BAC Information

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BAC

Clone NameB6Ng01-218P06
Chromosome3 (Build37)
Map Location 67,799,831 - 68,008,033
singlet/doubletdoublet
Overlap geneEG208426
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218P06.bB6Ng01-218P06.g
ACCGA034939GA034940
length1,1471,176
definitionB6Ng01-218P06.b B6Ng01-218P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,006,867 - 68,008,033)(67,799,831 - 67,800,903)
sequence
gaattcagggcactctattagcacagggagggcaagggcacatctaaatg
aagtaaagcaattcattgaactggaaaccttgaactgttcattaaaaaac
gagtctcttcctgccaataagaaagacggaaaagctcactctaagagact
ctgattctctgatcatcagaggcacattcttcctcactcgcaatgctaca
gaggcctgagatcccacacggtttcgctgcatatttccctttttgttttg
accacagaggtgtgttctaacacaccctgaatccttccctcctctctctc
tcttctcctctcaatctttttttttccccatcatttccatcccacagaca
gcaccttccttctaagattggtaagcctaatcagtttctacaagattaaa
ccaagaaccacggctatgtcttgcttaaagctaacacctctgtggctttg
gacaaatcaccctgaaccaatagcagtttgaaatgtagctatctacataa
cgaatgaaatacttaaatttcttttagtatccatgtacttatttcttact
ttattaaatggaaaaatgtcaggcaaagtgccttttcttttccaagtagt
gaaaccatcttgagaagtactataatagagggctgaaaagaattcttact
cctattattaaagtatttttcttcattattgtaatgtctttgggcctgtt
ggcatcccaagcttcatttgcaaagacacaattaaatgactattgacgtc
atttttctgtgtctgtaataaaaaggggaggacagagaggagcagaactt
tgctccttgccaaggaaacctccacttttcttcaacatttattatcaggc
ctcctgctggagtttactgccttgcaatggctttgggttcagcttgcagg
cttgcgttcttatccaagatctacacaccgttttacaaaggagtcaggag
aggtacattagattaaatattgatttagctgtaaatccatctctacattt
gggcaaagcagacgccatcaggttacagcagtagctggctcatggatgat
taagcatgtgtgcagaatcaggcacctgattaccagagtcgatctctggc
actgcagtgagaacgcacaagacactgtgctggactgttggtctttc
gaattcattattgctttgtagcactgaggaactcaggtcaactttccctg
cctccccaacccaggccacgccagacattgcaatacagtgtttggtcttt
aagtgtgggaaacccattgctacttttcagtatcaaaacttaggtaaaca
aaccatgctgtgttctgtgcactccagtttgtaagcaatggtccagggaa
ggttgttttctcctttctgcattctgactctctggttgagctgtaaatgc
cctaagaccatggattttgcaagtaggtcttgtaaattctaatagaaagt
gctctccagcaagctctgaaatgagcattatcctattaaacaaagaccgt
gtggcagaaacagagatgttctctcagtggttatgagctaactagatgga
ctgtgaaattttaatcaagtagaaaaacatgcataccatgttcttctctg
caccaacatttctccataaaaacgagacgctctgagtctcaacaactgga
aagagggaaggagaaaatagcagcatctagcattactgaccatctagtgt
atgcaagtcatgccataaatactataagcagcccattcctgttggcttgg
caggagtttcagtgatgggcaatttacttcctatgggtatgtttccatat
aagcaacagacctgaccagggactgttagttttgccaatcacacattagt
gattagttctaaggtaaatgtctcaaaataatcttttccttgagaatgtt
tctaattaagggtaaggggtttcgatcaatagtagagggtaggcttagct
atccatcagggcctgggttcatttcagtagtgaagaggtaaggataaaac
aactcaccagagactataaaaatagttataactagaaataagggttcaag
tacatcgggtgtggaatgctcacatccatccctttcttattgcatttctc
tttctaatggaaggagggtgagacgtttgagtggatgctataatattttc
aatgatcccgaggaaaatgaaaaggagtcatagatagtaaatctacaagt
tagagtcctagctctaggaaacctctgacttcttcacacagttaaacgga
gccaggtgggtaattcgaccttcagaacttctggatgtggtcgagcacca
gaaagcatatcgaggtcagacttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68006867_68008033
seq2: B6Ng01-218P06.b_47_1193 (reverse)

