BAC Information

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BAC

Clone NameB6Ng01-218I17
Chromosome3 (Build37)
Map Location 75,568,225 - 75,669,593
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218I17.bB6Ng01-218I17.g
ACCGA034642GA034643
length1,0811,184
definitionB6Ng01-218I17.b B6Ng01-218I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,568,225 - 75,569,304)(75,668,400 - 75,669,593)
sequence
gaattccttaaaagtagagggacagaaatgaggaaaaagggcaggggtac
aacacgtataaacacaatatgttggtactagaggcatccttgaaagctta
ccactgagttgttttagtgcccctggataatgcaagaattagctttgctt
ggatactcaataaaacatgcagcagattgttgaaataaaaaagcatatgt
tggccaatttgtagaagtaaatgtcttataaataatcataaatacaaaac
aaatatgctttatatccaaagtcagctcactttgggatattgcttctgat
ctttctgctaattttagatatgcaaagagctgaaggtcagaacctgaaaa
tccattatctagactcacagggttcctttccacccaccataaggtcagaa
ccagaacaatctttcctaaccttgagaagtatgaacaaaccttatttgga
ggagaagattggagaacagtaggaaatttctttggaaatacaaatttgga
taagatgcaattctgttgatgaggtagggtttgtgggccaagagtaagtc
acacctgtcatgctttgcctgcgcatgctccagggcaaatgtttcctgaa
ggcttggtctcagcttcaagtgagatgtctgaaaaagaagcttgagcttc
atgggatctgagtgtccagacactgaaggggaagggatggagtctcactc
tgaaaaacaatcagataaagaactcactgaattagaacaccaaaaataaa
atcagggatggctttgcattcctccacacaaattatatcaagattagata
tactactgacttcactcatttttgtgtggtagatatagtttacataggcc
tataggctaattctacatactaattttctgcattatttaaagtaacttct
ttactttttattagatgtagaaaagaatattgaattatatttgaacttta
aaatctatgcccagagtttagttggtctataaaatggtggataatatata
gtcgaattactgtttttacctagttaatatgctacttcaaattctaaaag
tgattttttgttgtcttttgttgcatatgtg

gaattcaactcagctgtggaaatcattaccaagctgttgtatgatcttga
ctgaatagtggagacatcaaggtcattgtttgggacagtaagtgtgcagg
tctgccctgcccttcatcaagggctctatgaaactcattgtaagctataa
gaagctaaagcatgatctgtcatgaaggaacaaagcattccatcactaat
gctggcagacaacatataactgcatatcgttgtgcataaataatttgttt
aaggaattgtttacttagaggtctaaataatatatttaaatagtgcgttg
aagaagctcattttagataaattaaaaacacatatgtataaaaagaaaca
gtaatgcttcaaaattatgtgttttggtaatgtctaaacaaatgatgttt
tagaaaacttccatgtataaatggataagcagtgaaagctgaatttttgt
ctatgtctgttttctagcatttccatagctacttaacaacagagtgactt
caaaatatttattccctcacagtactggaatagagacatctaaaaaaaac
aggtgtctgtaagatggggtcctgtgccctggctttgggtgtttgtggcc
atacaaccagtgcacctttcctgacagattcctcactgaaattttagtga
ttgaattccattataacttaatcttaaccacttatgtctgcaaagactat
ttcaaaggaagatcacattcttctaggaatctggatgaacactaatttag
gaaaacaagattcaacccaatacattggtttggcttttattctccccagc
tctatgttttaacttttaaaaagaaaaaagattacagctaaaaaaaaatc
tatttaatatgaatttttagagtttacctacttgaactgacaactttatt
tgggtaatatattactcaattttattaaattttattttgcaaaagaggta
gaaaagactttaatacttactagtctttgggaaggcttgcaaaatttctg
tagtctatagagaaataatatccaatattgtttactatgtctgaatacat
tttcatagactattgatctttcattgtctaactgactactgatgactatg
ttatggatctgcatgactgcttcttgtcagaaaggaagaagcatataaat
tggaagagagcgtggacccatgtgaagaccagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75568225_75569304
seq2: B6Ng01-218I17.b_44_1124

seq1  GAATTCCTTAAAAGTAGAGGGACAGAAATGAGGAAAAAGGGCAGGGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAAGTAGAGGGACAGAAATGAGGAAAAAGGGCAGGGGTAC  50

seq1  AACACGTATAAACACAATATGTTGGTACTAGAGGCATCCTTGAAAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTATAAACACAATATGTTGGTACTAGAGGCATCCTTGAAAGCTTA  100

seq1  CCACTGAGTTGTTTTAGTGCCCCTGGATAATGCAAGAATTAGCTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGTTGTTTTAGTGCCCCTGGATAATGCAAGAATTAGCTTTGCTT  150

seq1  GGATACTCAATAAAACATGCAGCAGATTGTTGAAATAAAAAAGCATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCAATAAAACATGCAGCAGATTGTTGAAATAAAAAAGCATATGT  200

