BAC Information

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BAC

Clone NameB6Ng01-219K06
Chromosome3 (Build37)
Map Location 68,181,506 - 68,377,161
singlet/doubletdoublet
Overlap geneSchip1
Upstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K06.bB6Ng01-219K06.g
ACCGA035418GA035419
length833947
definitionB6Ng01-219K06.b B6Ng01-219K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,181,506 - 68,182,338)(68,376,215 - 68,377,161)
sequence
gaattcttttgctcattctgaggctgtgacagaattaaattattgatagc
cccctactggcatgaatcaaatacagggtgtttggttacaacagctgaaa
ggtttcttgaatgcgggagcagctgatgatttgacagaaattcaattact
atgactagtctacattagactttggagtcaatttaattattcttcacaag
atttttaaatttcactcttctttaatagcgtgtttcaggagctagagtac
tgctggacaggacactgaaacggtagaaatagaggagacagatgcaacca
tggttctcttggagctcaagacttggagaatagacaatgatacaggtgcc
tgcagcaaagcctaaggattctgtaggaagagcgcatacatacgccccaa
gaaacagcagctgctcgaaggtaaccataggaactgggaggtctgagcag
cctgtctgctaggttcaccagaacattgagaccttatgcaggtaggaaaa
gcattccagacaggaggatggaaactcattaagtgggtgtagaatttcag
gtgtgtgtagtctcccagaaatcttatggttaaatgaatggaatgtgcaa
aggctaaagggctccttcagaaaagtcatagaaagtaaaataactaacat
tttccttttgaaatttatcattgcattatattctcagtttcaattaagca
agcaagcaagaaagggagggaaggagggagagagaggggaaacaatagaa
agacagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagggaag
aaagacagaaagagagagagagggagagaggaa
gaattcctaaccccagatagcaaattagcacattaaaagatgaacatgtg
ttactgaatattttttctatgtgaagtttgtaatccacactggtactatc
attttttacctgctaatcatttaaaagagcatactggcaaaaacagcttc
ataaagatatcagtgcaacttgaaatgccaaatgcctgctgactgattta
tgaaaaattctaagatcgtcaatcaggacttttaaatgtaaataattttc
tcatagacagtcttaaaaactggactctaattaactgacctcttatgcaa
tgaacaataatcacatttttttttcagttgtgagcacgcatcaccaccat
gtattccacaaacgcttttaaaggaaggccaaagaagcggcgtttctgcc
ccattactcctcagaaagcctcattagaattcagatactgtatgcaatga
aggccgggagtggagcccaggatggcaaaaatcccctgaaaatccagtaa
gaggcaacctgctgccctagaagagcaaggcctctcccatagggtaaggg
cctcagaatcaagcttccaaccttacctggtacgagcagttctcctgatg
taccatctcagtacatcctaggacgcagaccccaaagctggactgctggg
cgaggctgcgcagggaaagcgctgagcatccacaggcgcgagagaacgcc
ctggttaggcagggactccccgcagattaaaatggatgctgttccgctga
gcaacctgcgcagtggcactgcctgtgctgggaagcgcgcagccaccgag
ctcgctctgaagcctcccagctgctctgctcctccggaaccgggaggcag
gctgctgagccgagctgggaccggcctgggggaagggggcgggcacattc
tcccgtacatcagcccattatattataggcaccaagataagatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68181506_68182338
seq2: B6Ng01-219K06.b_42_874

seq1  GAATTCTTTTGCTCATTCTGAGGCTGTGACAGAATTAAATTATTGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCTCATTCTGAGGCTGTGACAGAATTAAATTATTGATAGC  50

seq1  CCCCTACTGGCATGAATCAAATACAGGGTGTTTGGTTACAACAGCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACTGGCATGAATCAAATACAGGGTGTTTGGTTACAACAGCTGAAA  100

seq1  GGTTTCTTGAATGCGGGAGCAGCTGATGATTTGACAGAAATTCAATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGAATGCGGGAGCAGCTGATGATTTGACAGAAATTCAATTACT  150

seq1  ATGACTAGTCTACATTAGACTTTGGAGTCAATTTAATTATTCTTCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGTCTACATTAGACTTTGGAGTCAATTTAATTATTCTTCACAAG  200

seq1  ATTTTTAAATTTCACTCTTCTTTAATAGCGTGTTTCAGGAGCTAGAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTTCACTCTTCTTTAATAGCGTGTTTCAGGAGCTAGAGTAC  250

seq1  TGCTGGACAGGACACTGAAACGGTAGAAATAGAGGAGACAGATGCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACAGGACACTGAAACGGTAGAAATAGAGGAGACAGATGCAACCA  300

seq1  TGGTTCTCTTGGAGCTCAAGACTTGGAGAATAGACAATGATACAGGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTTGGAGCTCAAGACTTGGAGAATAGACAATGATACAGGTGCC  350

seq1  TGCAGCAAAGCCTAAGGATTCTGTAGGAAGAGCGCATACATACGCCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAAGCCTAAGGATTCTGTAGGAAGAGCGCATACATACGCCCCAA  400

seq1  GAAACAGCAGCTGCTCGAAGGTAACCATAGGAACTGGGAGGTCTGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCAGCTGCTCGAAGGTAACCATAGGAACTGGGAGGTCTGAGCAG  450

seq1  CCTGTCTGCTAGGTTCACCAGAACATTGAGACCTTATGCAGGTAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGCTAGGTTCACCAGAACATTGAGACCTTATGCAGGTAGGAAAA  500

seq1  GCATTCCAGACAGGAGGATGGAAACTCATTAAGTGGGTGTAGAATTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGACAGGAGGATGGAAACTCATTAAGTGGGTGTAGAATTTCAG  550

seq1  GTGTGTGTAGTCTCCCAGAAATCTTATGGTTAAATGAATGGAATGTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTAGTCTCCCAGAAATCTTATGGTTAAATGAATGGAATGTGCAA  600

seq1  AGGCTAAAGGGCTCCTTCAGAAAAGTCATAGAAAGTAAAATAACTAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGGGCTCCTTCAGAAAAGTCATAGAAAGTAAAATAACTAACAT  650

seq1  TTTCCTTTTGAAATTTATCATTGCATTATATTCTCAGTTTCAATTAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTGAAATTTATCATTGCATTATATTCTCAGTTTCAATTAAGCA  700

seq1  AGCAAGCAAGAAAGGGAGGGAAGGAGGGAGAGAGAGGGGAAACAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAGAAAGGGAGGGAAGGAGGGAGAGAGAGGGGAAACAATAGAA  750

