BAC Information

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BAC

Clone NameB6Ng01-218J08
Chromosome3 (Build37)
Map Location 124,412,390 - 124,413,480
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218J08.bB6Ng01-218J08.g
ACCGA034672GA034673
length1,2061,095
definitionB6Ng01-218J08.b B6Ng01-218J08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaaacaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcaacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagttaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcttaaacc
tgataagcagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
gaaaacaacgcccttctcaatagtcacaaatagtataaaatatcttggca
taactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacctctggtagaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagaaacagacaagtagaccaatgcaatacaattgaaga
cctagaaatgatcctacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaagacagcattttcaacaactggtgctggc
acaactggttgttatcatgtagaagaatgcgaatcgagccatacttatct
ccttgtactagatcaaatctagtggatcaaagactcacataaaccagaga
acactgaaacttatagagagaagtggggaaagcctgagatatggcacagg
caaaaatctgaacagacgcatggcatgtgctgtagatagagaattgacat
gactatgaatccaggttctgcaagcaaagaacactcgctcacctaggacc
caatgc

gaattctcatagattttcacgaaatactgaatttctaagcaagtaaaatc
atttaaccaacttagataaaatgactatgtaaactgcaaaaaatctttat
acgttgcatttgtatgttttttttttcattccaaattttttattaggtat
tttcttcatttacatttcaaatgctatcctgagggtatagaggaattttg
ggatagcatttttctagaattttatgttctaaaataataagtaaaattta
ttttggaaatttatgtaattaaatttattgttagcaaaagtattttattc
ctatgctaaaatggtttgagtttctttaaaattgtttgtattttgtttat
aagtgttaaactataaaatacaataaatgtaacaaagcatacaaatatga
atatatttaatattcctttaatcctttgaaccaataattatgaaaatata
ctatttctcaaaatatgtttagtagatatgctcttttcttgaggactgta
gagtcctgtatctattatttcaccttcaggttctgataagaggatcagaa
gatgccatttataggaagtttcaggcaaactgagctctgtggggagaact
tatctgataaaaatagaaatggaaaatttcactttcacacacaagaattt
taaaataataacataatttttaaaagtggttaatattaagctaaatggat
aaatgaaaagtgtttttttttcactttttttcatactgttttgctataaa
tcctcaagcccaggttggctcctttcatctaacctaggctggctcctaag
tttctttgttggcaaagatgtccttaaattattgatatattttccttttt
cctcctcagtgctggattacagatgtttagcacatgcccattttgtgaga
cactagacaccaaaacacagaacttcatgtatgctaccaataaaaccccc
atcaacataagatctttttgaaaacaggtcttctggttttgttttcttaa
tgctaaatcctattatcaagaactgtccctaataaccaataaaaacttcc
ttgcaatcaaggaagatattcaaatatagattacccgaagtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124412390_124413480
seq2: B6Ng01-218J08.g_67_1161

seq1  GAATTCTCATAGATTTTCACGAAATACTGAATTTCTAAGCAAGTAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGATTTTCACGAAATACTGAATTTCTAAGCAAGTAAAATC  50

seq1  ATTTAACCAACTTAGATAAAATGACTATGTAAACTGCAAAAAATCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCAACTTAGATAAAATGACTATGTAAACTGCAAAAAATCTTTAT  100

seq1  ACGTTGCATTTGTATGTTTTTTTTTTCATTCCAAATTTTTTATTAGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGCATTTGTATGTTTTTTTTTTCATTCCAAATTTTTTATTAGGTAT  150

seq1  TTTCTTCATTTACATTTCAAATGCTATCCTGAGGGTATAGAGGAATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTACATTTCAAATGCTATCCTGAGGGTATAGAGGAATTTTG  200

seq1  GGATAGCATTTTTCTAGAATTTTATGTTCTAAAATAATAAGTAAAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCATTTTTCTAGAATTTTATGTTCTAAAATAATAAGTAAAATTTA  250

