATTTTCT  195

seq1  TAAAAACTAAATAATTATTTTCCATTTAATAATTACTAAAGTCTCCAAAT  246
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  T-AAAACTAAATAATTA-TTTCCATTTAATAATTACTAAAGTCTCCAAAT  243

seq1  ACATCATTTTAACTTCAAAACTGTTAATTTAAAGATAACTGCTGTAGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTTTAACTTCAAAACTGTTAATTTAAAGATAACTGCTGTAGATG  293

seq1  GTTTTGCCATTCTTAAAAGTCTAAATTACAGGAATTAAATGGCCTAATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCATTCTTAAAAGTCTAAATTACAGGAATTAAATGGCCTAATTA  343

seq1  GTGTCAGATTAATTTCAGTTTGGGAACAAGGGGCATTAACAAGAAAATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGATTAATTTCAGTTTGGGAACAAGGGGCATTAACAAGAAAATGA  393

seq1  GATCCTCTTGTCTGTAAGTCTTTGACAATAAAGAAATCAACAGTATATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTTGTCTGTAAGTCTTTGACAATAAAGAAATCAACAGTATATTC  443

seq1  TATAACTTGGGGGTTTCCTGTCATATTGTGGTTAAAGTCAGGTATGCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTGGGGGTTTCCTGTCATATTGTGGTTAAAGTCAGGTATGCTGT  493

seq1  TTCCTCATTGTAAGTAAACTGAAAAGTATTACAATTAATTAATCTCTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTGTAAGTAAACTGAAAAGTATTACAATTAATTAATCTCTTAA  543

seq1  AATTATGTGTACATTTTATGGGCATCTGTAAAGCATAGAAAGTTCATTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGTACATTTTATGGGCATCTGTAAAGCATAGAAAGTTCATTGG  593

seq1  TCTCATTGAGATAAGCAATTAAAATACTATATTCAGCTTCTTTGCATAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGAGATAAGCAATTAAAATACTATATTCAGCTTCTTTGCATAAA  643

seq1  ATTTAAAAGTGACGACAGACCACAAAAGTTTACTTTATAAAAGAGCTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGTGACGACAGACCACAAAAGTTTACTTTATAAAAGAGCTAAA  693

seq1  AATCTACCTTGAAGCATCTCTAATATCTTCTCAGTTTTGCAGTAGCTAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCTTGAAGCATCTCTAATATCTTCTCAGTTTTGCAGTAGCTAGC  743

seq1  AGCTTTGTATTACACACACGCGCACACACAAACACACATAATTACTAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTATTACACACACGCGCACACACAAACACACATAATTACTAGTG  793

seq1  TGTAGCATCCTCTAACTCACATTCCTATGCAAATTTACAAGAAAATCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATCCTCTAACTCACATTCCTATGCAAATTTACAAGAAAATCTTC  843

seq1  ATATTTATTCGGTTACAAGGCCAATGGCATGGCCTTGCATACTTCAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTCGGTTACAAGGCCAATGGCATGGCCTTGCATACTTCAAATA  893

seq1  TTTAATGGTCATGGTTAAATGGTATAAGTTGGAGTCATTTTACATGCATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGTCATGGTTAAATGGTATAAGTTGGAGTCATTTTACATGCATT  943

seq1  AGAAGCAGGAAAATGTCAGTAACAAAGAATAAAACAAGGCTCTTTTGGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGAAAATGTCAGTAACAAAGAATAAAACAAGGCTCTTTTGGCC  993

seq1  ACTCTTCCTCTCCCAGCTAAGTGATCTCACCCTAAGGTTAATGGCAAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTCTCCCAGCTAAGTGATCTCACCCTAAGGTTAATGGCAAATG  1043

seq1  ACATTTTCATGCCTTCATATAGGAACAGAAAACAACCTCTACCAAGGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCATGCCTTCATATAGGAACAGAAAACAACCTCTACCAAGGAAA  1093

