BAC Information

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BAC

Clone NameB6Ng01-217L08
Chromosome3 (Build37)
Map Location 70,379,568 - 70,552,412
singlet/doubletdoublet
Overlap genenone
Upstream geneB3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217L08.bB6Ng01-217L08.g
ACCGA034036GA034037
length1,148851
definitionB6Ng01-217L08.b B6Ng01-217L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,551,264 - 70,552,412)(70,379,568 - 70,380,415)
sequence
gaattcattcacaaacactctctaaaatgtacaacaaaattattgacaaa
taagtccaaattataaataaatagataaacaagaatattacagaataaca
ttgaaggtatgttcaaattaatctgtgatcataataaaataattaaacaa
aagaaattgtatctgtataccagacagcctccatgattcagtgtgggcag
caatttatgtactccctttgcagtagttgaggggagacatggctcttcag
taagtcaatctggaagattatattgctatcaccctcagatttaaggggtg
caatgtgaaagttcctgtaaatactaacctgaattatcatggaagataga
caattaatattttttccaggagatgtagacataggatgaagtacatcaag
acactaattttatacctcaaaacatactgtttaacaatattgctcataaa
catgggtacaaagatataagttttaaaagattgtcaatattgtttcttat
aataatagcagaaaatattaggacattgaaatatagcctatctctcaact
acactagagctatgtacttaatgttgtttaaacaattatcatatgtattt
attttaaagatttattcgtcttctgtgtgtatgatgtttttgcctgtgta
caaagtgagtacagtgccctcgaaggtcttaagaaggcagtggattccct
agaacagaggttactgatgttagctaagtgctgagacatgaacccagctc
ttttgcaggagaaacaagagctttgaacccactgagccacctctctatcc
agcacgtttttcttaatgagtggtctttatcctcatggtttatagttttt
tacttgttttagggggaaaatcaagaaccaattatgttctctgagtttat
gcatattgcaaagtatgtctgtgtgaaaatgtttttaaaagttgtactac
tgctttctcagattaactgttagagggggtttcttttctttctcataaat
gtaattttgtccaacaaattccttaagattatgatatttgagaaagattg
acaggattgcatctggttgacttaagatgagtcagcttggtggccgcgct
cactggccaggaagaacggacgcttgctacagggatccttccgcacac

gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaataactttgtacatgaatttttgg
ttaaaaaaaacactggagaagaatgaataaatgttatgggtaaatgtatg
gagtatttgtgaaccaacttatacagttatattccaacaattttgcatgt
aatcaaagtagagatcatcttcatttggcactgtatcttttactgaaatc
aagaaacagggttttaattccctcaagccccatgtcagtgtagatgagtg
gcaaaattacaaaaatcacctttagattcctaagtcacaggctaaaactt
gatgcagatctaagaacactgatcatattccaaacagtgaaatgttgagt
actcagccacacatggggttggcacctgggttcatggaaagctcattgtg
tttctctcacaatctcttgacacaaagatgcaattttgatcgaaattgca
ttgactatgtagattgctaatgtcctaggtatttattcatatgtaagaag
tctcaaggttgttatttcagggaacttgggtatgggtataaaagcccaga
gtttcagtttagaatagtgtctctcctgggaattttgtggtcggtattgc
ctctaggatcctgggtgctaacttttgccctcagtagtcttctagtttaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_70551264_70552412
seq2: B6Ng01-217L08.b_46_1193 (reverse)

seq1  GTGTGCAGAAGGAT-CCTGTAGC-AGCGT-CGTTCTTCCTGGCCAGTTGA  47
      |||||| ||||||| |||||||| ||||| |||||||||||||||| |||
seq2  GTGTGCGGAAGGATCCCTGTAGCAAGCGTCCGTTCTTCCTGGCCAG-TGA  49

