BAC Information

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BAC

Clone NameB6Ng01-218G23
Chromosome3 (Build37)
Map Location 119,455,133 - 119,456,321
singlet/doubletsinglet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218G23.bB6Ng01-218G23.g
ACCGA034564GA034565
length1,195774
definitionB6Ng01-218G23.b B6Ng01-218G23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggtaattttaatttacttgtgttctttagtcattggacagt
tttggtatgaagttgaattttagtatttttgctaattattattctacata
gactgcacatggcttgatggtaaccttagttgatggtttaatgatttttc
tcctttccattgaaagcctaattttagcttttcaagcattcagatttact
cacctatgttttaaagtatttttaacttttcataggaatccatttttttc
atactgattataaagaatatttctgtatgtctttcagccaacggtaacga
tagtaagaaatttaaaggagaagataaaatggatggggctccctctcgtg
tacttcacattcgaaagttacctggtgaagtgactgaaacagaagttatt
gctttaggtttaccttttggtaaggtgactaacatccttatgctgaaagg
aaaaaaccaggtacagtgcacaagcgttactactagcatgttaaattaca
cagaaggaggcttatctgtcacctaaaggattcattgtctgacaaaatta
aaagaagttcagtttcctgtttgttttgttttgtaatagcagaaaccagg
ggtactagtagaatctattacatgagtttattcatctggtagcattagaa
atcaggcttaaattttggatgctcattcattaacagtagcagtaggacct
attcatattaaaaatgacattatgttttaaaatttccaaaaattttattt
agaagaatttatttaatattagaaaattaatattctctaaacgtagctaa
tataataattattccgtccttttaatttttcagttgtattttttatatga
gacctttaggatagtaacataaaattttggtgctagaaaatgcttatttt
ctctagttttttaaaaacagatttatgggatgtagtaagttgtagatgga
accaacaaatcgaaggtattacttgaatcaaccccaatattatttttaaa
attaagttgattctaaggacatgttttattatttcaaatgaatatgtctt
gtttgaggattaccgcgcattgttgagcttaaggccccagccagagcctg
gtggggcgtccatccctgggatgggagtccaagtcagggcttctgtaagc
ctagggctacggtgatggctgtgactttaggtcctctctgagaag

gaattccttctgtttccattttgtggaatagtttggggaatattggctga
aaacggataaagaaaatgaggtacatctactcaatggaatactattcagc
cactaaaaacaaactaagacatcatgaactttgcagttaaatggatggaa
cttgagaatttcatcctgagtgaggtaacccagaccccaaaggatattta
tcatatgtactcaattataagtggatattagccataaaatacagggtacc
catgctacactgcacagacccaaagaagctgaacaaaaaggaaggcccaa
gggagtaggtttgaatcttacttagaaaggagaatataatagtcatagga
ggaagacagaaggagagaactggctgggagaggggatgtggaggggaatg
tagccagacaggaaccccagtagagtaatagtgacacctacccacccaca
aaactttgaccccaaatttatcctgcctacaaataatgtagagaaagggg
acagagcagagactgaggaaatggcctaacaatgaccagagacccatccc
acaggtaagcaccaatctctgatactattaaatgatactgttatgcttgc
tgacatgagcctagcatggctgtccttctgagagactccacccagcagct
gacttatacagatgcagagacccacagccaaacattgggatggagtttaa
gaactcttatggaagaatttgtggaaaagactgtggggaccttgaaggtg
actgaatctcccaggaagaccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119455133_119456321
seq2: B6Ng01-218G23.b_45_1239 (reverse)

seq1  CTTCTC-CAGAGGACCTAAGTTCACAG-CATCACCAT-GCACAAGGCTTA  47
      ||||||  |||||||||||  |||||| ||||||| | || | |||||||
seq2  CTTCTCAGAGAGGACCTAAAGTCACAGCCATCACCGTAGCCCTAGGCTTA  50

seq1  CAGAAGCCTTGCCTGGAACTCCAATCCCAAGGAATGGACGCCC--ACAGG  95
      |||||||| || || | ||||| ||||| ||| ||||||||||   ||||
seq2  CAGAAGCCCTGACTTGGACTCCCATCCC-AGGGATGGACGCCCCACCAGG  99

seq1  CTTCTGCTGGGGCCTT-AGCTCA--CATGCGCG--TATCCTCAAACAAGA  140
      ||   ||||||||||| ||||||   |||||||   ||||||||||||||
seq2  CTCTGGCTGGGGCCTTAAGCTCAACAATGCGCGGTAATCCTCAAACAAGA  149

