BAC Information

Click to search

BAC

Clone NameB6Ng01-219F21
Chromosome3 (Build37)
Map Location 94,507,651 - 94,616,389
singlet/doubletdoublet
Overlap geneSelenbp2, LOC100042801, Cgn
Upstream geneLOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767
Downstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219F21.bB6Ng01-219F21.g
ACCGA035224GA035225
length1,097713
definitionB6Ng01-219F21.b B6Ng01-219F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,615,235 - 94,616,389)(94,507,651 - 94,508,363)
sequence
gaattcagaaatgagaaaagtcgggataagggttcagatttgtactaaca
ggtgtggggtgacctggtaaagaatgcaacggatccagtgaaactaaaca
acgggcaggggtagatgggaggacccatcttggaggaaaacaagcaaaag
cgcagacgcagagaagagcagggctcagacatgcatagcaggcggtgagc
agcgagaggagataaacacagtgggaatggagagctcgcctatacgtgaa
agtcctaagacgagacctgattgcatgagatgttgcaagctggagctgat
aaaccggtgatggggaactgctgagactttccagaggtaaacagcccaat
ggaaatggggtttaggaagagccgactggaagtagctctcctgaaaagaa
cagaaaagaagagaagggagggctactgttacactagacatacaggacag
gggacgaatttgataaatgcatgctttcacacttattttcagaaaataag
gttcacttagagtagaaacatcgaatagcacattaaagtataaaaggaaa
agcagggttggagagatggctcagcacttaagagaactggctaaatttcc
aggggacccttcagctccaggggaccagacgccctcttctggcttctgtg
ggcacactcacaagcatgacttaacactctccctctatctttcacacaca
tatgtgtaaacaaaaaataaaaataaaccggaagtggtggcacacacctt
taatcacagtgctggggagacaggtggatctctgagttcaaggctagttt
ggtctatggagtgagttttaggacagccaggacttcatagagaaacctgt
ctcaacaaaacaaaaacaaaaacaaacaaaaacaaacaacaaacaaaacc
aattgattgaagtagaactttctggttctacaactcagtgtgtcatgtga
tgttttctggaagttgtattgtgaagggcatgcgatgcttgctgaaaaca
gacacttgagcagcacgtgatgtttataagaatataaatggaacccataa
acataaacgaacacctctggaatgctacacctcccatgctcacttcc
gaattcctggaggccctcagatgatccagctcagcttagatggcaagcgt
ctttacgccactacatcactgtacagcgactgggacaagcagttttaccc
tgacctcattaggtgagaagcagtgtgggggctcatttctccaactgtcc
tctcccacaagcatcacttggccttccgaagactcatcaggaactccaac
tgtaccccaccatacagatggcccacggaccctgtcccatccccaggaac
caactatactcacaaaatcttggggtatggggttggctacatacaacttc
tagcttacctcttcttctcttctagggaaggctccgtgatgcttcaagtt
gatgtagacacagtaaatggagggctgaagttgaaccccaactttctggt
ggactttgggaaggagccccttgggccagcactggctcacgagcttcgtt
acccagggggtgactgcagttctgatatctggatctgaaggctcacacta
ggggcccccctccacattctgagcctgcctggcttcactctgctctcagc
cccaactctccaaggccactctgagaccagcgagatctgtagagcagcat
ctctgtaccgttgcttgttgtttgtacttttcttaagtgagctcctggaa
gcacctggaaataaaatgctgaaacttctctcagatcactctgtgatgga
gggggagtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94615235_94616389
seq2: B6Ng01-219F21.b_47_1143 (reverse)

seq1  GGAAGTGAAGACCAGCAAAGACCAGTGAAGACTGGTGAAGAAGTGAAGCA  50
                                             |||||| ||||
seq2  --------------------------------------GGAAGTG-AGCA  11

seq1  TGGGGAGGTGTAGCAATCCAAGAGTGTCCGTTTATTGTTTATGGGGTTTC  100
      | ||||||||||||| ||||   |||| |||||| ||||||| ||||| |
seq2  T-GGGAGGTGTAGCATTCCAGAGGTGTTCGTTTA-TGTTTAT-GGGTTCC  58