seq1  GAAAGAGCAACAGTCAAAGCACAGTTTGTCTTTGTGCG-TCTCACTGCAG  49
      |||||| ||||||||  |||||||  |||| ||||||| |||||||||||
seq2  GAAAGACCAACAGTC-CAGCACAG--TGTC-TTGTGCGTTCTCACTGCAG  46

seq1  TGCCAGAGATCGACCTTCTGGGTATCAGGTGCCCTTGATTCTGCCACACC  99
      ||||||||||||||  |||||  ||||||||||  |||||||| |||| |
seq2  TGCCAGAGATCGAC--TCTGGTAATCAGGTGCC--TGATTCTG-CACA-C  90

seq1  CTGCTTTAATCATCCATGAGCCCAGCCTTACCTGCTGGTAACCTGATGGC  149
       ||| ||||||||||||||| |||||  || ||||| |||||||||||| 
seq2  ATGC-TTAATCATCCATGAG-CCAGC--TA-CTGCT-GTAACCTGATGG-  133

seq1  CTTCTGCTTTGCCCAAATGTTAGAAGGATGGATTTACAGCTAAATCAATA  199
      | ||||||||||||||||| ||||  ||||||||||||||||||||||||
seq2  CGTCTGCTTTGCCCAAATG-TAGA--GATGGATTTACAGCTAAATCAATA  180

seq1  TTTAATCTAATGTACCTCTCCTGACTCCTTTTGTAAAACGGTGTGTAGAT  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAATCTAATGTACCTCTCCTGACTCC-TTTGTAAAACGGTGTGTAGAT  229

seq1  CTTGGATAAGAACGCAAGCCTGCAAGCTGAA-CCAAAGCCATTTGCAAGG  298
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  CTTGGATAAGAACGCAAGCCTGCAAGCTGAACCCAAAGCCA-TTGCAAGG  278

seq1  CAGTAAACTCCAGCAGGAGGCCTGATAATAAATGTTGAAGAAAAGTGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACTCCAGCAGGAGGCCTGATAATAAATGTTGAAGAAAAGTGGAG  328

seq1  GTTTCCTTGGCAAGGAGCAAAGTTCTGCTCCTCTCTGTCCTCCCCTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTGGCAAGGAGCAAAGTTCTGCTCCTCTCTGTCCTCCCCTTTTT  378

seq1  ATTACAGACACAGAAAAATGACGTCAATAGTCATTTAATTGTGTCTTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGACACAGAAAAATGACGTCAATAGTCATTTAATTGTGTCTTTGC  428

seq1  AAATGAAGCTTGGGATGCCAACAGGCCCAAAGACATTACAATAATGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCTTGGGATGCCAACAGGCCCAAAGACATTACAATAATGAAGA  478

seq1  AAAATACTTTAATAATAGGAGTAAGAATTCTTTTCAGCCCTCTATTATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTAATAATAGGAGTAAGAATTCTTTTCAGCCCTCTATTATAG  528

seq1  TACTTCTCAAGATGGTTTCACTACTTGGAAAAGAAAAGGCACTTTGCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCAAGATGGTTTCACTACTTGGAAAAGAAAAGGCACTTTGCCTG  578

seq1  ACATTTTTCCATTTAATAAAGTAAGAAATAAGTACATGGATACTAAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCCATTTAATAAAGTAAGAAATAAGTACATGGATACTAAAAGA  628

seq1  AATTTAAGTATTTCATTCGTTATGTAGATAGCTACATTTCAAACTGCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTATTTCATTCGTTATGTAGATAGCTACATTTCAAACTGCTAT  678

