BAC Information

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BAC

Clone NameB6Ng01-218D13
Chromosome3 (Build37)
Map Location 147,916,706 - 148,083,356
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218D13.bB6Ng01-218D13.g
ACCGA034407GA034408
length1,1841,147
definitionB6Ng01-218D13.b B6Ng01-218D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,082,150 - 148,083,356)(147,916,706 - 147,917,852)
sequence
gaattcatgattgtggagagttggaatgttgcaaatccagaatcaaacta
tttcaagctacttttaatccccctgaaggccattccgtagccaccctcat
gtctgatgtaacttccttttaatgcattgggaaagcattcacctttgagt
acaatggcaggtgcatatccacttgagtaaacaatcactttgggagtcac
agtgccagacaatgactgaccagtggcttctggatcctcagtcttctaaa
ttcaaagaatgaatttcacagatgatgggaggattaatttcagaaaggag
tctgattctaagtgagagtttaagacaaaggaagggaggccagtgccaat
ataagtagaaagacccaagaaaaggttgttagtggccaagggtcccatag
gggctaatagagctttactgggctgaggaatggagaggtggctgaggcgg
tcagtgtacctttctcaactgttaacgtctccagggacttctccatcctg
ggctccagacagtccttcttgtcacttcctcctttctatcttgctggcag
ctacactcattaaggtccctatgcaaaaaaccagaaggataagaagagca
aggaatgagaagagttaccaatgccccaaagcatctctgccacttctgtt
ctctggatgaagggacagaggctcaggcacagacagggcattttctgttt
ctgcccaagacagaaggagctgttaaggatcagaggtttgctttagagga
ccacaccctgagtctgactcatttctttcttttctctcaccacttgtgac
tatctaaacctttaaatgtgctagctttcaccaaaagctaggtttttaaa
cttattggagaaattgccctgctttcttcctaccaggagcctctaccaac
acatctggtaggtgcctcaatttgttagttggatttgcaactaaaagttc
tactcaaagcataccaacagtggaatgtaactttgggtgccacctaatcc
ttgtccctaggctggatacactcaactttactcagataaactattcttct
ttcctcagtgagagctgtgtttctgtgacaaaagaaaaaaataataaaag
actacttcaatgtctatgtcaaggatcgttccaccaatccttaattcata
tctatcctgatgcactaagagccatcaattttaa

gaattccaaatggaaaagaccttgcctgccagctcttccgcagacacata
tgtcatatttgttaaatggctaagggtttttgcagtgcctggtcaggagt
gagtgtgagaggcagctgaatgctgtgagatgtgttaagatggagccact
agcatataaaacacattcgtagctaattcaaaggctagggatgtatacgc
taagcaggtgagctctggccttctcgttctgtgctcctctatctcaccag
ctaaaccaggggttcctgtggctatactcattttcttcagcacctatact
ctgactaacgtcagctttgcattttctaaccccttgtagatgtgacctgg
accttcccatgcaacagtctgtgaaattggaccatctgtaatttttgttt
tttgagatcctttcatatattggttagatcattagaaatgttattatctg
ctttgttactttctagagtaactgaggacctttgtcctgattcttccaga
gaagtcacactagtttggagcagtctctgtgtaagacactcctccacatc
ttcctccctttctcttacataggagcagttgtcttatatgctgcaaagac
ttgaattgcctagaaagaaaatctatttcccgtagattttcttatcctgc
cacaggcttggataatggagaagtccaacgctgcaaaggggtctctttcc
aaagggcattgtttttattctcctggcacgttaggtgcaaagtgatggat
tccggtgcatttctctcagctctatggataaaccagcatttctgctttat
cttttgtattttcattcacacaaccttcatctccattctttttaaaagtg
actcagatctgttgatcgataccctcatcaagttgacttacccgtgtttc
tgttgaaactttaccgtttcatggagtaattacttatgttctgttacata
gcctaagaccctggggccagtctgaaattaagggctctagggatctcctc
actcctttagaggattgttagcataggaaaccagccttgactgaaatttc
agatttcagctttttaaagtagtattttcttgagcttctcattaaagact
tggcgtccttacttcatggacctttttcttcaatgcctgtgatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148082150_148083356
seq2: B6Ng01-218D13.b_47_1230 (reverse)

