BAC Information

Click to search

BAC

Clone NameB6Ng01-218B01
Chromosome11 (Build37)3 (Build37)
Map Location 39,768,621 - 39,768,67133,150,757 - 33,151,743
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218B01.bB6Ng01-218B01.g
ACCGA034293GA034294
length6601,022
definitionB6Ng01-218B01.b B6Ng01-218B01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,768,621 - 39,768,671)(33,150,757 - 33,151,743)
sequence
gaattctttgtatatattggatattagcctctatcagatgtagggttggt
aaaaatcttttcccaatctgttagttgctgttttgtcctattgacagtgt
cctttgccttactttggaattttatgtggtccccattgtcagttcttgat
cttagagcataaattattggtgttctgttcagaaaatttccccatgtgcc
tatgtcctcgaagctcttctgcagtttcttttctattagttgcagtgtat
ctggttttatgtggaggtccttgatccatcccatatacagtcaccaaacc
cagttactattatggatgccaacagagtccccaatggaggaactagtgaa
aggacccaaggagctgaaggggtttgcagccccataggaggaacaacaat
atgaaccaaccagtacccccagagctcccagggactaaactaccaaccaa
aaagcatggttccagctgaatatgtagcagaggatggccttgttggttat
caatggaggaggagcccttggtcctgtgaaggctctatgccccactgtag
gggactgggtgcattaaggagcagggggaagggggaggcagtgggggttt
cagaggggaaaccaggaaagaggataatatttgaaatgtaaataaagaaa
atattctaat

gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgtaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgtccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaagggatacagaaaatgtggtacttttacacaatg
gagtattagactcttttttaacttaactactgtttagtagttgctgggca
gtggtggtgctcgcctttaattctggcacttgggaggcatcggcaggtgg
atttctgagttcgagtccagtctggtctacaaagtgagttccaggtcagc
cagggctatacagagaaaccctgtcttggaaaataacaaaaaacaaaaac
aaacaaacaaacaaacaaacaacaaaaaaggaagacctagggctgaccat
tttatattgaataaccagctaggggcacattcctgagagatcaattctct
cttagcagacattagttgtctgcaattctttgtctatgtgtagtgtccct
tgagacttctcttttctatgtagcacctctgttggtgttgtcatgatttc
agattctgtttaggcagccacattgttgtggtatcatgggtataatagct
tccctgtcatttttcagagacacaataatcagaagcaaagtttctggctc
tctggttcccttacaatcttctgctacctacttcacagtgctttcctgac
tcttagtgcaggagtttgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39768621_39768671
seq2: B6Ng01-218B01.b_398_448

seq1  CCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAA  50
      |||||||||||||||||| |||| ||| ||||| ||||||||||||||||
seq2  CCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAA  50

seq1  C  51
      |
seq2  C  51


seq1: chr3_33150757_33151743
seq2: B6Ng01-218B01.g_65_1054

seq1  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGTAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGTAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCA  250

seq1  GAAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG  300

seq1  CATATATCCAGAAGATGTCCAACCGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCCAGAAGATGTCCAACCGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400

seq1  GCCCCTCAACAGAGGAAGGGATACAGAAAATGTGGTACTTTTACACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCAACAGAGGAAGGGATACAGAAAATGTGGTACTTTTACACAATG  450

seq1  GAGTATTAGACTCTTTTTTAACTTAACTACTGTTTAGTAGTTGCTGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAGACTCTTTTTTAACTTAACTACTGTTTAGTAGTTGCTGGGCA  500

seq1  GTGGTGGTGCTCGCCTTTAATTCTGGCACTTGGGAGGCATCGGCAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCTCGCCTTTAATTCTGGCACTTGGGAGGCATCGGCAGGTGG  550

seq1  ATTTCTGAGTTCGAGTCCAGTCTGGTCTACAAAGTGAGTTCCAGGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGTCCAGTCTGGTCTACAAAGTGAGTTCCAGGTCAGC  600

seq1  CAGGGCTATACAGAGAAACCCTGTCTTGGAAAATAACAAAAAACAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTATACAGAGAAACCCTGTCTTGGAAAATAACAAAAAACAAAAAC  650

seq1  AAACAAACAAACAAACAAACAACAAAAAAGGAAGACCTAGGGCTGACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAACAAAAAAGGAAGACCTAGGGCTGACCAT  700

seq1  TTTATATTGAATAACCAGCTAGGGGCACATTCCTGAGAGATCAATTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGAATAACCAGCTAGGGGCACATTCCTGAGAGATCAATTCTCT  750

seq1  CTTAGCAGACATTAGTTGTCTGCAATTCTTTGTCTATGTGTAGTGTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGACATTAGTTGTCTGCAATTCTTTGTCTATGTGTAGTGTCCCT  800

seq1  TGAGACTTCTCTTTTCTATGTAGCACCTCTGTTGGTGTTGTCATGA-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGACTTCTCTTTTCTATGTAGCACCTCTGTTGGTGTTGTCATGATTTC  850

seq1  AGATTCTGTTTAGGCAGCCACATTGTTGTGGTATCATGGGTATAATAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGTTTAGGCAGCCACATTGTTGTGGTATCATGGGTATAATAGCT  900

seq1  TCCCTGTCATTTTTCAGAGACACAATAATCAG-AGCAAAGTTTCTGGCTC  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCTGTCATTTTTCAGAGACACAATAATCAGAAGCAAAGTTTCTGGCTC  950

seq1  TCTGGT--CCTTACAATCTTTCTGCTACCTACTTCACAGTG  987
      ||||||  |||||||||| ||||||||||||||||||||||
seq2  TCTGGTTCCCTTACAATC-TTCTGCTACCTACTTCACAGTG  990


| Home | SequenceCutter | Blast | Download |