BAC Information

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BAC

Clone NameB6Ng01-218H06
Chromosome3 (Build37)
Map Location 79,289,510 - 79,456,648
singlet/doubletdoublet
Overlap geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneTmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H06.bB6Ng01-218H06.g
ACCGA034578GA034579
length1,2121,120
definitionB6Ng01-218H06.b B6Ng01-218H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,455,431 - 79,456,648)(79,289,510 - 79,290,623)
sequence
gaattctggaaacagccattgaaggcttctttggataagtcccttctctt
gttcactagctaatcagttatgcatatgttaagacatgtctagcatgcat
tcgtcatgcctgcttgtagttcttacccacacatgcttttactataaagt
caagtgattgattaagagttaaattttgaacttcagaattatgagagatt
ggtaaggaaatattttctattccactgaatcttatatgaatacattttct
accaagaaatgctgaaaacatatgtcaatgatgacattaagttaaatatg
ttataattttgtctccgctttgtaaccagctattttaagaaatttcagta
ctgtggatacgcaccacatgtgcgcagctgtaagcccaacacggatggga
tttcatctctagagaacctcttggcaagcatcatccagagagtctttgtc
tgggttgtatctgccattacctgctttggaaacatttttgttatttgtat
gcgaccatacatcagatctgagaacaagctgcatgccatgtcgatcattt
ctctctgctgtgagtatttcctgaataaaaaagaacaaggcttgaaatcg
ttgctactagaaaataaattctgtggggctggagcacacacttccagagg
acccaagctgggtcttttttaaggtctctgaacaactagaataattttca
ctcacagcttaaaatatgtaaatatggaaatgtctccaagtgagattgat
tttatttttaagtttttaaaaagtgattgtaaagtattacattaaatgag
gactataaagaaaaacaaacaaaacaaaaaaatcagacttcaggatgtta
cagcctgggtcccagagctgagggtgtacctgcagcccctcgagtaagta
agccctacaacgcccaccattgtgtgagtggccacgtttactatcacaga
cactgtgcaaagtctgacttctaatttatttctctgcaagctatgtgaga
aaacaaaattcacaaaatgtctacaattctgtatggtagctacaaattct
ggagtcaagttcatttctacacaggctgaggatactaacactgttaaaaa
aatagagaagttcacgctccacatttgaagaaaaagtagttttttcatgg
agtcattggctaataactaaccttgagtccagtcccgtggaggggagtat
ttggggtcaact
gaattccaggttccgtgagaaggcccttctcaatggaacaaggcaaacag
caacagtactgacatggctgtacacacacacacacacacacgtgcgcacg
cctgaatgaaaagtcatggtaaaggtcgggtaaagctagatgatagttac
catcaaaatcaaggtgggcaacgttgtctgtagttataggaggggaaatg
gatgtacactttcttgttggattagatttacaaggatttttttttttgcc
agaaaataactagttgctggaaacaaaggataatgctctgaaacacacag
gtgcattccactcagaccctcctgaagagtttctttccttctccatcaaa
ggaaacctcacaagtgtcttagatatgagaagcaccatgtttgtggtagc
caagtctgatgttcatgtaatccttagactctgatgaagagcagatctca
tcagggtggagaaaaagagatggcctgtttaaaacaagtcaagtgggatt
gcccgttctgaggagaaacaagaggaatgaagaatgatgtatgtaatgtc
tgtgagccccaccaagcactgtgatatgcacacagtagggattctgggaa
gaggatggagagaaactggagcagaaatagattttaaaacaaggactcct
caaaacctaaacttcacgagtgacataggtctgttcatccaaggtcaatg
aacgccaactatgaaaatccaaggaaaacccaaggaaaagtaaaacaacc
tgaagctgaactgtcaaaaagccaagggcaaaagggcgacctgaaggcgg
caggagagaactcactcccacaagaacaggtttctcacctacggcaacgg
tcgccgccacatcctaaactcacattttacaaaacatgcgtgtgagtccc
gtttctatcgtactatcctgttgaaagtcttttccaaccccactaatggc
ttccacaggccatggttggctggtgtgcctaatgtggaaatccttgagcc
acagtgcccacgggggcaaagctaccggatccactgcactcctaggagca
attcctgatcactgtgacgaagaaaggcagcctgagctcctctgctcacg
aggctgaaaaccccacacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79455431_79456648
seq2: B6Ng01-218H06.b_45_1255 (reverse)