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG  800
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGGAAG  800

seq1  AAAGAAAGAAAGAGAGAGAGAGGGAGAGAGGGA  833
      ||||| ||||||||||||||||||||||||| |
seq2  AAAGACAGAAAGAGAGAGAGAGGGAGAGAGGAA  833

seq1: chr3_68376215_68377161
seq2: B6Ng01-219K06.g_66_1012 (reverse)

seq1  ACAGATCCTTTTCTTTGTGCCTATAATATAATTGGCTGATTGTGCGGGTG  50
      |||||| ||| |||| |||||||||||||||| |||||| ||| |||| |
seq2  ACAGAT-CTTATCTTGGTGCCTATAATATAATGGGCTGA-TGTACGGGAG  48

seq1  -ATGCGCCCGCCCCC-TCCCCCAGGCCGGTCCCAGCTCGGCTCAGCAGCC  98
       ||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGTGCCCGCCCCCTTCCCCCAGGCCGGTCCCAGCTCGGCTCAGCAGCC  98

seq1  TGCCTCCCGGTTCCGGAGGAGCAGAGCAGCTTGGAGGCTTCAGAGCGAGC  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCCTCCCGGTTCCGGAGGAGCAGAGCAGCTGGGAGGCTTCAGAGCGAGC  148

seq1  TCGGTGGCTGCGCGCTTCCCAGCACAGGCAGTGCCACTGCGCAGGTTGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGCTGCGCGCTTCCCAGCACAGGCAGTGCCACTGCGCAGGTTGCT  198

seq1  CAGCGGAACAGCATCCATTTTAATCTGCGGGGAGTCCCTGCCTAACCAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGAACAGCATCCATTTTAATCTGCGGGGAGTCCCTGCCTAACCAGG  248

seq1  GCGTTCTCTCGCGCCTGTGGATGCTCAGCGCTTTCCCTGCGCAGCCTCGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTCTCGCGCCTGTGGATGCTCAGCGCTTTCCCTGCGCAGCCTCGC  298

seq1  CCAGCAGTCCAGCTTTGGGGTCTGCGTCCTAGGATGTACTGAGATGGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTCCAGCTTTGGGGTCTGCGTCCTAGGATGTACTGAGATGGTAC  348

seq1  ATCAGGAGAACTGCTCGTACCAGGTAAGGTTGGAAGCTTGATTCTGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGAACTGCTCGTACCAGGTAAGGTTGGAAGCTTGATTCTGAGGC  398

seq1  CCTTACCCTATGGGAGAGGCCTTGCTCTTCTAGGGCAGCAGGTTGCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCTATGGGAGAGGCCTTGCTCTTCTAGGGCAGCAGGTTGCCTCT  448

seq1  TACTGGATTTTCAGGGGATTTTTGCCATCCTGGGCTCCACTCCCGGCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATTTTCAGGGGATTTTTGCCATCCTGGGCTCCACTCCCGGCCTT  498

seq1  CATTGCATACAGTATCTGAATTCTAATGAGGCTTTCTGAGGAGTAATGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATACAGTATCTGAATTCTAATGAGGCTTTCTGAGGAGTAATGGG  548

seq1  GCAGAAACGCCGCTTCTTTGGCCTTCCTTTAAAAGCGTTTGTGGAATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACGCCGCTTCTTTGGCCTTCCTTTAAAAGCGTTTGTGGAATACA  598

seq1  TGGTGGTGATGCGTGCTCACAACTGAAAAAAAAATGTGATTATTGTTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGATGCGTGCTCACAACTGAAAAAAAAATGTGATTATTGTTCAT  648

seq1  TGCATAAGAGGTCAGTTAATTAGAGTCCAGTTTTTAAGACTGTCTATGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGAGGTCAGTTAATTAGAGTCCAGTTTTTAAGACTGTCTATGAG  698

seq1  AAAATTATTTACATTTAAAAGTCCTGATTGACGATCTTAGAATTTTTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTACATTTAAAAGTCCTGATTGACGATCTTAGAATTTTTCAT  748

seq1  AAATCAGTCAGCAGGCATTTGGCATTTCAAGTTGCACTGATATCTTTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTCAGCAGGCATTTGGCATTTCAAGTTGCACTGATATCTTTATG  798

seq1  AAGCTGTTTTTGCCAGTATGCTCTTTTAAATGATTAGCAGGTAAAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTTTGCCAGTATGCTCTTTTAAATGATTAGCAGGTAAAAAATG  848

seq1  ATAGTACCAGTGTGGATTACAAACTTCACATAGAAAAAATATTCAGTAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCAGTGTGGATTACAAACTTCACATAGAAAAAATATTCAGTAAC  898

seq1  ACATGTTCATCTTTTAATGTGCTAATTTGCTATCTGGGGTTAGGAATTC  947
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCATCTTTTAATGTGCTAATTTGCTATCTGGGGTTAGGAATTC  947