BAC Information

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BAC

Clone NameB6Ng01-219B16
Chromosome3 (Build37)
Map Location 25,261,487 - 25,382,976
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219B16.bB6Ng01-219B16.g
ACCGA035047GA035048
length1,174995
definitionB6Ng01-219B16.b B6Ng01-219B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,261,487 - 25,262,661)(25,381,958 - 25,382,976)
sequence
gaattcatgtgcttgagcatcacttatttccatcaacacttagagacatt
tggtgtcatattatgtcaccttaaaaatcataaagagtttaggacaaaaa
aaaagccaaacctgtcactagaaaaaaatactggttatctgctggtacat
gcttgaaattttgctcagataaaagctaaatcatctgagatgttccatgt
ctgtattgtgtcttagacaaaatctaaaatgttgaatattgcaattgccc
agtatttcattaaggactgaaggcaataatggcattcataaaatcttgtg
ataaataactgctctatcacttcacaaaaatctgcactgggttctctttt
gccaattattttgttttttaaatgttgcatgaagaaaatttctatgctta
ctttctatcatttctggttttgtttttgaatttgagaattagctataatg
ctttcagatactttgattcataatttattgcttaattatgttataatatt
tatgaagtattaaaaaaaccaaaatttcataacctaggtctctgaagtgt
tgcctgttacatacaccacacctaaaagacaaaagcatgcctacttcctt
aatcttaccaacacaaaatatatatacctcaatgtgataatgagcataca
cacacacacagacacacacaccaccccacacacaaaatgcactgacgctg
cttctgagacatagttccagtcaagagctgggtttccaagttctttttct
attgtttatatttaaaaaatgacctcactcacctgtctagcttagtgcca
gtcttctgccttcctcatcaccatgtcctagtccccagcttggcctgaga
tgccctattcaatcaaaggccactctgaccaaaacaagtacaggtatttt
actcttacttggacctcccctaacctctcaatgtccctccactacctcta
caacttattccagttcccctctcatctgcatcagtcaccagtgatgtggg
aaagggagacatccatcgtaccttaacctgtgtctcattcctgctcagta
tgctgaaagggacacacatgtatgtgaggtggcctgaatattcttccatt
ttagtaagttactagaagagaaatattcagactattttaagaaaacatgg
aacttatgtattcaagaaatcata

gaattcactatcagacctgacacagagcaggagaatagaacattttgttt
aagtgagacatggaactgaaataaaataaaaacagaaaatgagtatggtc
aatgaatgtttcttttctctttctttctttctttctttctttctttcttc
cttccttccttccttccttcctttctctctctctctctctctctttcttt
ctttctttctttctttctttgttcctttttttttgctagatatcaataag
tatagaaggcaggcaccaggtattagatagatgaaagcaggggtgagggg
aatgggagaagaatgaagtcaatagaaaactttactgagaatggtgcaca
ccttgaagtagcataacttcattggcaaatagaatgatggtgtcacccaa
gtttgaaaagcacatcagaagtagccgaacagattccttactcttagagg
ctgagacagagcattggtcacttgtctctgcctgggatcgagtgagcata
ttttggtgtgaaaatctctatcctgtagaaatcatagtaagagaaaatac
aagttttaccaggtctttgatacatccagacagctgcacagaagggccaa
ggcagactgctgaatctaaatcagaagcaaggtctccagtgagttgcatc
tgtgaaacccacttttccgtgcttctgagctacaaaccagatttgctgct
tctcttcctgtctgcaactggaatcataaccagtgattagatccttctgt
gcaccatacatttacaaagcacccgtgatgacaaagagcagacatgacgg
tgttctctgaaaagtagtaaattgacagtgtgatcaaaacacatctctga
aaagtgtgaactgactgtgtgatgcagcgtgtctgtctgagatgcatata
ctatcgtgcatctttcatgtacatttgatactcgatgcatctatacgatg
catgatcatcttctagtaaacatgatgcagtgtcatgtaccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25261487_25262661
seq2: B6Ng01-219B16.b_46_1219

seq1  GAATTCATGTGCTTGAGCATCACTTATTTCCATCAACACTTAGAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGCTTGAGCATCACTTATTTCCATCAACACTTAGAGACATT  50

seq1  TGGTGTCATATTATGTCACCTTAAAAATCATAAAGAGTTTAGGACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCATATTATGTCACCTTAAAAATCATAAAGAGTTTAGGACAAAAA  100

seq1  AAAAGCCAAACCTGTCACTAGAAAAAAATACTGGTTATCTGCTGGTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAACCTGTCACTAGAAAAAAATACTGGTTATCTGCTGGTACAT  150