seq1  TTAAA--TGATGGCTCTTAGTGCATCAGTGATTAGATATGGAGAATAAAG  48
      |||||  ||||||||||||||||||||| || |||||||   |||| |||
seq2  TTAAAATTGATGGCTCTTAGTGCATCAG-GA-TAGATAT---GAATTAAG  45

seq1  AGAATTGGGTGGAAAGGAACCCTGGACATAGACATGGAGTTAGTTCTTTT  98
       ||  | ||||||| |  | ||| ||||||||||| ||   |||  | ||
seq2  -GA--TTGGTGGAACG--ATCCTTGACATAGACATTGA---AGTAGTCTT  87

seq1  TTATTATTTTTTTTTCTTTTTGTTCACAGAAAACACAGCTCTCACCTTGA  148
      ||||||  ||||||||||||   |||||| |||||||||||||||  || 
seq2  TTATTA--TTTTTTTCTTTT--GTCACAG-AAACACAGCTCTCAC--TG-  129

seq1  AGGAAAGAAG-ATAGTTTAATCCTGAGTAAAGTTTGAGTGTATCCAGCCT  197
      |||||||||| ||||||||   |||||||||| |||||||||||||||||
seq2  AGGAAAGAAGAATAGTTTA--TCTGAGTAAAG-TTGAGTGTATCCAGCCT  176

seq1  AGGGACAAGGATTTAGGTGGCACCCAAAGTTACATTCCACTGTTGGTATG  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAGGA-TTAGGTGGCACCCAAAGTTACATTCCACTGTTGGTATG  225

seq1  CTTTGAGTAGAACTTTTTAGTTGCAAATCCAACTAACAAATTGAGGCACC  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTAGAAC-TTTTAGTTGCAAATCCAACTAACAAATTGAGGCACC  274

seq1  TACCAGATGTGTTGGTAGAGGCTCCTGGTAGGAAGAAAGCAGGGCAATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATGTGTTGGTAGAGGCTCCTGGTAGGAAGAAAGCAGGGCAATTT  324

seq1  CTCCAATAAGTTTAAAAACCTAGCTTTTGGTGAAAGCTAGCACATTTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATAAGTTTAAAAACCTAGCTTTTGGTGAAAGCTAGCACATTTAAA  374

seq1  GGTTTAGATAGTCACAAGTGGTGAGAGAAAAGAAAGAAATGAGTCAGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATAGTCACAAGTGGTGAGAGAAAAGAAAGAAATGAGTCAGACT  424

seq1  CAGGGTGTGGTCCTCTAAAGCAAACCTCTGATCCTTAACAGCTCCTTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGGTCCTCTAAAGCAAACCTCTGATCCTTAACAGCTCCTTCTG  474

seq1  TCTTGGGCAGAAACAGAAAATGCCCTGTCTGTGCCTGAGCCTCTGTCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCAGAAACAGAAAATGCCCTGTCTGTGCCTGAGCCTCTGTCCCT  524

seq1  TCATCCAGAGAACAGAAGTGGCAGAGATGCTTTGGGGCATTGGTAACTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGAGAACAGAAGTGGCAGAGATGCTTTGGGGCATTGGTAACTCT  574

seq1  TCTCATTCCTTGCTCTTCTTATCCTTCTGGTTTTTTGCATAGGGACCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCCTTGCTCTTCTTATCCTTCTGGTTTTTTGCATAGGGACCTTA  624

seq1  ATGAGTGTAGCTGCCAGCAAGATAGAAAGGAGGAAGTGACAAGAAGGACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTAGCTGCCAGCAAGATAGAAAGGAGGAAGTGACAAGAAGGACT  674