seq1  GTTGA--CCAAATACTCCC--TCAGGGGCCTGGCCTCAAGTGTAGTTAAT  46
      |||||  ||||||||||||   || ||| |||| ||||||  |||||| |
seq2  GTTGACCCCAAATACTCCCCTCCACGGGACTGGACTCAAGGTTAGTTATT  50

seq1  AGACCCAAATGTGACTCCATTGGAAAAAACTAATTTTTC-TCCAATGT-G  94
      ||  ||||   |||||||||  |||||||||| |||||| || ||||| |
seq2  AG--CCAA---TGACTCCAT--GAAAAAACTACTTTTTCTTCAAATGTGG  93

seq1  AGCGTTGAC-TCTCTATTTTTTTTAACAGTGTAGTTATCCTTCAGCCCTG  143
      |||||  || |||||| |||||||||||||||   ||||| |||| ||||
seq2  AGCGTGAACTTCTCTA-TTTTTTTAACAGTGTTAGTATCC-TCAG-CCTG  140

seq1  TGTAGGAAAATTGAACTTGACT-CAGAATTTTGTAGCTAACCATACAGAA  192
      |||||   || ||||||||||| ||||| ||||||||| |||||||||||
seq2  TGTAG---AAATGAACTTGACTCCAGAA-TTTGTAGCT-ACCATACAGAA  185

seq1  TTGTAGACATTTTGTGAATTTTG-TTTCTCACATAGCTTGCAGAGAAAAT  241
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TTGTAGACATTTTGTGAATTTTGTTTTCTCACATAGCTTGCAGAG-AAAT  234

seq1  AAATTAGAAGTCAGACTTTGCACAGTGTCTGTGATAGTAAACGTGGCCAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAGTCAGACTTTGCACAGTGTCTGTGATAGTAAACGTGGCCAC  284

seq1  TCACACAATGGTGGGCGTTGTAGGGCTTACTTACTCGAGGGGCTGCAGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATGGTGGGCGTTGTAGGGCTTACTTACTCGAGGGGCTGCAGGT  334

seq1  ACACCCTCAGCTCTGGGACCCAGGCTGTAACATCCTGAAGTCTGATTTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCAGCTCTGGGACCCAGGCTGTAACATCCTGAAGTCTGATTTTT  384

seq1  TTGTTTTGTTTGTTTTTCTTTATAGTCCTCATTTAATGTAATACTTTACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTGTTTTTCTTTATAGTCCTCATTTAATGTAATACTTTACA  434

seq1  ATCACTTTTTAAAAACTTAAAAATAAAATCAATCTCACTTGGAGACATTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTTAAAAACTTAAAAATAAAATCAATCTCACTTGGAGACATTT  484

seq1  CCATATTTACATATTTTAAGCTGTGAGTGAAAATTATTCTAGTTGTTCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTACATATTTTAAGCTGTGAGTGAAAATTATTCTAGTTGTTCAG  534

seq1  AGACCTTAAAAAAGACCCAGCTTGGGTCCTCTGGAAGTGTGTGCTCCAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTAAAAAAGACCCAGCTTGGGTCCTCTGGAAGTGTGTGCTCCAGC  584

seq1  CCCACAGAATTTATTTTCTAGTAGCAACGATTTCAAGCCTTGTTCTTTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGAATTTATTTTCTAGTAGCAACGATTTCAAGCCTTGTTCTTTTT  634