seq1  CATA-TCATTTGAAAATAATAAAACATGT-CTTAGAAATCACTTAATTTT  188
      |||| ||||||| |||||||||||||||| |||||||   ||||||||||
seq2  CATATTCATTTG-AAATAATAAAACATGTCCTTAGAATCAACTTAATTTT  198

seq1  TAAAATAATATTGGGGTTGATTCAAGTAATACCCTTCGATTTTGTTGGTT  238
       |||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AAAAATAATATTGGGGTTGATTCAAGTAATA-CCTTCGA-TTTGTTGGTT  246

seq1  CCATCTACAACTTACTACATCCCATAAATCTGTTTTTTAAAAAAACTAGA  288
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CCATCTACAACTTACTACATCCCATAAATCTGTTTTT--AAAAAACTAGA  294

seq1  GAAAATAAGCATTTTCTAGCACCAAAATTTTATGTTACTATCCTAAAGGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGCATTTTCTAGCACCAAAATTTTATGTTACTATCCTAAAGGT  344

seq1  CTCATATAAAAAATACAACTGAAAAATTAAAAGGACGGAATAATTATTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATAAAAAATACAACTGAAAAATTAAAAGGACGGAATAATTATTAT  394

seq1  ATTAGCTACGTTTAGAGAATATTAATTTTCTAATATTAAATAAATTCTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTACGTTTAGAGAATATTAATTTTCTAATATTAAATAAATTCTTC  444

seq1  TAAATAAAATTTTTGGAAATTTTAAAACATAATGTCATTTTTAATATGAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATTTTTGGAAATTTTAAAACATAATGTCATTTTTAATATGAA  494

seq1  TAGGTCCTACTGCTACTGTTAATGAATGAGCATCCAAAATTTAAGCCTGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTACTGCTACTGTTAATGAATGAGCATCCAAAATTTAAGCCTGA  544

seq1  TTTCTAATGCTACCAGATGAATAAACTCATGTAATAGATTCTACTAGTAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGCTACCAGATGAATAAACTCATGTAATAGATTCTACTAGTAC  594

seq1  CCCTGGTTTCTGCTATTACAAAACAAAACAAACAGGAAACTGAACTTCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCTGCTATTACAAAACAAAACAAACAGGAAACTGAACTTCTT  644

seq1  TTAATTTTGTCAGACAATGAATCCTTTAGGTGACAGATAAGCCTCCTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTCAGACAATGAATCCTTTAGGTGACAGATAAGCCTCCTTCT  694

seq1  GTGTAATTTAACATGCTAGTAGTAACGCTTGTGCACTGTACCTGGTTTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTAACATGCTAGTAGTAACGCTTGTGCACTGTACCTGGTTTTT  744

seq1  TCCTTTCAGCATAAGGATGTTAGTCACCTTACCAAAAGGTAAACCTAAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAGCATAAGGATGTTAGTCACCTTACCAAAAGGTAAACCTAAAG  794

seq1  CAATAACTTCTGTTTCAGTCACTTCACCAGGTAACTTTCGAATGTGAAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTTCTGTTTCAGTCACTTCACCAGGTAACTTTCGAATGTGAAGT  844

seq1  ACACGAGAGGGAGCCCCATCCATTTTATCTTCTCCTTTAAATTTCTTACT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGAGGGAGCCCCATCCATTTTATCTTCTCCTTTAAATTTCTTACT  894

seq1  ATCGTTACCGTTGGCTGAAAGACATACAGAAATATTCTTTATAATCAGTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTACCGTTGGCTGAAAGACATACAGAAATATTCTTTATAATCAGTA  944

seq1  TGAAAAAAATGGATTCCTATGAAAAGTTAAAAATACTTTAAAACATAGGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAATGGATTCCTATGAAAAGTTAAAAATACTTTAAAACATAGGT  994

seq1  GAGTAAATCTGAATGCTTGAAAAGCTAAAATTAGGCTTTCAATGGAAAGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATCTGAATGCTTGAAAAGCTAAAATTAGGCTTTCAATGGAAAGG  1044

seq1  AGAAAAATCATTAAACCATCAACTAAGGTTACCATCAAGCCATGTGCAGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCATTAAACCATCAACTAAGGTTACCATCAAGCCATGTGCAGT  1094

seq1  CTATGTAGAATAATAATTAGCAAAAATACTAAAATTCAACTTCATACCAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGAATAATAATTAGCAAAAATACTAAAATTCAACTTCATACCAA  1144

seq1  AACTGTCCAATGACTAAAGAACACAAGTAAATTAAAATTACCATTGAATT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCAATGACTAAAGAACACAAGTAAATTAAAATTACCATTGAATT  1194

seq1  C  1189
      |
seq2  C  1195


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