seq1  GTCTGGAGCCCAGGATGGAGAAGTCCCTGGAGACGTTAACAGTTGAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCCCAGGATGGAGAAGTCCCTGGAGACGTTAACAGTTGAGAAA  724

seq1  GGTACACTGACCGCCTCAGCCACCTCTCCATTCCTCAGCCCAGTAAAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTGACCGCCTCAGCCACCTCTCCATTCCTCAGCCCAGTAAAGCT  774

seq1  CTATTAGCCCCTATGGGACCCTTGGCCACTAACAACCTTTTCTTGGGTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGCCCCTATGGGACCCTTGGCCACTAACAACCTTTTCTTGGGTCT  824

seq1  TTCTACTTATATTGGCACTGGCCTCCCTTCCTTTGTCTTAAACTCTCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTATATTGGCACTGGCCTCCCTTCCTTTGTCTTAAACTCTCACT  874

seq1  TAGAATCAGACTCCTTTCTGAAATTAATCCTCCCATCATCTGTGAAATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCAGACTCCTTTCTGAAATTAATCCTCCCATCATCTGTGAAATTC  924

seq1  ATTCTTTGAATTTAGAAGACTGAGGATCCAGAAGCCACTGGTCAGTCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGAATTTAGAAGACTGAGGATCCAGAAGCCACTGGTCAGTCATT  974

seq1  GTCTGGCACTGTGACTCCCAAAGTGATTGTTTACTCAAGTGGATATGCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCACTGTGACTCCCAAAGTGATTGTTTACTCAAGTGGATATGCAC  1024

seq1  CTGCCATTGTACTCAAAGGTGAATGCTTTCCCAATGCATTAAAAGGAAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTGTACTCAAAGGTGAATGCTTTCCCAATGCATTAAAAGGAAGT  1074

seq1  TACATCAGACATGAGGGTGGCTACGGAATGGCCTTCAGGGGGATTAAAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGACATGAGGGTGGCTACGGAATGGCCTTCAGGGGGATTAAAAG  1124

seq1  TAGCTTGAAATAGTTTGATTCTGGATTTGCAACATTCCAACTCTCCACAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGAAATAGTTTGATTCTGGATTTGCAACATTCCAACTCTCCACAA  1174

seq1  TCATGAATTC  1207
      ||||||||||
seq2  TCATGAATTC  1184


seq1: chr3_147916706_147917852
seq2: B6Ng01-218D13.g_65_1211

seq1  GAATTCCAAATGGAAAAGACCTTGCCTGCCAGCTCTTCCGCAGACACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGGAAAAGACCTTGCCTGCCAGCTCTTCCGCAGACACATA  50

seq1  TGTCATATTTGTTAAATGGCTAAGGGTTTTTGCAGTGCCTGGTCAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATTTGTTAAATGGCTAAGGGTTTTTGCAGTGCCTGGTCAGGAGT  100

seq1  GAGTGTGAGAGGCAGCTGAATGCTGTGAGATGTGTTAAGATGGAGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAGAGGCAGCTGAATGCTGTGAGATGTGTTAAGATGGAGCCACT  150

seq1  AGCATATAAAACACATTCGTAGCTAATTCAAAGGCTAGGGATGTATACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATAAAACACATTCGTAGCTAATTCAAAGGCTAGGGATGTATACGC  200

seq1  TAAGCAGGTGAGCTCTGGCCTTCTCGTTCTGTGCTCCTCTATCTCACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGTGAGCTCTGGCCTTCTCGTTCTGTGCTCCTCTATCTCACCAG  250

seq1  CTAAACCAGGGGTTCCTGTGGCTATACTCATTTTCTTCAGCACCTATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAGGGGTTCCTGTGGCTATACTCATTTTCTTCAGCACCTATACT  300

seq1  CTGACTAACGTCAGCTTTGCATTTTCTAACCCCTTGTAGATGTGACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAACGTCAGCTTTGCATTTTCTAACCCCTTGTAGATGTGACCTGG  350