seq1  TGGCCAATTTGTAGAAGTAAATGTCTTATAAATAATCATAAATACAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATTTGTAGAAGTAAATGTCTTATAAATAATCATAAATACAAAAC  250

seq1  AAATATGCTTTATATCCAAAGTCAGCTCACTTTGGGATATTGCTTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCTTTATATCCAAAGTCAGCTCACTTTGGGATATTGCTTCTGAT  300

seq1  CTTTCTGCTAATTTTAGATATGCAAAGAGCTGAAGGTCAGAACCTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTAATTTTAGATATGCAAAGAGCTGAAGGTCAGAACCTGAAAA  350

seq1  TCCATTATCTAGACTCACAGGGTTCCTTTCCACCCACCATAAGGTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCTAGACTCACAGGGTTCCTTTCCACCCACCATAAGGTCAGAA  400

seq1  CCAGAACAATCTTTCCTAACCTTGAGAAGTATGAACAAACCTTATTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAATCTTTCCTAACCTTGAGAAGTATGAACAAACCTTATTTGGA  450

seq1  GGAGAAGATTGGAGAACAGTAGGAAATTTCTTTGGAAATACAAATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGATTGGAGAACAGTAGGAAATTTCTTTGGAAATACAAATTTGGA  500

seq1  TAAGATGCAATTCTGTTGATGAGGTAGGGTTTGTGGGCCAAGAGTAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGCAATTCTGTTGATGAGGTAGGGTTTGTGGGCCAAGAGTAAGTC  550

seq1  ACACCTGTCATGCTTTGCCTGCGCATGCTCCAGGGCAAATGTTTCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTCATGCTTTGCCTGCGCATGCTCCAGGGCAAATGTTTCCTGAA  600

seq1  GGCTTGGTCTCAGCTTCAAGTGAGATGTCTGAAAAAGAAGCTTGAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTCTCAGCTTCAAGTGAGATGTCTGAAAAAGAAGCTTGAGCTTC  650

seq1  ATGGGATCTGAGTGTCCAGACACTGAAGGGGAAGGGATGGAGTCTCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTGAGTGTCCAGACACTGAAGGGGAAGGGATGGAGTCTCACTC  700

seq1  TGAAAAACAATCAGATAAAGAACTCACTGAATTAGAACACCAAAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACAATCAGATAAAGAACTCACTGAATTAGAACACCAAAAATAAA  750

seq1  ATCAGGGATGGCTTTGCATTCCTCCACACAAATTATATCAAGATTAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGATGGCTTTGCATTCCTCCACACAAATTATATCAAGATTAGATA  800

seq1  TACTACTGACTTCACTCATTTTTGTGTGGTAGATATAGTTTACATAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGACTTCACTCATTTTTGTGTGGTAGATATAGTTTACATAGGCC  850

seq1  TATAGGCTAATTCTACATACTAATTTTCTGCATTATTTAAAGTAACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTAATTCTACATACTAATTTTCTGCATTATTTAAAGTAACTTCT  900

seq1  TTACTTTTTATTAGATGTAGAAAAGAATATTGAATTATATTTGAACTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTATTAGATGTAGAAAAGAATATTGAATTATATTTGAACTTTA  950

seq1  AAATCTATGCCCAGAGTTTAGGTTGGTCTAATAAAATGGTGGATAATATA  1000
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  AAATCTATGCCCAGAGTTTA-GTTGGTCT-ATAAAATGGTGGATAATATA  998

seq1  TAGTCGAATTACTGTTTTTTACCTAGTT-ATATGCTACTTCAAATTCTAA  1049
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TAGTCGAATTACTG-TTTTTACCTAGTTAATATGCTACTTCAAATTCTAA  1047

seq1  AAGTGAATTTTTG-TGTCTTT--GTGCATATGTG  1080
      |||||| |||||| |||||||   ||||||||||
seq2  AAGTGATTTTTTGTTGTCTTTTGTTGCATATGTG  1081


seq1: chr3_75668400_75669593
seq2: B6Ng01-218I17.g_63_1246 (reverse)

seq1  CACTGGTCT---CAT-GGTC--AGCTCTCTCCAAATTTATATGCCTTTCT  44
      |||||||||   ||| ||||   ||||||| | |||||||||||  ||| 
seq2  CACTGGTCTTCACATGGGTCCACGCTCTCTTCCAATTTATATGC--TTC-  47

seq1  TTCTTTTCTGGAACAAGAAGCAGTCAAAGCAGATACAATAACATAGTCAT  94
      ||| ||||||  ||||||||||||| | |||||| | |||||||||||||
seq2  TTCCTTTCTG--ACAAGAAGCAGTC-ATGCAGAT-CCATAACATAGTCAT  93