seq1  GCACAATAAAGTCATGCTTGAAGTGAGGAGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  GCACAATAAAGTCATGCTTGAAGTGAGGAGGAATTC  1129


seq1: chr3_25868003_25868833
seq2: B6Ng01-217G01.g_66_901

seq1  GAATTCTTATTTTGCTATAACAATGTTTTTTCATATATTTCTATATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTGCTATAACAATGTTTTTTCATATATTTCTATATTCTT  50

seq1  AATGCTTTTTAATTTTTATTTCTTGATAATTGATAATTATCAGATTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTTAATTTTTATTTCTTGATAATTGATAATTATCAGATTTTTG  100

seq1  TCTGACATTATAATAATCCTTGAACATGTTATGTATGTCTTTATTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTATAATAATCCTTGAACATGTTATGTATGTCTTTATTAATTT  150

seq1  TAATTAAATTACATTAATTCATCATTGAGTTTCAGTATGAATTTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTACATTAATTCATCATTGAGTTTCAGTATGAATTTTTTTTC  200

seq1  TAGATGTAGGCATGTAATTTTGTCATTACAAAAATTACACTCAACTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTAGGCATGTAATTTTGTCATTACAAAAATTACACTCAACTTTTA  250

seq1  TTACACTCAACTCAGATTGGAAATGAACCTTTTCCCCAATAAGCATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCAACTCAGATTGGAAATGAACCTTTTCCCCAATAAGCATTGTC  300

seq1  TTCTAATAATAACAAAGTTATTATACATTGATACATTACACATTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAATAACAAAGTTATTATACATTGATACATTACACATTTTATAT  350

seq1  ACATTGCTCCTATTAAGTCATAATTTTAGGCCTTCTTGGCACACAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTCCTATTAAGTCATAATTTTAGGCCTTCTTGGCACACAAACAC  400

seq1  ATGAATATGCATAACTGAGTTAATGATATTATTACTGATGACACATTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGCATAACTGAGTTAATGATATTATTACTGATGACACATTGCA  450

seq1  CTCTAAACATAGTTTTAAACTTGTATATTGTTCTTTTTAAAGTAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACATAGTTTTAAACTTGTATATTGTTCTTTTTAAAGTAATTTTT  500

seq1  TAGTTCCTAGTATTTTTTAGTTTCTCCACTAGGTTAATAATCTATGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTAGTATTTTTTAGTTTCTCCACTAGGTTAATAATCTATGACTT  550

seq1  GGCCTTTTCTTTAGTTTGGCAATGTATGTATTTGAAAAGAAAAAAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTCTTTAGTTTGGCAATGTATGTATTTGAAAAGAAAAAAAAAGG  600

seq1  TCATGAGTTCATATTTGTTTATAAACAATGCAATTTTAAAAGTTTACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTTCATATTTGTTTATAAACAATGCAATTTTAAAAGTTTACACT  650

seq1  TTGGTTTCTTTAATCATTTTAACATTTTCTATATCACTAAAATTCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTTTAATCATTTTAACATTTTCTATATCACTAAAATTCATTGT  700

seq1  TGTAGAATGCTATCGCTTTTTC-AATGTGCACAGTTATATTCTTTGTCAA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTAGAATGCTATCGCTTTTTCAAATGTGCACAGTTATATTCTTTGTCAA  750

seq1  ACAACAGGTTGCTATGGG-AACTTGGGTTTACATGTAGGGCCTCAATGCT  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAACAGGTTGCTATGGGAAACTTGGGTTTACATGTAGGGCCTCAATGCT  800

seq1  ATTGCACT-GAT-AACTTAGTTTG-AAGTCATGTCA  831
      || ||||| ||| |||||| |||| |||||||||||
seq2  ATCGCACTGGATAAACTTATTTTGAAAGTCATGTCA  836


| Home | SequenceCutter | Blast | Download |