seq1  ACCTTCCCATGCAACAGTCTGTGAAATTGGACCATCTGTAATTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCATGCAACAGTCTGTGAAATTGGACCATCTGTAATTTTTGTTT  400

seq1  TTTGAGATCCTTTCATATATTGGTTAGATCATTAGAAATGTTATTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATCCTTTCATATATTGGTTAGATCATTAGAAATGTTATTATCTG  450

seq1  CTTTGTTACTTTCTAGAGTAACTGAGGACCTTTGTCCTGATTCTTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTACTTTCTAGAGTAACTGAGGACCTTTGTCCTGATTCTTCCAGA  500

seq1  GAAGTCACACTAGTTTGGAGCAGTCTCTGTGTAAGACACTCCTCCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACACTAGTTTGGAGCAGTCTCTGTGTAAGACACTCCTCCACATC  550

seq1  TTCCTCCCTTTCTCTTACATAGGAGCAGTTGTCTTATATGCTGCAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTTTCTCTTACATAGGAGCAGTTGTCTTATATGCTGCAAAGAC  600

seq1  TTGAATTGCCTAGAAAGAAAATCTATTTCCCGTAGATTTTCTTATCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCCTAGAAAGAAAATCTATTTCCCGTAGATTTTCTTATCCTGC  650

seq1  CACAGGCTTGGATAATGGAGAAGTCCAACGCTGCAAAGGGGTCTCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTGGATAATGGAGAAGTCCAACGCTGCAAAGGGGTCTCTTTCC  700

seq1  AAAGGGCATTGTTTTTATTCTCCTGGCACGTTAGGTGCAAAGTGATGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCATTGTTTTTATTCTCCTGGCACGTTAGGTGCAAAGTGATGGAT  750

seq1  TCCGGTGCATTTCTCTCAGCTCTATGGATAAACCAGCATTTCTGCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGCATTTCTCTCAGCTCTATGGATAAACCAGCATTTCTGCTTTAT  800

seq1  CTTTTGTATTTTCATTCACACAACCTTCATCTCCATTCTTTTTAAAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTATTTTCATTCACACAACCTTCATCTCCATTCTTTTTAAAAGTG  850

seq1  ACTCAGATCTGTTGATCGATACCCTCATCAAGTTGACTTACCCGTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATCTGTTGATCGATACCCTCATCAAGTTGACTTACCCGTGTTTC  900

seq1  TGTTGAAACTTTACCGTTTCATGGAGTAATTACTTATGTTCTGTTACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAACTTTACCGTTTCATGGAGTAATTACTTATGTTCTGTTACATA  950

seq1  GCCTAAGACCCTGGGGCCAGTCTTGAAATTAAGGGCTCTAGGGATCT-CT  999
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GCCTAAGACCCTGGGGCCAGTC-TGAAATTAAGGGCTCTAGGGATCTCCT  999

seq1  CACTCCTTTAGAAGATTGTTAGCATAGGAAACCAAGCCTTGACTG-AATT  1048
      |||||||||||| |||||||||||||||||||| ||||||||||| ||||
seq2  CACTCCTTTAGAGGATTGTTAGCATAGGAAACC-AGCCTTGACTGAAATT  1048

seq1  TCAGAATTTTCCAGCTTTTTAAAGTAGTATTT--CTGAGCTTCTCATTTA  1096
      |||||   || |||||||||||||||||||||   |||||||||||||  
seq2  TCAGA---TTTCAGCTTTTTAAAGTAGTATTTTCTTGAGCTTCTCATT--  1093

seq1  AAAGACTTGCCGT-CTTACTTCCATGGGC--TTTTCTTCAATG-CTGTGG  1142
      ||||||||| ||| ||||||| ||||| |  |||||||||||| ||||| 
seq2  AAAGACTTGGCGTCCTTACTT-CATGGACCTTTTTCTTCAATGCCTGTGA  1142

seq1  TCAGC  1147
      |||||
seq2  TCAGC  1147


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