seq1  TGGTTCAGGGTGATTTGTCCAAAGCCACAGAGGTGTTAGCTTTAAGCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGGGTGATTTGTCCAAAGCCACAGAGGTGTTAGCTTTAAGCAAG  728

seq1  ACATAGCCGTGGTTCTTGGTTTAATCTTGTAGAAACTGATTAGGCTTACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCGTGGTTCTTGGTTTAATCTTGTAGAAACTGATTAGGCTTACC  778

seq1  AATCTTAGAAGGAAGGTGCTGTCTGTGGGATGGAAATGATGGGGAAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGAAGGAAGGTGCTGTCTGTGGGATGGAAATGATGGGGAAAAAA  828

seq1  AAAGATTGAGAGGAGAAGAGAGAGAGAGGAGGGAAGGATTCAGGGTGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGAGAGGAGAAGAGAGAGAGAGGAGGGAAGGATTCAGGGTGTGT  878

seq1  TAGAACACACCTCTGTGGTCAAAACAAAAAGGGAAATATGCAGCGAAACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACACCTCTGTGGTCAAAACAAAAAGGGAAATATGCAGCGAAACC  928

seq1  GTGTGGGATCTCAGGCCTCTGTAGCATTGCGAGTGAGGAAGAATGTGCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGATCTCAGGCCTCTGTAGCATTGCGAGTGAGGAAGAATGTGCCT  978

seq1  CTGATGATCAGAGAATCAGAGTCTCTTAGAGTGAGCTTTTCCGTCTTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATCAGAGAATCAGAGTCTCTTAGAGTGAGCTTTTCCGTCTTTCT  1028

seq1  TATTGGCAGGAAGAGACTCGTTTTTTAATGAACAGTTCAAGGTTTCCAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCAGGAAGAGACTCGTTTTTTAATGAACAGTTCAAGGTTTCCAGT  1078

seq1  TCAATGAATTGCTTTACTTCATTTAGATGTGCCCTTGCCCTCCCTGTGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATTGCTTTACTTCATTTAGATGTGCCCTTGCCCTCCCTGTGCT  1128

seq1  AATAGAGTGCCCTGAATTC  1167
      |||||||||||||||||||
seq2  AATAGAGTGCCCTGAATTC  1147

seq1: chr3_67799831_67800903
seq2: B6Ng01-218P06.g_68_1243

seq1  GAATTCATTATTGCTTTGTAGCACTGAGGAACTCAGGTCAACTTTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTGCTTTGTAGCACTGAGGAACTCAGGTCAACTTTCCCTG  50

seq1  CCTCCCCAACCCAGGCCACGCCAGACATTGCAATACAGTGTTTGGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAACCCAGGCCACGCCAGACATTGCAATACAGTGTTTGGTCTTT  100

seq1  AAGTGTGGGAAACCCATTGCTACTTTTCAGTATCAAAACTTAGGTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGAAACCCATTGCTACTTTTCAGTATCAAAACTTAGGTAAACA  150

seq1  AACCATGCTGTGTTCTGTGCACTCCAGTTTGTAAGCAATGGTCCAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCTGTGTTCTGTGCACTCCAGTTTGTAAGCAATGGTCCAGGGAA  200

seq1  GGTTGTTTTCTCCTTTCTGCATTCTGACTCTCTGGTTGAGCTGTAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTCTCCTTTCTGCATTCTGACTCTCTGGTTGAGCTGTAAATGC  250

seq1  CCTAAGACCATGGATTTTGCAAGTAGGTCTTGTAAATTCTAATAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCATGGATTTTGCAAGTAGGTCTTGTAAATTCTAATAGAAAGT  300

seq1  GCTCTCCAGCAAGCTCTGAAATGAGCATTATCCTATTAAACAAAGACCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAGCAAGCTCTGAAATGAGCATTATCCTATTAAACAAAGACCGT  350

seq1  GTGGCAGAAACAGAGATGTTCTCTCAGTGGTTATGAGCTAACTAGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAAACAGAGATGTTCTCTCAGTGGTTATGAGCTAACTAGATGGA  400

