BAC Information

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BAC

Clone NameB6Ng01-218K21
Chromosome3 (Build37)
Map Location 79,719,411 - 79,720,250
singlet/doubletsinglet
Overlap gene1110032E23Rik
Upstream geneLOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144
Downstream geneEG626797, Gria2, Glrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218K21.bB6Ng01-218K21.g
ACCGA034743GA034744
length1,2191,139
definitionB6Ng01-218K21.b B6Ng01-218K21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacctatgagagcaaaccttcagtcttgtctttcttaggctgggt
taactcactgactatactgcttttccgttccatcatttatcagtacattt
cacaatttaatttctgttgtgactgaatagaattccattatgtatattta
cctcatttttattatatacccctctgctgatgggcaactaggttggttcc
atttctttgggcagctaggttggttccatttctttgctgctgttaaaaga
gtggcaataaacacagatgtctaagtattttctgtggcaaagtacagagt
tttgggtattcatctaccagtggtatagctgggtgatacagtatttcaat
ttttagatttttgaaaagacttcacattgtttgccgtagttcctgcaccc
cttcacactactgccattcaggaaggaggattcctctctccacatattct
cagtagcatttcttgtcatttattttcttgatgaaaaacattctaaggtg
gaatggactccaaaaataacttcaatgtgcatttctctggttggtaagga
tgttaaacaccttaaaaatatttattgtaaatctgcatttcttcttctga
gaacgatctgttcagttcattagcccactcactgactggatgtatatata
cactatattgagagtatttttcaataattcttcaccttatttgttgagac
aaggtctctcactgaagagttaatattgcttgggcagagaggctggctgg
tcagtcacacccaggaaatcctcctgcctcttcctcttcagtcctccttg
cttttcacatgggctctgggtgatcatgcttagatctccgtgcttgtgta
gcaagcactttaccatcatccataactaacagcaggaggtgtgggtgttt
aacttttaaagttctttatgcaatctatatattaaccccaagcctgaaag
attttctccacaatgaaattctttagacggcaaaactagtcttccatcaa
caaagactatgactgaatttatagtatctaaagcaacaaatagtcaataa
atacttgaggtgtgttcaacacctagctaccaggaaatgcttaatggaac
ttcttgaaatgcactgcccagttagaatgctgtctcaactgagacaaccc
tggactatgaatctggaaggaaccatcaattgtcagcaggaggtgttaga
acacatgtgtagtaccatg
gaattcttcataagctgtcttgcttcctcatctggggcactgccgtgtgg
ccgctgtacttctctccgtgttcaatggtttccgctgggctgctgtgcac
tgcttggctcacctgggttatggctgcaccctcacctgctgctcaaggca
gggccatggctgttatcaatctgtcgtctatatttgctgctgctgaagga
atcgtaggctgggttgtagactcagttagggtttcttttgttgtgaagag
acactgtgaccaaggcaattcttataaaggacaacatttaattgaggctg
gattacaggttcagaggttcagtccattatcataaaggcaggaagcatgg
cagcatccaggcaggcatggcactggagtagctgagagttctacatctag
ttctaaaggaagccaaaagcaggctggcttccaagaagctaggaggaagg
tctcaaagcctacccattcagtggcacacttcctccaacaaggccacacc
ccctaatagtcccattccctgtgccaaacacattcaaaccacaatagtgc
tacaatttccacccccagtataatttctcatggggagaaatgtactcaga
atgctggggaggcaataattgcctacttctaagacaatctcttttgactt
tagcactctgtcttccattctgcctcacatgcctttggtgaactgctgct
ttggccttaaagctttcccaaggttccctccacagcatgtggcttctgtt
aaaatttacctgaggaactctggcttttcacagatctcatcacttccgat
attggttgtcctggagacgcccatttgtgtaattcccagtttaaatttta
agtcattcagatctactagagcatcttctacctcatcaagattgtgccct
cacccgtggctcagtaaagtagcagagccccttgggaattaatttctttc
ttagctcttcagcaaacccaaactcattagcttggtgagaagcactgaat
gtcgtcctctctccacctcccggtttcctagtaacaatatttttcctgtc
tttgtcttctagtcctgaatatcatgggggacccatctagctatacaatg
tgttcaagccagtcactgtattgtcttcaaggaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79719411_79720250
seq2: B6Ng01-218K21.g_358_1199