seq1  CAGTAGTCAATTTTAGGACAAATGAAAGATCAATAGTCTATGAAAATGTA  144
      ||||||||| ||    ||| ||||||||||||||||||||||||||||||
seq2  CAGTAGTCAGTT---AGAC-AATGAAAGATCAATAGTCTATGAAAATGTA  139

seq1  TTCAAGACATAGTAAAACAAATATTGGGATATTATTTCTCCTATAGACTA  194
      ||| ||||||||||||   |||||| ||||||||||||| ||||||||||
seq2  TTC-AGACATAGTAAA--CAATATT-GGATATTATTTCT-CTATAGACTA  184

seq1  CAGAAATTTTGCAAGCCTTCCCAAAGACTAGTAAGTATTAAGTTCTTTTC  244
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CAGAAATTTTGCAAGCCTTCCCAAAGACTAGTAAGTATTAAAGTCTTTTC  234

seq1  TACCTCTTTTGCAAAATAAAATTTAATAAAATTGAGTAATATATTACCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTTGCAAAATAAAATTTAATAAAATTGAGTAATATATTACCCA  284

seq1  AATAAAGTTGTCAGTTCAAGTAGGTAAACTCTAAAAATTCATATTAAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTGTCAGTTCAAGTAGGTAAACTCTAAAAATTCATATTAAATA  334

seq1  GATTTTTTTTTAGCTGTAATCTTTTTTCTTTTTAAAAGTTAAAACATAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTAGCTGTAATCTTTTTTCTTTTTAAAAGTTAAAACATAGA  384

seq1  GCTGGGGAGAATAAAAGCCAAACCAATGTATTGGGTTGAATCTTGTTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAGAATAAAAGCCAAACCAATGTATTGGGTTGAATCTTGTTTTC  434

seq1  CTAAATTAGTGTTCATCCAGATTCCTAGAAGAATGTGATCTTCCTTTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAGTGTTCATCCAGATTCCTAGAAGAATGTGATCTTCCTTTGAA  484

seq1  ATAGTCTTTGCAGACATAAGTGGTTAAGATTAAGTTATAATGGAATTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTGCAGACATAAGTGGTTAAGATTAAGTTATAATGGAATTCAA  534

seq1  TCACTAAAATTTCAGTGAGGAATCTGTCAGGAAAGGTGCACTGGTTGTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAATTTCAGTGAGGAATCTGTCAGGAAAGGTGCACTGGTTGTAT  584

seq1  GGCCACAAACACCCAAAGCCAGGGCACAGGACCCCATCTTACAGACACCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAACACCCAAAGCCAGGGCACAGGACCCCATCTTACAGACACCT  634

seq1  GTTTTTTTTAGATGTCTCTATTCCAGTACTGTGAGGGAATAAATATTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTAGATGTCTCTATTCCAGTACTGTGAGGGAATAAATATTTTG  684

seq1  AAGTCACTCTGTTGTTAAGTAGCTATGGAAATGCTAGAAAACAGACATAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTCTGTTGTTAAGTAGCTATGGAAATGCTAGAAAACAGACATAG  734

seq1  ACAAAAATTCAGCTTTCACTGCTTATCCATTTATACATGGAAGTTTTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTCAGCTTTCACTGCTTATCCATTTATACATGGAAGTTTTCTA  784

seq1  AAACATCATTTGTTTAGACATTACCAAAACACATAATTTTGAAGCATTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATTTGTTTAGACATTACCAAAACACATAATTTTGAAGCATTAC  834

seq1  TGTTTCTTTTTATACATATGTGTTTTTAATTTATCTAAAATGAGCTTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTTATACATATGTGTTTTTAATTTATCTAAAATGAGCTTCTT  884

seq1  CAACGCACTATTTAAATATATTATTTAGACCTCTAAGTAAACAATTCCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCACTATTTAAATATATTATTTAGACCTCTAAGTAAACAATTCCTT  934

seq1  AAACAAATTATTTATGCACAACGATATGCAGTTATATGTTGTCTGCCAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTATTTATGCACAACGATATGCAGTTATATGTTGTCTGCCAGC  984

seq1  ATTAGTGATGGAATGCTTTGTTCCTTCATGACAGATCATGCTTTAGCTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGATGGAATGCTTTGTTCCTTCATGACAGATCATGCTTTAGCTTC  1034

seq1  TTATAGCTTACAATGAGTTTCATAGAGCCCTTGATGAAGGGCAGGGCAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTACAATGAGTTTCATAGAGCCCTTGATGAAGGGCAGGGCAGA  1084

seq1  CCTGCACACTTACTGTCCCAAACAATGACCTTGATGTCTCCACTATTCAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACACTTACTGTCCCAAACAATGACCTTGATGTCTCCACTATTCAG  1134

seq1  TCAAGATCATACAACAGCTTGGTAATGATTTCCACAGCTGAGTTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCATACAACAGCTTGGTAATGATTTCCACAGCTGAGTTGAATTC  1184


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