seq1  ATTTATATTCTTTATAAACATCACGTGCCTGCTCAAGTGTCTGTTTTCAG  150
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  ATTTATATTC-TTATAAACATCACGTG-CTGCTCAAGTGTCTGTTTTCAG  106

seq1  CAAAGCATCGCATGCCCTTTCACAATACAACTTCCAGAAAAACATCACAT  200
      | ||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  C-AAGCATCGCATGCCC-TTCACAATACAACTTCCAG-AAAACATCACAT  153

seq1  GACACAACTGAGTTGTTAAGAAACCAGAAAGTTCTACTTCAATCAATTGG  250
      ||||| ||||||||||  || |||||||||||||||||||||||||||||
seq2  GACAC-ACTGAGTTGT--AG-AACCAGAAAGTTCTACTTCAATCAATTGG  199

seq1  TTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTG  300
        ||||||||||   | ||||||||||  |||||||||||||||||||||
seq2  --TTTTGTTTGT---TGTTTGTTTTTG--TTTGTTTTTGTTTTTGTTTTG  242

seq1  TTGAGACAGGTTTCTCTATGAAGTCCTGGCTGTCCTAAAACTCACTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGTTTCTCTATGAAGTCCTGGCTGTCCTAAAACTCACTCCAT  292

seq1  AGACCAAACTAGCCTTGAACTCAGAGATCCACCTGTCTCCCCAGCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAACTAGCCTTGAACTCAGAGATCCACCTGTCTCCCCAGCACTGT  342

seq1  GATTAAAGGTGTGTGCCACCACTTCCGGTTTATTTTTATTTTTTGTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGTGCCACCACTTCCGGTTTATTTTTATTTTTTGTTTAC  392

seq1  ACATATGTGTGTGAAAGATAGAGGGAGAGTGTTAAGTCATGCTTGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTGTGAAAGATAGAGGGAGAGTGTTAAGTCATGCTTGTGAGT  442

seq1  GTGCCCACAGAAGCCAGAAGAGGGCGTCTGGTCCCCTGGAGCTGAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAGAAGCCAGAAGAGGGCGTCTGGTCCCCTGGAGCTGAAGGGT  492

seq1  CCCCTGGAAATTTAGCCAGTTCTCTTAAGTGCTGAGCCATCTCTCCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGAAATTTAGCCAGTTCTCTTAAGTGCTGAGCCATCTCTCCAACC  542

seq1  CTGCTTTTCCTTTTATACTTTAATGTGCTATTCGATGTTTCTACTCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCTTTTATACTTTAATGTGCTATTCGATGTTTCTACTCTAAG  592

seq1  TGAACCTTATTTTCTGAAAATAAGTGTGAAAGCATGCATTTATCAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTATTTTCTGAAAATAAGTGTGAAAGCATGCATTTATCAAATTC  642

seq1  GTCCCCTGTCCTGTATGTCTAGTGTAACAGTAGCCCTCCCTTCTCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGTCCTGTATGTCTAGTGTAACAGTAGCCCTCCCTTCTCTTCTT  692

seq1  TTCTGTTCTTTTCAGGAGAGCTACTTCCAGTCGGCTCTTCCTAAACCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTTTCAGGAGAGCTACTTCCAGTCGGCTCTTCCTAAACCCCA  742

seq1  TTTCCATTGGGCTGTTTACCTCTGGAAAGTCTCAGCAGTTCCCCATCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTGGGCTGTTTACCTCTGGAAAGTCTCAGCAGTTCCCCATCACC  792

seq1  GGTTTATCAGCTCCAGCTTGCAACATCTCATGCAATCAGGTCTCGTCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATCAGCTCCAGCTTGCAACATCTCATGCAATCAGGTCTCGTCTTA  842

seq1  GGACTTTCACGTATAGGCGAGCTCTCCATTCCCACTGTGTTTATCTCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCACGTATAGGCGAGCTCTCCATTCCCACTGTGTTTATCTCCTC  892