seq1  CTGGATTACAGGTTCAGAGGTTCAGTCCATTATCATAAAGGCAGGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTACAGGTTCAGAGGTTCAGTCCATTATCATAAAGGCAGGAAGCA  50

seq1  TGGCAGCATCCAGGCAGGCATGGCACTGGAGTAGCTGAGAGTTCTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATCCAGGCAGGCATGGCACTGGAGTAGCTGAGAGTTCTACATC  100

seq1  TAGTTCTAAAGGAAGCCAAAAGCAGGCTGGCTTCCAAGAAGCTAGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAAAGGAAGCCAAAAGCAGGCTGGCTTCCAAGAAGCTAGGAGGA  150

seq1  AGGTCTCAAAGCCTACCCATTCAGTGGCACACTTCCTCCAACAAGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAAAGCCTACCCATTCAGTGGCACACTTCCTCCAACAAGGCCAC  200

seq1  ACCCCCTAATAGTCCCATTCCCTGTGCCAAACACATTCAAACCACAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTAATAGTCCCATTCCCTGTGCCAAACACATTCAAACCACAATAG  250

seq1  TGCTACAATTTCCACCCCCAGTATAATTTCTCATGGGGAGAAATGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAATTTCCACCCCCAGTATAATTTCTCATGGGGAGAAATGTACTC  300

seq1  AGAATGCTGGGGAGGCAATAATTGCCTACTTCTAAGACAATCTCTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGGGGAGGCAATAATTGCCTACTTCTAAGACAATCTCTTTTGA  350

seq1  CTTTAGCACTCTGTCTTCCATTCTGCCTCACATGCCTTTGGTGAACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCACTCTGTCTTCCATTCTGCCTCACATGCCTTTGGTGAACTGCT  400

seq1  GCTTTGGCCTTAAAGCTTTCCCAAGGTTCCCTCCACAGCATGTGGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCCTTAAAGCTTTCCCAAGGTTCCCTCCACAGCATGTGGCTTCT  450

seq1  GTTAAAATTTACCTGAGGAACTCTGGCTTTTCACAGATCTCATCACTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTTACCTGAGGAACTCTGGCTTTTCACAGATCTCATCACTTCC  500

seq1  GATATTGGTTGTCCTGGAGACGCCCATTTGTGTAATTCCCAGTTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGTTGTCCTGGAGACGCCCATTTGTGTAATTCCCAGTTTAAATT  550

seq1  TTAAGTCATTCAGATCTACTAGAGCATCTTCTACCTCATCAAGATTGTG-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAAGTCATTCAGATCTACTAGAGCATCTTCTACCTCATCAAGATTGTGC  600

seq1  CCTCACCCGTGGCTCAGTAAAGTAGCAGAGCCCCTTGGGAATTAATTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCGTGGCTCAGTAAAGTAGCAGAGCCCCTTGGGAATTAATTTCT  650

seq1  TTCTTAGCTCTTCAGCAAACCCAAACCCATTAGGCTTGGTGAAGAAGCAC  699
      |||||||||||||||||||||||||| ||||| |||||||| ||||||||
seq2  TTCTTAGCTCTTCAGCAAACCCAAACTCATTA-GCTTGGTG-AGAAGCAC  698

seq1  TGAATGTCGT-CTCTCTC--ACTCCCGGTTTCCTTAGTAACAATATTTTT  746
      |||||||||| |||||||   |||||||||||| ||||||||||||||||
seq2  TGAATGTCGTCCTCTCTCCACCTCCCGGTTTCC-TAGTAACAATATTTTT  747

seq1  CCTGTC-TTGTCTTCTAGTCCCTGATATTCAT-GGGGACCCATCTAGCTA  794
      |||||| |||||||||||| |||||   |||| |||||||||||||||||
seq2  CCTGTCTTTGTCTTCTAGT-CCTGAATATCATGGGGGACCCATCTAGCTA  796

seq1  TAACCATGTGTTCGAGCCAGTTCACTGTATTGTC-TCAAGG-ATGTGT  840
      | || |||||||| |||||| ||||||||||||| |||||| ||||||
seq2  T-ACAATGTGTTCAAGCCAG-TCACTGTATTGTCTTCAAGGAATGTGT  842