BAC Information

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BAC

Clone NameB6Ng01-217I05
Chromosome3 (Build37)
Map Location 81,094,290 - 81,095,428
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217I05.bB6Ng01-217I05.g
ACCGA033901GA033902
length4171,147
definitionB6Ng01-217I05.b B6Ng01-217I05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cagggaagaaagctagtgcaggtagggaggggaggtagctttaactgctg
cagttggctccacctctgcctctgttatgcctttcaggttacactgcagc
tgagatgcactgagccagttcaggctgagctgactagccagtgtggtgga
gcagtgctttggaagagcagatctcttcccaagtgttacagctctttgga
cagagggctcaggcgaaggagtagttctcacacccctctcatccttcctg
ataggatttttatatacagttttggggtgggtaagggtctgacaacaggt
acttctcattggtttggtctgagagctttggggaaaccttatttgcatgt
gggagggcttggtgctgctcctaagtgactgatggccacataccactctg
tgaggtggggggtgggg
gaattcaaaggagggtaattcatctgccaggtcctgctcatccttgtctg
caaagagaaccacatcttctccctccaatctagggaaatctatctcatca
tggtttcagtctaaattgtttcatgcaagctcatgttttcagggtagagt
cctcagcttgtgaggtgagaccaagctagatgaagtagatcactggagat
gtttctttagtggtgtcttgtttgcagcactcctgtttctaagtgcagag
caacctctgcaagagatatgcattatatttcttcaccatgctgccctctc
agcaacaggagtggcccactgtttccagatatgtcatgcacatttaccca
gtagtgtaaaagaagacatgcccctgaaatgacatgctcccactaacatg
atgatctgcccaaggacctggatctaagtgatgcccatactgacctctga
aatattgaaccaaaatgaactgcattgtgtttcatggcaggagtttaagc
cacagcagcaaatccatagaggacagcagagggagatgatgcggttctcc
aaggtgtgtggaggtttttgcaattattcctttcccatatgtatagcaga
gagcacttccactgaagcccaccactcttggatctgtaaaagtctggacc
atgacaaggaataatagaactaaatagtaattccccaccccaaatttgcc
ataatgtatggaagagtatttaaaaagtaataaaattaaacatatttgtg
aaaaatatgagaatacagtgaattttgaaagatcaaaagattcttttgct
tacttctcattaaaattacacctttccaggtatagcggctcatgtccgtg
gtccatgtaattgggtgatagatgtaatcgatctcagagttcaaggtagc
ctgattgagatagcaagcaccaggcttgccggggcctgtatagtgaaacc
acattaataaataagttaccttaaaaaaaaatccatccacattccttgtt
cagcaccatgttcccacttgacttactttatggtgtttgtaatttattaa
aaaccaaattttaccagtatagaagtgattagtggtccaatctgtgttca
gacacttagggatatgcctacacttcatgtttctacaccatacctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81094290_81095428
seq2: B6Ng01-217I05.g_67_1213

seq1  GAATTCAAAGGAGGGTAATTCATCTGCCAGGTCCTGCTCATCCTTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAGGGTAATTCATCTGCCAGGTCCTGCTCATCCTTGTCTG  50

seq1  CAAAGAGAACCACATCTTCTCCCTCCAATCTAGGGAAATCTATCTCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAACCACATCTTCTCCCTCCAATCTAGGGAAATCTATCTCATCA  100

seq1  TGGTTTCAGTCTAAATTGTTTCATGCAAGCTCATGTTTTCAGGGTAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAGTCTAAATTGTTTCATGCAAGCTCATGTTTTCAGGGTAGAGT  150

seq1  CCTCAGCTTGTGAGGTGAGACCAAGCTAGATGAAGTAGATCACTGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTGTGAGGTGAGACCAAGCTAGATGAAGTAGATCACTGGAGAT  200

seq1  GTTTCTTTAGTGGTGTCTTGTTTGCAGCACTCCTGTTTCTAAGTGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTAGTGGTGTCTTGTTTGCAGCACTCCTGTTTCTAAGTGCAGAG  250

seq1  CAACCTCTGCAAGAGATATGCATTATATTTCTTCACCATGCTGCCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTGCAAGAGATATGCATTATATTTCTTCACCATGCTGCCCTCTC  300