seq1  TCGCTGCTCACCGCCTGCTATGCATGTCTGAGCCCTGCTCTTCTCTGCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCTCACCGCCTGCTATGCATGTCTGAGCCCTGCTCTTCTCTGCGT  942

seq1  CTGCGCTTTTGCTTGTTTTCCTCCAAGATGGGTCCTCCCATCTACCCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTTTTGCTTGTTTTCCTCCAAGATGGGTCCTCCCATCTACCCCTG  992

seq1  CCCGTTGTTTAGTTTCACTGGATCCGTTGCATTCTTTACCAGGTCACCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGTTTAGTTTCACTGGATCCGTTGCATTCTTTACCAGGTCACCCC  1042

seq1  ACACCTGTTAGTACAAATCTGAACCCTTATCCCGACTTTTCTCATTTCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTTAGTACAAATCTGAACCCTTATCCCGACTTTTCTCATTTCTG  1092

seq1  AATTC  1155
      |||||
seq2  AATTC  1097

seq1: chr3_94507651_94508363
seq2: B6Ng01-219F21.g_65_777

seq1  GAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAAGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAAGCGT  50

seq1  CTTTACGCCACTACATCACTGTACAGCGACTGGGACAAGCAGTTTTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGCCACTACATCACTGTACAGCGACTGGGACAAGCAGTTTTACCC  100

seq1  TGACCTCATTAGGTGAGAAGCAGTGTGGGGGCTCATTTCTCCAACTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTAGGTGAGAAGCAGTGTGGGGGCTCATTTCTCCAACTGTCC  150

seq1  TCTCCCACAAGCATCACTTGGCCTTCCGAAGACTCATCAGGAACTCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACAAGCATCACTTGGCCTTCCGAAGACTCATCAGGAACTCCAAC  200

seq1  TGTACCCCACCATACAGATGGCCCACGGACCCTGTCCCATCCCCAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCCACCATACAGATGGCCCACGGACCCTGTCCCATCCCCAGGAAC  250

seq1  CAACTATACTCACAAAATCTTGGGGTATGGGGTTGGCTACATACAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATACTCACAAAATCTTGGGGTATGGGGTTGGCTACATACAACTTC  300

seq1  TAGCTTACCTCTTCTTCTCTTCTAGGGAAGGCTCCGTGATGCTTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACCTCTTCTTCTCTTCTAGGGAAGGCTCCGTGATGCTTCAAGTT  350

seq1  GATGTAGACACAGTAAATGGAGGGCTGAAGTTGAACCCCAACTTTCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGACACAGTAAATGGAGGGCTGAAGTTGAACCCCAACTTTCTGGT  400

seq1  GGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTT  450

seq1  ACCCAGGGGGTGACTGCAGTTCTGATATCTGGATCTGAAGGCTCACACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGGGTGACTGCAGTTCTGATATCTGGATCTGAAGGCTCACACTA  500

seq1  GGGGCCCCCCTCCACATTCTGAGCCTGCCTGGCTTCACTCTGCTCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCCCCTCCACATTCTGAGCCTGCCTGGCTTCACTCTGCTCTCAGC  550

seq1  CCCAACTCTCCAAGGCCACTCTGAGACCAGCGAGATCTGTAGAGCAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCTCCAAGGCCACTCTGAGACCAGCGAGATCTGTAGAGCAGCAT  600

seq1  CTCTGTACCGTTGCTTGTTGTTTGTACTTTTCTTAAGTGAGCTCCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCGTTGCTTGTTGTTTGTACTTTTCTTAAGTGAGCTCCTGGAA  650

seq1  GCACCTGGAAATAAAATGCTGAAACTTCTCTCAGATCACTCTGTGATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGAAATAAAATGCTGAAACTTCTCTCAGATCACTCTGTGATGGA  700

seq1  GGGGGAGTGGGTT  713
      |||||||||||||
seq2  GGGGGAGTGGGTT  713