seq1  CTGTGAAATTTTAATCAAGTAGAAAAACATGCATACCATGTTCTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATTTTAATCAAGTAGAAAAACATGCATACCATGTTCTTCTCTG  450

seq1  CACCAACATTTCTCCATAAAAACGAGACGCTCTGAGTCTCAACAACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACATTTCTCCATAAAAACGAGACGCTCTGAGTCTCAACAACTGGA  500

seq1  AAGAGGGAAGGAGAAAATAGCAGCATCTAGCATTACTGACCATCTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAAGGAGAAAATAGCAGCATCTAGCATTACTGACCATCTAGTGT  550

seq1  ATGCAAGTCATGCCATAAATACTATAAGCAGCCCATTCCTGTTGGCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTCATGCCATAAATACTATAAGCAGCCCATTCCTGTTGGCTTGG  600

seq1  CAGGAGTTTCAGTGATGGGCAATTTACTTCCTATGGGTATGTTTCCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTCAGTGATGGGCAATTTACTTCCTATGGGTATGTTTCCATAT  650

seq1  AAGCAACAGACCTGACCAGGGACTGTTAGTTTTGCCAATCACACATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAGACCTGACCAGGGACTGTTAGTTTTGCCAATCACACATTAGT  700

seq1  GATTAGTTCTAAGGTAAATGTCTCAAAATAATCTTTTCCTTGAGAATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTCTAAGGTAAATGTCTCAAAATAATCTTTTCCTTGAGAATGTT  750

seq1  TCTAATTAAGGGTAA-GGGTTTCGATCAATAGTAGAGGGTAGGCTTAGCT  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTAATTAAGGGTAAGGGGTTTCGATCAATAGTAGAGGGTAGGCTTAGCT  800

seq1  ATCCATCAGGGCCTGGGTTCA-TTCAGTAGTGAAGAGGTAAGGATAAAAC  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCCATCAGGGCCTGGGTTCATTTCAGTAGTGAAGAGGTAAGGATAAAAC  850

seq1  AACTCACCAGAGACTATAAAAATAGTTATAACTAGAAATAA-GGTTCAAG  897
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACTCACCAGAGACTATAAAAATAGTTATAACTAGAAATAAGGGTTCAAG  900

seq1  TACATC-GGTGTGGAATGCTCACATCCAT-CCTTTC-TATTGCATTTCTC  944
      |||||| |||||||||||||||||||||| |||||| |||||||||||||
seq2  TACATCGGGTGTGGAATGCTCACATCCATCCCTTTCTTATTGCATTTCTC  950

seq1  TTTCTAAT-GAAGGA-GGTGAGACG-TTGAGT-GATGCTATAATAATTTC  990
      |||||||| |||||| ||||||||| |||||| |||||||||||| ||||
seq2  TTTCTAATGGAAGGAGGGTGAGACGTTTGAGTGGATGCTATAATATTTTC  1000

seq1  AATGATCCAGA-GAAAATGAAAAAGAAGTCATAGATAGTAAAATCTACAA  1039
      |||||||| || ||||||| ||||| ||||||||||||| ||||||||||
seq2  AATGATCCCGAGGAAAATG-AAAAGGAGTCATAGATAGT-AAATCTACAA  1048

seq1  G-TAGAGTCCTAGCTCTA-GAAACCTCAGACTTCTC--------------  1073
      | |||||||||||||||| |||||||| |||||||               
seq2  GTTAGAGTCCTAGCTCTAGGAAACCTCTGACTTCT-TCACACAGTTAAAC  1097

seq1  --------------------------------------------------  1073
                                                        
seq2  GGAGCCAGGTGGGTAATTCGACCTTCAGAACTTCTGGATGTGGTCGAGCA  1147

seq1  -----------------------------  1073
                                   
seq2  CCAGAAAGCATATCGAGGTCAGACTTCTC  1176