seq1  GCGCGCGCAACAAGCTGACTCACTCTT-AGTCAAACCAGATGCAAATCCT  96
      |||||  || |||||||||||| |||| |||| |||||||||| ||||||
seq2  GCGCGGCCACCAAGCTGACTCA-TCTTAAGTC-AACCAGATGC-AATCCT  96

seq1  GTCAATCTTTCTCAAATATTCATAATCTTAAGGGAATTTGTTGGACAAAA  146
      |||||||||||||||||| |||||||||||| |||||||||||||| |||
seq2  GTCAATCTTTCTCAAATA-TCATAATCTTAA-GGAATTTGTTGGAC-AAA  143

seq1  ATTACA-TTATGAGAAAGAAAAGAAACCCCCTCTAACAGTTAATCTGGAG  195
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTACATTTATGAGAAAGAAAAGAAACCCCCTCTAACAGTTAATCT-GAG  192

seq1  AAGGCAGTAGTACAACTTTT-AAAACATTTTCACACAGACATACTTTGCA  244
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGCAGTAGTACAACTTTTAAAAACATTTTCACACAGACATACTTTGCA  242

seq1  ATATGCATAAACTCAGAGAACAT-ATTGGTTCCTGATTTTCCCCCTAAAA  293
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ATATGCATAAACTCAGAGAACATAATTGGTTCTTGATTTTCCCCCTAAAA  292

seq1  CAAGTAAAAAACTATAAACCATGAGGATAAAGACCACTCATTAAGAAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAAAACTATAAACCATGAGGATAAAGACCACTCATTAAGAAAAA  342

seq1  CGTGCTGGATAGAGAGGTGGCTCAGTGGGTTCAAAGCTCTTGTTTCTCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGGATAGAGAGGTGGCTCAGTGGGTTCAAAGCTCTTGTTTCTCCT  392

seq1  GCAAAAGAGCTGGGTTCATGTCTCAGCACTTAGCTAACATCAGTAACCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGCTGGGTTCATGTCTCAGCACTTAGCTAACATCAGTAACCTC  442

seq1  TGTTCTAGGGAATCCACTGCCTTCTTAAGACCTTCGAGGGCACTGTACTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGGGAATCCACTGCCTTCTTAAGACCTTCGAGGGCACTGTACTC  492

seq1  ACTTTGTACACAGGCAAAAACATCATACACACAGAAGACGAATAAATCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTACACAGGCAAAAACATCATACACACAGAAGACGAATAAATCTT  542

seq1  TAAAATAAATACATATGATAATTGTTTAAACAACATTAAGTACATAGCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATACATATGATAATTGTTTAAACAACATTAAGTACATAGCTC  592

seq1  TAGTGTAGTTGAGAGATAGGCTATATTTCAATGTCCTAATATTTTCTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGTTGAGAGATAGGCTATATTTCAATGTCCTAATATTTTCTGCT  642

seq1  ATTATTATAAGAAACAATATTGACAATCTTTTAAAACTTATATCTTTGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAAGAAACAATATTGACAATCTTTTAAAACTTATATCTTTGTA  692

seq1  CCCATGTTTATGAGCAATATTGTTAAACAGTATGTTTTGAGGTATAAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTTATGAGCAATATTGTTAAACAGTATGTTTTGAGGTATAAAAT  742

seq1  TAGTGTCTTGATGTACTTCATCCTATGTCTACATCTCCTGGAAAAAATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTTGATGTACTTCATCCTATGTCTACATCTCCTGGAAAAAATAT  792

seq1  TAATTGTCTATCTTCCATGATAATTCAGGTTAGTATTTACAGGAACTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCTATCTTCCATGATAATTCAGGTTAGTATTTACAGGAACTTTC  842

seq1  ACATTGCACCCCTTAAATCTGAGGGTGATAGCAATATAATCTTCCAGATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCACCCCTTAAATCTGAGGGTGATAGCAATATAATCTTCCAGATT  892

seq1  GACTTACTGAAGAGCCATGTCTCCCCTCAACTACTGCAAAGGGAGTACAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTGAAGAGCCATGTCTCCCCTCAACTACTGCAAAGGGAGTACAT  942