seq1  TTTTGGAAATTTATGTAATTAAATTTATTGTTAGCAAAAGTATTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAATTTATGTAATTAAATTTATTGTTAGCAAAAGTATTTTATTC  300

seq1  CTATGCTAAAATGGTTTGAGTTTCTTTAAAATTGTTTGTATTTTGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTAAAATGGTTTGAGTTTCTTTAAAATTGTTTGTATTTTGTTTAT  350

seq1  AAGTGTTAAACTATAAAATACAATAAATGTAACAAAGCATACAAATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAAACTATAAAATACAATAAATGTAACAAAGCATACAAATATGA  400

seq1  ATATATTTAATATTCCTTTAATCCTTTGAACCAATAATTATGAAAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAATATTCCTTTAATCCTTTGAACCAATAATTATGAAAATATA  450

seq1  CTATTTCTCAAAATATGTTTAGTAGATATGCTCTTTTCTTGAGGACTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCAAAATATGTTTAGTAGATATGCTCTTTTCTTGAGGACTGTA  500

seq1  GAGTCCTGTATCTATTATTTCACCTTCAGGTTCTGATAAGAGGATCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGTATCTATTATTTCACCTTCAGGTTCTGATAAGAGGATCAGAA  550

seq1  GATGCCATTTATAGGAAGTTTCAGGCAAACTGAGCTCTGTGGGGAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTTATAGGAAGTTTCAGGCAAACTGAGCTCTGTGGGGAGAACT  600

seq1  TATCTGATAAAAATAGAAATGGAAAATTTCACTTTCACACACAAGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATAAAAATAGAAATGGAAAATTTCACTTTCACACACAAGAATTT  650

seq1  TAAAATAATAACATAATTTTTAAAAGTGGTTAATATTAAGCTAAATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATAACATAATTTTTAAAAGTGGTTAATATTAAGCTAAATGGAT  700

seq1  AAATGAAAAGTGTTTTTTTTTCACTTTTTTTCATACTGTTTTGCTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAGTGTTTTTTTTTCACTTTTTTTCATACTGTTTTGCTATAAA  750

seq1  TCCTCAAGCCCAGGTTGGCTCCTTTCATCTAACCTAGGCTGGCTCCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGCCCAGGTTGGCTCCTTTCATCTAACCTAGGCTGGCTCCTAAG  800

seq1  TTTCTTTGTTGGCAAAGATGTCCTTAAATTATTGATATATTTTCCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTGGCAAAGATGTCCTTAAATTATTGATATATTTTCCTTTTT  850

seq1  CCTCCTCAGTGCTGGATTACAGATGTTTAGCACATGCCCAATTTGTGAGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTCCTCAGTGCTGGATTACAGATGTTTAGCACATGCCCATTTTGTGAGA  900

seq1  CACTAGACACC-AAACACAGAACTTCATGTATGCTACCAATAAAACCCCC  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACACCAAAACACAGAACTTCATGTATGCTACCAATAAAACCCCC  950

seq1  ATCAACATAAGATC-TTTTGAAAACAAGGTC-TCTGGTTTTGTTTTCTTA  997
      |||||||||||||| |||||||||| ||||| ||||||||||||||||||
seq2  ATCAACATAAGATCTTTTTGAAAAC-AGGTCTTCTGGTTTTGTTTTCTTA  999

seq1  ATGCTAAATCCTATTATCAAG-ACTGTCCTAAATTACCAAT-AAAACTTC  1045
      ||||||||||||||||||||| |||||||  ||| |||||| ||||||||
seq2  ATGCTAAATCCTATTATCAAGAACTGTCCCTAATAACCAATAAAAACTTC  1049

seq1  CTGCAAACCAAGGAAAGATATACAAATATAGA-TACACGAAGTATCT  1091
      ||   || ||||| ||||||| |||||||||| ||| ||||||||||
seq2  CTTGCAATCAAGG-AAGATATTCAAATATAGATTACCCGAAGTATCT  1095


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