BAC Information

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BAC

Clone NameB6Ng01-218I06
Chromosome3 (Build37)
Map Location 127,078,933 - 127,251,431
singlet/doubletdoublet
Overlap geneLOC100043361, LOC100043364, Larp7
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream gene4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218I06.bB6Ng01-218I06.g
ACCGA034624GA034625
length1,062888
definitionB6Ng01-218I06.b B6Ng01-218I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,078,933 - 127,079,989)(127,250,545 - 127,251,431)
sequence
gaattccaacacaaaagtggcccctgtgccatctcgacttctcctttctc
cataagacacaaacaggagcagcttcagtgcagagctaattagctctttg
ctgtacaatagcccttttctcaagcctgtggcttctcacccaaatgataa
aaagctgtttcagttcgagactttcgcttaattggtttgtaccctagcag
ggaactcctggctcccgttgcatatccctacatagagggtagccacaatt
ctctgcctcccagcataacatagttcttctctaagatttatgcctggctt
tcatgttcacccactgaattaaatccaaagctctactccttttagcttca
gctaccttccctgaggaaagcacggctttggaaacttgggaaaggaaact
tgtttgcccttagaaatgtccagtgaaattaacagtgaagcattcttttg
tgtcatttggcagcccttacggccgaggactccaagtcacaatagcccca
gccccagtcacccaaccttgaacagcaaggctgaagctctcaactatcca
tatctttccactttaaaatgttagcttttcctctacgctcctggcacaca
tcaaactcaccgcagtcaccaagtcccgcattatgcagtgactgtctttt
ctgaaatataaggtgacacagtttttagatctaaggatggatattagaca
tcatttttccaaccgcttcatttttccagatacttaaattaaggcccaga
gggttcaagagtcttttccacttagcagcagggcgggtccagctacacaa
tcctcttagttattttctagtgttcaaataaaaactgttttaaaaggaga
gggttgtgggagggggggaaaaaaaaaaacttggggtcacattaaatggc
aaatctcgctcaaagtgactgtgtgggatgagaacgtgtctaagaaaagg
aatgactctcagccaaatatgttttgttcccttgattgacacagcccagc
aatgatgtctcatcagagtcattttcctacataagagcatagccattttc
tgatgtgtaccc
gaattctgtttttgtcagataaagtttgcgatatcctctaaatgaacaaa
tggagatgtcaagtgtgtaattgactgttggaatatggagctaatgagag
tgtgtatgtatgagatagagagcccagaattgaatagccaggaccctcag
agaggatagatgagacaggaggccaagataggagtttagtcacagttgga
agtgtcccttttctggaaggatccagaaaaggcaaacttaaagccagatg
aagaggtcaggtaactgttggcattaggcaaacactgagctcattggggt
tccgcttaaatggtaggaatgaaagcctggaaggatacggtgagttgaaa
acctgagatgagatccagtattcacctattttttaaagacaagtacactg
tagctgtcttcagacacgccagaagagggcggcagatccccttacagatt
atagatggttgtgaggcaccatgtggttgctgggaattgaactcaggagc
agttcatctctccagccctcccccccccccccatagggctacaatgtact
taattagtaattatcaggtagagggtttttttttcctcttttttttaatt
aggtattttcctcgtttacatttccaatgctatcccaaaagtcccccata
cccacccccccaatcccctacccacccactcccccttttttggccttggc
gttcccctgtactggggcatataaagtttacaagtccaaagggcctctct
ttccagtggtggctgactaggccatcttttgaggtagaggttttactact
gaatttactacagaatttgcacttgcctgacagaccagctttaaaaacat
ccttactgatgtcagtgagatggctgcctgcagcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127078933_127079989
seq2: B6Ng01-218I06.b_43_1104

seq1  GAATTCCAACACAAAAGTGGCCCCTGTGCCATCTCGACTTCTCCTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACAAAAGTGGCCCCTGTGCCATCTCGACTTCTCCTTTCTC  50

seq1  CATAAGACACAAACAGGAGCAGCTTCAGTGCAGAGCTAATTAGCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACACAAACAGGAGCAGCTTCAGTGCAGAGCTAATTAGCTCTTTG  100