seq1  GCTTGAAATTTTGCTCAGATAAAAGCTAAATCATCTGAGATGTTCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATTTTGCTCAGATAAAAGCTAAATCATCTGAGATGTTCCATGT  200

seq1  CTGTATTGTGTCTTAGACAAAATCTAAAATGTTGAATATTGCAATTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTGTCTTAGACAAAATCTAAAATGTTGAATATTGCAATTGCCC  250

seq1  AGTATTTCATTAAGGACTGAAGGCAATAATGGCATTCATAAAATCTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCATTAAGGACTGAAGGCAATAATGGCATTCATAAAATCTTGTG  300

seq1  ATAAATAACTGCTCTATCACTTCACAAAAATCTGCACTGGGTTCTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACTGCTCTATCACTTCACAAAAATCTGCACTGGGTTCTCTTTT  350

seq1  GCCAATTATTTTGTTTTTTAAATGTTGCATGAAGAAAATTTCTATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTATTTTGTTTTTTAAATGTTGCATGAAGAAAATTTCTATGCTTA  400

seq1  CTTTCTATCATTTCTGGTTTTGTTTTTGAATTTGAGAATTAGCTATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCATTTCTGGTTTTGTTTTTGAATTTGAGAATTAGCTATAATG  450

seq1  CTTTCAGATACTTTGATTCATAATTTATTGCTTAATTATGTTATAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATACTTTGATTCATAATTTATTGCTTAATTATGTTATAATATT  500

seq1  TATGAAGTATTAAAAAAACCAAAATTTCATAACCTAGGTCTCTGAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTATTAAAAAAACCAAAATTTCATAACCTAGGTCTCTGAAGTGT  550

seq1  TGCCTGTTACATACACCACACCTAAAAGACAAAAGCATGCCTACTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTACATACACCACACCTAAAAGACAAAAGCATGCCTACTTCCTT  600

seq1  AATCTTACCAACACAAAATATATATACCTCAATGTGATAATGAGCATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACCAACACAAAATATATATACCTCAATGTGATAATGAGCATACA  650

seq1  CACACACACAGACACACACACCACCCCACACACAAAATGCACTGACGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGACACACACACCACCCCACACACAAAATGCACTGACGCTG  700

seq1  CTTCTGAGACATAGTTCCAGTCAAGAGCTGGGTTTCCAAGTTCTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGACATAGTTCCAGTCAAGAGCTGGGTTTCCAAGTTCTTTTTCT  750

seq1  ATTGTTTATATTTAAAAAATGACCTCACTCACCTGTCTAGCTTAGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATATTTAAAAAATGACCTCACTCACCTGTCTAGCTTAGTGCCA  800

seq1  GTCTTCTGCCTTCCTCATCACCATGTCCTAGTCCCCAGCTTGGCCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCCTTCCTCATCACCATGTCCTAGTCCCCAGCTTGGCCTGAGA  850

seq1  TGCCCTATTCAATCAAAGGCCACTCTGACCAAAACAAGTACAGGTATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATTCAATCAAAGGCCACTCTGACCAAAACAAGTACAGGTATTTT  900

seq1  ACTCTTACTTGGACCTCCCCTAACCTCTCAATGTCCCTCCACTACCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACTTGGACCTCCCCTAACCTCTCAATGTCCCTCCACTACCTCTA  950

seq1  CAACTTATTCCAGTTCCCCTCTCATCTGCATCAGTCACCAGTGATGTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTCCAGTTCCCCTCTCATCTGCATCAGTCACCAGTGATGTGGG  1000

seq1  AAAGGGAGACATCCATCGTACCTTAACCTGTGTCTCATTCCTGCTCAGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGACATCCATCGTACCTTAACCTGTGTCTCATTCCTGCTCAGTA  1050

seq1  TGCTGAAAGGGACACACATGTATGTTGAGTGGCCTG-ATA-TCTTCCATT  1098
      |||||||||||||||||||||||||   |||||||| ||| |||||||||
seq2  TGCTGAAAGGGACACACATGTATGTGAGGTGGCCTGAATATTCTTCCATT  1100

seq1  TTAGTAAGTTACTTAAGAAGAG-AATATTCAGGACTATTTTAAG-AAACA  1146
      |||||||||||||  ||||||| |||||||| |||||||||||| |||||
seq2  TTAGTAAGTTACT--AGAAGAGAAATATTCA-GACTATTTTAAGAAAACA  1147