seq1  TATTCAGGAAATACTCACAGCAGAGAGAAATGATCGACATGGCATGCAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAAATACTCACAGCAGAGAGAAATGATCGACATGGCATGCAGC  684

seq1  TTGTTCTCAGATCTGATGTATGGTCGCATACAAATAACAAAAATGTTTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAGATCTGATGTATGGTCGCATACAAATAACAAAAATGTTTCC  734

seq1  AAAGCAGGTAATGGCAGATACAACCCAGACAAAGACTCTCTGGATGATGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTAATGGCAGATACAACCCAGACAAAGACTCTCTGGATGATGC  784

seq1  TTGCCAAGAGGTTCTCTAGAGATGAAATCCCATCCGTGTTGGGCTTACAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGAGGTTCTCTAGAGATGAAATCCCATCCGTGTTGGGCTTACAG  834

seq1  CTGCGCACATGTGGTGCGTATCCACAGTACTGAAATTTCTTAAAATAGCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCACATGTGGTGCGTATCCACAGTACTGAAATTTCTTAAAATAGCT  884

seq1  GGTTACAAAGCGGAGACAAAATTATAACATATTTAACTTAATGTCATCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAAGCGGAGACAAAATTATAACATATTTAACTTAATGTCATCAT  934

seq1  TGACATATGTTTTCAGCATTTCTTGGTAGAAAATGTATTCATATAAGATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATGTTTTCAGCATTTCTTGGTAGAAAATGTATTCATATAAGATT  984

seq1  CAGTGGAATAGAAAATATTTCCTTACCAATCTCTCATAATTCTGAAGTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAATAGAAAATATTTCCTTACCAATCTCTCATAATTCTGAAGTTC  1034

seq1  AAAATTTAACTCTTAATCAATCACTTGACTTTATAGTAAAAGCATGTGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAACTCTTAATCAATCACTTGACTTTATAGTAAAAGCATGTGTG  1084

seq1  GGTAAGAACTACAAGCAGGCATGACGAATGCATGCTAGACATGTCTTAAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAACTACAAGCAGGCATGACGAATGCATGCTAGACATGTCTTAAC  1134

seq1  ATATGCATAACTGATTAGCTAGTGAACAAGAGAAGGGACTTATCCAAAGA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATAACTGATTAGCTAGTGAACAAGAGAAGGGACTTATCCAAAGA  1184

seq1  AGCCTTCAATGGCTGTTTCCAGAATTC  1218
      |||||||||||||||||||||||||||
seq2  AGCCTTCAATGGCTGTTTCCAGAATTC  1211

seq1: chr3_79289510_79290623
seq2: B6Ng01-218H06.g_65_1184

seq1  GAATTCCAGGTTCCGTGAGAAGGCCCTTCTCAATGGAACAAGGCAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCCGTGAGAAGGCCCTTCTCAATGGAACAAGGCAAACAG  50

seq1  CAACAGTACTGACATGGCTGTACACACACACACACACACACGTGCGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTACTGACATGGCTGTACACACACACACACACACACGTGCGCACG  100

seq1  CCTGAATGAAAAGTCATGGTAAAGGTCGGGTAAAGCTAGATGATAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGAAAAGTCATGGTAAAGGTCGGGTAAAGCTAGATGATAGTTAC  150

seq1  CATCAAAATCAAGGTGGGCAACGTTGTCTGTAGTTATAGGAGGGGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATCAAGGTGGGCAACGTTGTCTGTAGTTATAGGAGGGGAAATG  200

seq1  GATGTACACTTTCTTGTTGGATTAGATTTACAAGGATTTTTTTTTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACACTTTCTTGTTGGATTAGATTTACAAGGATTTTTTTTTTTGCC  250

seq1  AGAAAATAACTAGTTGCTGGAAACAAAGGATAATGCTCTGAAACACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAACTAGTTGCTGGAAACAAAGGATAATGCTCTGAAACACACAG  300

