BAC Information

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BAC

Clone NameB6Ng01-219C20
Chromosome3 (Build37)
Map Location 55,588,642 - 55,589,832
singlet/doubletsinglet
Overlap geneMab21l1
Upstream geneSmad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
Downstream gene4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219C20.bB6Ng01-219C20.g
ACCGA035098GA035099
length1,1931,170
definitionB6Ng01-219C20.b B6Ng01-219C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcttatataataacgcttgaatatctgaattatatatatattt
gaaaatgcacttgaaaatacactggataattacttttgtgatttagaatt
taatttctgttgctgatttttatttaattagaagataataaatgaagtaa
aataccaagtttctgtttctctttaaattgttgttgttgttgttaaatga
ggtaatgatgctatttaaaagtcaacttgagaattttaaacatttcgaca
aacaggttaataaaatcactaaaattaaatgttaaaagggctctttttag
aacagctatagaaaatatccacttccccagtttctaatttactcaatggt
tcttttctacaatgaatatatttatagcctacttctgagactttgattct
ggttagtatttctgtagtcgtttgacaatataagggaaaaattaccatag
caatagagaagactgagtttaaaagcagcaaaatctgagaaaaattaact
taaaccataatgcaaaactctgaagtttttatatgaaatataagcaataa
aatggagatatattttaacacaataagtgttattagaataaattaaccag
aaaccacaactcattcttactatacagggaaagctaatggcaaaacctaa
aggcaagcccttacttatttaaacacagcacattcattgtctcattacag
aagctttggtggtatctcaccgatcaacaagtgctgagagggtccagacc
gaggctttacattagctaattcaggtagcaataaagtttagaattatctt
tgcccatttacaaataatgttctatataatgtgtcatttctgcatatagc
ttaaatataaagaataaaattcaagtctgactatcttagaactgcttttg
aaacgatttaaaggaagatcttttgaaaatgattgtaaaatatccagtat
tacatcccatatgtcaaccaagacctcagaagaaatttacagacactaca
gttccataaataagaaacatggagtacatctcaaatggctgttggccagt
ggggcttctctgatggtcaaggttagaatccacaagataagatctagtca
catgtttgcccattcccaatgctccaggtgtgctgccccttttagaattg
gcaattcgagtgcctaagtgtgccttgggtgtatacatttaaa

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaagtggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgcgactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaagagcttaaggggtcttcacccctat
agtgaacacattatgactacagtaccccttgagctctgactctagctgca
tatgttatcaaagatgctagtcgtcattcactgaaagaagtcaatgaaca
cgcgacctttggttcctagtacaggatcgcgaggctaagggggcaattga
ctgactacgctaacatctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55588642_55589832
seq2: B6Ng01-219C20.b_46_1238

seq1  GAATTCAGCTTATATAATAACGCTTGAATATCTGAATTATATATATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTATATAATAACGCTTGAATATCTGAATTATATATATATTT  50

seq1  GAAAATGCACTTGAAAATACACTGGATAATTACTTTTGTGATTTAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCACTTGAAAATACACTGGATAATTACTTTTGTGATTTAGAATT  100

seq1  TAATTTCTGTTGCTGATTTTTATTTAATTAGAAGATAATAAATGAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGTTGCTGATTTTTATTTAATTAGAAGATAATAAATGAAGTAA  150

seq1  AATACCAAGTTTCTGTTTCTCTTTAAATTGTTGTTGTTGTTGTTAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAGTTTCTGTTTCTCTTTAAATTGTTGTTGTTGTTGTTAAATGA  200

seq1  GGTAATGATGCTATTTAAAAGTCAACTTGAGAATTTTAAACATTTCGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATGCTATTTAAAAGTCAACTTGAGAATTTTAAACATTTCGACA  250

seq1  AACAGGTTAATAAAATCACTAAAATTAAATGTTAAAAGGGCTCTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTAATAAAATCACTAAAATTAAATGTTAAAAGGGCTCTTTTTAG  300