seq1  CTGTACAATAGCCCTTTTCTCAAGCCTGTGGCTTCTCACCCAAATGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAATAGCCCTTTTCTCAAGCCTGTGGCTTCTCACCCAAATGATAA  150

seq1  AAAGCTGTTTCAGTTCGAGACTTTCGCTTAATTGGTTTGTACCCTAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTTTCAGTTCGAGACTTTCGCTTAATTGGTTTGTACCCTAGCAG  200

seq1  GGAACTCCTGGCTCCCGTTGCATATCCCTACATAGAGGGTAGCCACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCTGGCTCCCGTTGCATATCCCTACATAGAGGGTAGCCACAATT  250

seq1  CTCTGCCTCCCAGCATAACATAGTTCTTCTCTAAGATTTATGCCTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAGCATAACATAGTTCTTCTCTAAGATTTATGCCTGGCTT  300

seq1  TCATGTTCACCCACTGAATTAAATCCAAAGCTCTACTCCTTTTAGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCACCCACTGAATTAAATCCAAAGCTCTACTCCTTTTAGCTTCA  350

seq1  GCTACCTTCCCTGAGGAAAGCACGGCTTTGGAAACTTGGGAAAGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTCCCTGAGGAAAGCACGGCTTTGGAAACTTGGGAAAGGAAACT  400

seq1  TGTTTGCCCTTAGAAATGTCCAGTGAAATTAACAGTGAAGCATTCTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCCTTAGAAATGTCCAGTGAAATTAACAGTGAAGCATTCTTTTG  450

seq1  TGTCATTTGGCAGCCCTTACGGCCGAGGACTCCAAGTCACAATAGCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTGGCAGCCCTTACGGCCGAGGACTCCAAGTCACAATAGCCCCA  500

seq1  GCCCCAGTCACCCAACCTTGAACAGCAAGGCTGAAGCTCTCAACTATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTCACCCAACCTTGAACAGCAAGGCTGAAGCTCTCAACTATCCA  550

seq1  TATCTTTCCACTTTAAAATGTTAGCTTTTCCTCTACGCTCCTGGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCACTTTAAAATGTTAGCTTTTCCTCTACGCTCCTGGCACACA  600

seq1  TCAAACTCACCGCAGTCACCAAGTCCCGCATTATGCAGTGACTGTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCACCGCAGTCACCAAGTCCCGCATTATGCAGTGACTGTCTTTT  650

seq1  CTGAAATATAAGGTGACACAGTTTTTAGATCTAAGGATGGATATTAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATAAGGTGACACAGTTTTTAGATCTAAGGATGGATATTAGACA  700

seq1  TCATTTTTCCAACCGCTTCATTTTTCCAGATACTTAAATTAAGGCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCCAACCGCTTCATTTTTCCAGATACTTAAATTAAGGCCCAGA  750

seq1  GGGTTCAAGAGTCTTTTCCACTTAGCAGCAGGGCGGGTCCAGCTACACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAAGAGTCTTTTCCACTTAGCAGCAGGGCGGGTCCAGCTACACAA  800

seq1  TCCTCTTAGTTATTTTCTAGTGTTCAAATAAAAACTGTTTTAAAAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAGTTATTTTCTAGTGTTCAAATAAAAACTGTTTTAAAAGGAGA  850

seq1  GGGTTGTGGGAGGGGGG--AAAAAAAAAACTT-GGGTCACATTAAATGGC  897
      |||||||||||||||||  ||||||||||||| |||||||||||||||||
seq2  GGGTTGTGGGAGGGGGGGAAAAAAAAAAACTTGGGGTCACATTAAATGGC  900

seq1  AAATCTGGCTCAAAGTGACTGTGT-GGATGAGAACGTGCCTAAG-AAAGG  945
      |||||| ||||||||||||||||| ||||||||||||| ||||| |||||
seq2  AAATCTCGCTCAAAGTGACTGTGTGGGATGAGAACGTGTCTAAGAAAAGG  950

seq1  AATGACTCTCAGCCAAATATGTTTTGTTCCC-TGAGTGACACAGCCCAGC  994
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  AATGACTCTCAGCCAAATATGTTTTGTTCCCTTGATTGACACAGCCCAGC  1000