seq1  AAATTGCTGCCCACACTGAATCATGGAGGCTGTCTGGTATACAGATACAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTGCCCACACTGAATCATGGAGGCTGTCTGGTATACAGATACAA  992

seq1  TTTCTTTTGTTTAATTATTTTATTATGATCACAGATTAATTTGAACATAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTTTAATTATTTTATTATGATCACAGATTAATTTGAACATAC  1042

seq1  CTTCAATGTTATTCTGTAATATTCTTGTTTATCTATTTATTTATAATTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTTATTCTGTAATATTCTTGTTTATCTATTTATTTATAATTTG  1092

seq1  GACTTATTTGTCAATAATTTTGTTGTACATTTTAGAGAGTGTTTGTGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTTGTCAATAATTTTGTTGTACATTTTAGAGAGTGTTTGTGAAT  1142

seq1  GAATTC  1149
      ||||||
seq2  GAATTC  1148


seq1: chr3_70379568_70380415
seq2: B6Ng01-217L08.g_67_917

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATAACTTTGTACATGAATTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATAACTTTGTACATGAATTTTTGG  250

seq1  TTAAAAAAAACACTGGAGAAGAATGAATAAATGTTATGGGTAAATGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAACACTGGAGAAGAATGAATAAATGTTATGGGTAAATGTATG  300

seq1  GAGTATTTGTGAACCAACTTATACAGTTATATTCCAACAATTTTGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTGTGAACCAACTTATACAGTTATATTCCAACAATTTTGCATGT  350

seq1  AATCAAAGTAGAGATCATCTTCATTTGGCACTGTATCTTTTACTGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTAGAGATCATCTTCATTTGGCACTGTATCTTTTACTGAAATC  400

seq1  AAGAAACAGGGTTTTAATTCCCTCAAGCCCCATGTCAGTGTAGATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGGGTTTTAATTCCCTCAAGCCCCATGTCAGTGTAGATGAGTG  450

seq1  GCAAAATTACAAAAATCACCTTTAGATTCCTAAGTCACAGGCTAAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTACAAAAATCACCTTTAGATTCCTAAGTCACAGGCTAAAACTT  500

seq1  GATGCAGATCTAAGAACACTGATCATATTCCAAACAGTGAAATGTTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATCTAAGAACACTGATCATATTCCAAACAGTGAAATGTTGAGT  550

seq1  ACTCAGCCACACATGGGGTTGGCACCTGGGTTCATGGAAAGCTCATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCACACATGGGGTTGGCACCTGGGTTCATGGAAAGCTCATTGTG  600

seq1  TTTCTCTCACAATCTCTTGACACAAAGATGCAATTTTGATCGAAATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCACAATCTCTTGACACAAAGATGCAATTTTGATCGAAATTGCA  650

seq1  TTGACTATGTAGATTGCTAATGTCCTAGGTATTTATTCATATGTAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATGTAGATTGCTAATGTCCTAGGTATTTATTCATATGTAAGAAG  700

seq1  TCTCAAGGTTGTTATTTCAGGGAACTTGGGTATGGGTATAAAAGCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGTTGTTATTTCAGGGAACTTGGGTATGGGTATAAAAGCCCAGA  750

seq1  GTTTCAGTTTAGAATAGTGTCTCTCCTGGGAATTTTGTGGTCGGTATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTTTAGAATAGTGTCTCTCCTGGGAATTTTGTGGTCGGTATTGC  800

seq1  CTCTAGGATCTTGGGTGCTAACTTT--GCCTCAGTAGTC-TCTAGTATAA  847
      |||||||||| ||||||||||||||   ||||||||||| |||||| |||
seq2  CTCTAGGATCCTGGGTGCTAACTTTTGCCCTCAGTAGTCTTCTAGTTTAA  850

seq1  G  848
      |
seq2  G  851


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