seq1  TGGGACTTATGTAATTTCAAAGAATCATA  1175
      ||| |||||||||  |||||  |||||||
seq2  TGGAACTTATGTA--TTCAAGAAATCATA  1174


seq1: chr3_25381958_25382976
seq2: B6Ng01-219B16.g_67_1061 (reverse)

seq1  AAGTGGTACACTGGACAACTGCATCATGTTTTAACTAGGAAGATGGATCA  50
      ||||||||||   ||| ||||||||||||||  |||| |||||| |||| 
seq2  AAGTGGTACA--TGAC-ACTGCATCATGTTT--ACTA-GAAGAT-GATC-  42

seq1  ATGCATCGTTATAGATGCTATCCGAGGTAATCAAATGTACAATGAAAGAA  100
      |||||||| ||||||||| || ||||   ||||||||||| ||||||| |
seq2  ATGCATCG-TATAGATGC-AT-CGAG--TATCAAATGTAC-ATGAAAG-A  85

seq1  TGCCACCGAATAGTTATATGCATCTCAGACAGACACGCTTGCAATCACAC  150
      || |||   |||| |||||||||||||||||||||||| ||| |||||||
seq2  TG-CAC--GATAG-TATATGCATCTCAGACAGACACGC-TGC-ATCACAC  129

seq1  AGTCAGTTCACAACTTTTCAGAGATGTGTTTTTGATCACACTGTCAATTT  200
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AGTCAGTTCAC-ACTTTTCAGAGATGTG-TTTTGATCACACTGTCAATTT  177

seq1  ACTACTTTTCAGAGAACACCGTCATGTCTGCTCTTTGTCATCACGGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTCAGAGAACACCGTCATGTCTGCTCTTTGTCATCACGGGTGC  227

seq1  TTTTGTAAATGTATGGTGCACAGAAGGATCTAATCACTGGTTATGATTCC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGTAAATGTATGGTGCACAGAAGGATCTAATCACTGGTTATGATTCC  276

seq1  AGTTGCAGACAGGAAGAGAAGCAGCAAATCTGGTTTGTAGCTCAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGACAGGAAGAGAAGCAGCAAATCTGGTTTGTAGCTCAGAAGCA  326

seq1  CGGAAAAGTGGGTTTCACAGATGCAACTCACTGGAGACCTTGCTTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAGTGGGTTTCACAGATGCAACTCACTGGAGACCTTGCTTCTGAT  376

seq1  TTAGATTCAGCAGTCTGCCTTGGCCCTTCTGTGCAGCTGTCTGGATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCAGCAGTCTGCCTTGGCCCTTCTGTGCAGCTGTCTGGATGTAT  426

seq1  CAAAGACCTGGTAAAACTTGTATTTTCTCTTACTATGATTTCTACAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCTGGTAAAACTTGTATTTTCTCTTACTATGATTTCTACAGGAT  476

seq1  AGAGATTTTCACACCAAAATATGCTCACTCGATCCCAGGCAGAGACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTTCACACCAAAATATGCTCACTCGATCCCAGGCAGAGACAAGT  526

seq1  GACCAATGCTCTGTCTCAGCCTCTAAGAGTAAGGAATCTGTTCGGCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCTCTGTCTCAGCCTCTAAGAGTAAGGAATCTGTTCGGCTACT  576

seq1  TCTGATGTGCTTTTCAAACTTGGGTGACACCATCATTCTATTTGCCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGCTTTTCAAACTTGGGTGACACCATCATTCTATTTGCCAATG  626

seq1  AAGTTATGCTACTTCAAGGTGTGCACCATTCTCAGTAAAGTTTTCTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCTACTTCAAGGTGTGCACCATTCTCAGTAAAGTTTTCTATTG  676

seq1  ACTTCATTCTTCTCCCATTCCCCTCACCCCTGCTTTCATCTATCTAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTTCTCCCATTCCCCTCACCCCTGCTTTCATCTATCTAATAC  726

seq1  CTGGTGCCTGCCTTCTATACTTATTGATATCTAGCAAAAAAAAAGGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCTGCCTTCTATACTTATTGATATCTAGCAAAAAAAAAGGAACA  776

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAAAGG  826

seq1  AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  876

seq1  GAGAAAAGAAACATTCATTGACCATACTCATTTTCTGTTTTTATTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAAACATTCATTGACCATACTCATTTTCTGTTTTTATTTTATT  926

seq1  TCAGTTCCATGTCTCACTTAAACAAAATGTTCTATTCTCCTGCTCTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCATGTCTCACTTAAACAAAATGTTCTATTCTCCTGCTCTGTGT  976

seq1  CAGGTCTGATAGTGAATTC  1019
      |||||||||||||||||||
seq2  CAGGTCTGATAGTGAATTC  995


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