seq1  AACAGCTATAGAAAATATCCACTTCCCCAGTTTCTAATTTACTCAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTATAGAAAATATCCACTTCCCCAGTTTCTAATTTACTCAATGGT  350

seq1  TCTTTTCTACAATGAATATATTTATAGCCTACTTCTGAGACTTTGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTACAATGAATATATTTATAGCCTACTTCTGAGACTTTGATTCT  400

seq1  GGTTAGTATTTCTGTAGTCGTTTGACAATATAAGGGAAAAATTACCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTATTTCTGTAGTCGTTTGACAATATAAGGGAAAAATTACCATAG  450

seq1  CAATAGAGAAGACTGAGTTTAAAAGCAGCAAAATCTGAGAAAAATTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGAAGACTGAGTTTAAAAGCAGCAAAATCTGAGAAAAATTAACT  500

seq1  TAAACCATAATGCAAAACTCTGAAGTTTTTATATGAAATATAAGCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATAATGCAAAACTCTGAAGTTTTTATATGAAATATAAGCAATAA  550

seq1  AATGGAGATATATTTTAACACAATAAGTGTTATTAGAATAAATTAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGATATATTTTAACACAATAAGTGTTATTAGAATAAATTAACCAG  600

seq1  AAACCACAACTCATTCTTACTATACAGGGAAAGCTAATGGCAAAACCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAACTCATTCTTACTATACAGGGAAAGCTAATGGCAAAACCTAA  650

seq1  AGGCAAGCCCTTACTTATTTAAACACAGCACATTCATTGTCTCATTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCCTTACTTATTTAAACACAGCACATTCATTGTCTCATTACAG  700

seq1  AAGCTTTGGTGGTATCTCACCGATCAACAAGTGCTGAGAGGGTCCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGGTGGTATCTCACCGATCAACAAGTGCTGAGAGGGTCCAGACC  750

seq1  GAGGCTTTACATTAGCTAATTCAGGTAGCAATAAAGTTTAGAATTATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTACATTAGCTAATTCAGGTAGCAATAAAGTTTAGAATTATCTT  800

seq1  TGCCCATTTACAAATAATGTTCTATATAATGTGTCATTTCTGCATATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTACAAATAATGTTCTATATAATGTGTCATTTCTGCATATAGC  850

seq1  TTAAATATAAAGAATAAAATTCAAGTCTGACTATCTTAGAACTGCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATAAAGAATAAAATTCAAGTCTGACTATCTTAGAACTGCTTTTG  900

seq1  AAACGATTTAAAGGAAGATC-TTTGAAAATGATTGTAAAATATCCAGTAT  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACGATTTAAAGGAAGATCTTTTGAAAATGATTGTAAAATATCCAGTAT  950

seq1  TACATCCCATATGTCAACCAAGACCTCAGAAGAAATTTACAGACACTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCATATGTCAACCAAGACCTCAGAAGAAATTTACAGACACTACA  1000

seq1  GTTCCATAAATAAGAAAACAATGGAGTACATCTCAAATGGCTGTTGGGCC  1049
      |||||||||||||||||   ||||||||||||||||||||||||| ||||
seq2  GTTCCATAAATAAGAAA--CATGGAGTACATCTCAAATGGCTGTT-GGCC  1047

seq1  AGTGGGGCTTCTCTGATGGTCAAGGTTAGAATCCACAAGATAAGATCTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCTTCTCTGATGGTCAAGGTTAGAATCCACAAGATAAGATCTAG  1097

seq1  TCACCATGTTTG-CCATT-CCAATGCTCCAAGTGTGCCTGCCCCTTTTAG  1147
      ||| |||||||| ||||| ||||||||||| ||||| |||||||||||||
seq2  TCA-CATGTTTGCCCATTCCCAATGCTCCAGGTGTG-CTGCCCCTTTTAG  1145

seq1  AA-TGGC-ATCCGAGTGC--TAGTGTGTGCTGTGTGTATACATTTAAA  1191
      || |||| || |||||||   ||||||   || |||||||||||||||
seq2  AATTGGCAATTCGAGTGCCTAAGTGTGCCTTGGGTGTATACATTTAAA  1193


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