seq1  AATGATGTCTCCATCAGAGCTATTTTTCTACAT-AGAGCAGAGCCATTTT  1043
      |||||||||| ||||||||  ||||| |||||| |||||| ||||| |||
seq2  AATGATGTCT-CATCAGAGTCATTTTCCTACATAAGAGCATAGCCA-TTT  1048

seq1  TCTGATGTGTACCC  1057
      ||||||||||||||
seq2  TCTGATGTGTACCC  1062

seq1: chr3_127250545_127251431
seq2: B6Ng01-218I06.g_63_950 (reverse)

seq1  TCCTGCTGCAGGACGCCATCTCACTGACATCAGTAAGGATGTTTTTAAAG  50
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCAGGCAGCCATCTCACTGACATCAGTAAGGATGTTTTTAAAG  50

seq1  CTGGTCTGTCAGGCAAGTGCAAATTCTGTAGTAAATTCAAGTAGTAAAAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGGTCTGTCAGGCAAGTGCAAATTCTGTAGTAAATTC-AGTAGTAAAAC  99

seq1  CTCTACCTCAAAAGATGGCCTAGTCAGCCACCACTGGAAAGAGAGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTCAAAAGATGGCCTAGTCAGCCACCACTGGAAAGAGAGGCCCT  149

seq1  TTGGACTTGTAAACTTTATATGCCCCAGTACAGGGGAACGCCAAGGCC-A  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGGACTTGTAAACTTTATATGCCCCAGTACAGGGGAACGCCAAGGCCAA  199

seq1  AAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACT  249

seq1  TTTGGGATAGCATTGGAAATGTAAACGAGGAAAATACCTAATTAAAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATAGCATTGGAAATGTAAACGAGGAAAATACCTAATTAAAAAAA  299

seq1  AGAGGAAAAAAAAACCCTCTACCTGATAATTACTAATTAAGTACATTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAAAAAAACCCTCTACCTGATAATTACTAATTAAGTACATTGTA  349

seq1  GCCCTAT-GGGGGGGGGGGGAGGGCTGGAGAGATGAACTGCTCCTGAGTT  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGGGGGGGGGGGGGAGGGCTGGAGAGATGAACTGCTCCTGAGTT  399

seq1  CAATTCCCAGCAACCACATGGTGCCTCACAACCATCTATAATCTGTAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCAACCACATGGTGCCTCACAACCATCTATAATCTGTAAGG  449

seq1  GGATCTGCCGCCCTCTTCTGGCGTGTCTGAAGACAGCTACAGTGTACTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGCCGCCCTCTTCTGGCGTGTCTGAAGACAGCTACAGTGTACTTG  499

seq1  TCTTTAAAAAATAGGTGAATACTGGATCTCATCTCAGGTTTTCAACTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAATAGGTGAATACTGGATCTCATCTCAGGTTTTCAACTCAC  549

seq1  CGTATCCTTCCAGGCTTTCATTCCTACCATTTAAGCGGAACCCCAATGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCTTCCAGGCTTTCATTCCTACCATTTAAGCGGAACCCCAATGAG  599

seq1  CTCAGTGTTTGCCTAATGCCAACAGTTACCTGACCTCTTCATCTGGCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTTGCCTAATGCCAACAGTTACCTGACCTCTTCATCTGGCTTT  649

seq1  AAGTTTGCCTTTTCTGGATCCTTCCAGAAAAGGGACACTTCCAACTGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCCTTTTCTGGATCCTTCCAGAAAAGGGACACTTCCAACTGTGA  699

seq1  CTAAACTCCTATCTTGGCCTCCTGTCTCATCTATCCTCTCTGAGGGTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCTATCTTGGCCTCCTGTCTCATCTATCCTCTCTGAGGGTCCT  749

seq1  GGCTATTCAATTCTGGGCTCTCTATCTCATACATACACACTCTCATTAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCAATTCTGGGCTCTCTATCTCATACATACACACTCTCATTAGC  799

seq1  TCCATATTCCAACAGTCAATTACACACTTGACATCTCCATTTGTTCATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTCCAACAGTCAATTACACACTTGACATCTCCATTTGTTCATTT  849

seq1  AGAGGATATCGCAAACTTTATCTGACAAAAACAGAATTC  887
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATATCGCAAACTTTATCTGACAAAAACAGAATTC  888