seq1  AGCAACAGGAGTGGCCCACTGTTTCCAGATATGTCATGCACATTTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGAGTGGCCCACTGTTTCCAGATATGTCATGCACATTTACCCA  350

seq1  GTAGTGTAAAAGAAGACATGCCCCTGAAATGACATGCTCCCACTAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTAAAAGAAGACATGCCCCTGAAATGACATGCTCCCACTAACATG  400

seq1  ATGATCTGCCCAAGGACCTGGATCTAAGTGATGCCCATACTGACCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGCCCAAGGACCTGGATCTAAGTGATGCCCATACTGACCTCTGA  450

seq1  AATATTGAACCAAAATGAACTGCATTGTGTTTCATGGCAGGAGTTTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAACCAAAATGAACTGCATTGTGTTTCATGGCAGGAGTTTAAGC  500

seq1  CACAGCAGCAAATCCATAGAGGACAGCAGAGGGAGATGATGCGGTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCAAATCCATAGAGGACAGCAGAGGGAGATGATGCGGTTCTCC  550

seq1  AAGGTGTGTGGAGGTTTTTGCAATTATTCCTTTCCCATATGTATAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGTGGAGGTTTTTGCAATTATTCCTTTCCCATATGTATAGCAGA  600

seq1  GAGCACTTCCACTGAAGCCCACCACTCTTGGATCTGTAAAAGTCTGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTCCACTGAAGCCCACCACTCTTGGATCTGTAAAAGTCTGGACC  650

seq1  ATGACAAGGAATAATAGAACTAAATAGTAATTCCCCACCCCAAATTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGGAATAATAGAACTAAATAGTAATTCCCCACCCCAAATTTGCC  700

seq1  ATAATGTATGGAAGAGTATTTAAAAAGTAATAAAATTAAACATATTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATGGAAGAGTATTTAAAAAGTAATAAAATTAAACATATTTGTG  750

seq1  AAAAATATGAGAATACAGTGAATTTTGAAAGATCAAAAGATTCTTTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGAGAATACAGTGAATTTTGAAAGATCAAAAGATTCTTTTGCT  800

seq1  TACTTCTCATTAAAATTACACCTTTCCAGGTATAGCGGCTCATGTCCGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCATTAAAATTACACCTTTCCAGGTATAGCGGCTCATGTCCGTG  850

seq1  GTCCATGTAATTGGGTGATAGATGTAATCGATCTCAGAGTTCAAGGTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTAATTGGGTGATAGATGTAATCGATCTCAGAGTTCAAGGTAGC  900

seq1  CTGATTGAGATAGCAAGCACCAGGCTTGCCGGGG-CTGTATAGTGAAACC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGATTGAGATAGCAAGCACCAGGCTTGCCGGGGCCTGTATAGTGAAACC  950

seq1  ACA-TAATAAATAAGTTACCTTAAAAAAAAATCCAT-CACATTCCTTGTT  997
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATTAATAAATAAGTTACCTTAAAAAAAAATCCATCCACATTCCTTGTT  1000

seq1  CAGCACCATG-TCACAC-TGACTTAC-TTATTGTGTTTGTAA-TTATTAA  1043
      |||||||||| || ||| |||||||| |||| |||||||||| |||||||
seq2  CAGCACCATGTTCCCACTTGACTTACTTTATGGTGTTTGTAATTTATTAA  1050

seq1  AAAC--AAATTTACCAGTAATAAGAGTTGAATTAGTGTCCCAAACTTGTG  1091
      ||||  || ||||||||| |||  |||   |||||||  |||| | ||||
seq2  AAACCAAATTTTACCAGT-ATAGAAGT--GATTAGTGGTCCAATC-TGTG  1096

seq1  -TCAGAACAC-TAGGAATATGC--TCACTGCATGTTTCTACA-CATACAC  1136
       |||| |||| |||| ||||||   |||| |||||||||||| ||||| |
seq2  TTCAG-ACACTTAGGGATATGCCTACACTTCATGTTTCTACACCATAC-C  1144

seq1  TAC  1139
      |||
seq2  TAC  1147