seq1  GTGCATTCCACTCAGACCCTCCTGAAGAGTTTCTTTCCTTCTCCATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCCACTCAGACCCTCCTGAAGAGTTTCTTTCCTTCTCCATCAAA  350

seq1  GGAAACCTCACAAGTGTCTTAGATATGAGAAGCACCATGTTTGTGGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTCACAAGTGTCTTAGATATGAGAAGCACCATGTTTGTGGTAGC  400

seq1  CAAGTCTGATGTTCATGTAATCCTTAGACTCTGATGAAGAGCAGATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGATGTTCATGTAATCCTTAGACTCTGATGAAGAGCAGATCTCA  450

seq1  TCAGGGTGGAGAAAAAGAGATGGCCTGTTTAAAACAAGTCAAGTGGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGAGAAAAAGAGATGGCCTGTTTAAAACAAGTCAAGTGGGATT  500

seq1  GCCCGTTCTGAGGAGAAACAAGAGGAATGAAGAATGATGTATGTAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTCTGAGGAGAAACAAGAGGAATGAAGAATGATGTATGTAATGTC  550

seq1  TGTGAGCCCCACCAAGCACTGTGATATGCACACAGTAGGGATTCTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCCCACCAAGCACTGTGATATGCACACAGTAGGGATTCTGGGAA  600

seq1  GAGGATGGAGAGAAACTGGAGCAGAAATAGATTTTAAAACAAGGACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGAGAGAAACTGGAGCAGAAATAGATTTTAAAACAAGGACTCCT  650

seq1  CAAAACCTAAACTTCACGAGTGACATAGGTCTGTTCATCCAAGGTCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTAAACTTCACGAGTGACATAGGTCTGTTCATCCAAGGTCAATG  700

seq1  AACGCCAACTATGAAAATCCAAGGAAAACCCAAGGAAAAGTAAAACAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCAACTATGAAAATCCAAGGAAAACCCAAGGAAAAGTAAAACAACC  750

seq1  TGAAGCTGAACTGTCAAAAAGCCAAGGGCAAAAGGGCGACCTGAAGGCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAACTGTCAAAAAGCCAAGGGCAAAAGGGCGACCTGAAGGCGG  800

seq1  CAGGAGAGAACTCACTCCCACAAGAACAGGTTTCTCACCTACGGCAACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAACTCACTCCCACAAGAACAGGTTTCTCACCTACGGCAACGG  850

seq1  TCGCCGCCACATCCTAAACTCACATTTTACAAAACATGCGTGTGAGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGCCACATCCTAAACTCACATTTTACAAAACATGCGTGTGAGTCCC  900

seq1  GTTTCTATCGTACTATCCTGTTGAAAGTCTTTTCCAA-CCCACTAATGGC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTTCTATCGTACTATCCTGTTGAAAGTCTTTTCCAACCCCACTAATGGC  950

seq1  TTCCACAGGCCATGG-TGGCTGGTGTGCCTAATGTGGAAATCCTTGAG-C  997
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TTCCACAGGCCATGGTTGGCTGGTGTGCCTAATGTGGAAATCCTTGAGCC  1000

seq1  ACAGTGCCCACGGGGGCAAAGCCACCGGAT-CACTGCACTCCTAGGAGCA  1046
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  ACAGTGCCCACGGGGGCAAAGCTACCGGATCCACTGCACTCCTAGGAGCA  1050

seq1  ATTCCTGATCACTGTGACGAGAGAAGGCAG-CTGAGCTCCTCTGCTCACG  1095
      ||||||||||||||||||||   ||||||| |||||||||||||||||||
seq2  ATTCCTGATCACTGTGACGAAGAAAGGCAGCCTGAGCTCCTCTGCTCACG  1100

seq1  AGGCTG-AGACACCACACGG  1114
      |||||| | || ||||||||
seq2  AGGCTGAAAACCCCACACGG  1120