BAC Information

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BAC

Clone NameB6Ng01-219O21
Chromosome3 (Build37)
Map Location 93,740,146 - 93,877,231
singlet/doubletdoublet
Overlap geneEG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
Upstream geneLce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344
Downstream geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219O21.bB6Ng01-219O21.g
ACCGA035624GA035625
length1,132958
definitionB6Ng01-219O21.b B6Ng01-219O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,876,102 - 93,877,231)(93,740,146 - 93,741,104)
sequence
gaattctgcaccagacccatctggtggtgggctttttttggatgggagac
atttaatgtcttatttctctttctttcttttttttttaagatttatttat
ttatttattatatgtaagcacactgtaggtgtcctcagacactccagaag
agggagtcagatctcgtgatcagatggttgtgagccatcatgtggttgct
gggatttgaactcctgaccttcagaagagcagtcgggtgctcttacccac
tgagccatctcaccagctccttatttctctttctttaggggttatgggat
tgtttagatggtttgcaggaggaacaagccacaatcagagacagcaagac
tagctaacaccacagataaccagatggcagtagaaatataacacaatata
aatgagagtgtttagaatttttcaagctcttacacagttggatagaatag
ccaaaacgaattaccatagacctaagattcaataaacacacaaacacaaa
atggcagtgataacacaagtatccaacatcatagaaggggcaatttcgaa
gaaattgaaactaaaaataaagtgtattataattgtaaccaacaggatga
agagtaaataacccctaattcttcttttcagatcaaatttaacctccaat
ctacctccagcagaaatgtcagaggacatggaagtcacgaactggggcta
cacacatatcagtgttaaggaattctgctatgtgtggactattaggaact
tttcaccttgcatagatggaattaggagaacgattacgagcccagtcttc
tcgttagaggccaatgatgaagtgacatggtgtttgagagcacacccaaa
tggggtcgatgaagtaagcgaatgttacatgtcagttttcctggagttgc
tcagctgtcgaaagagcccagtttgggcaaagtacgagttctggatcaca
cttcccaaggagagaaatatcaatgtatgaagagcttcaatgtccatagg
ttttcaaaaaacccaatacaggggattcaaagttcatccttgggagattt
cctcatctctcattccacgtcgattcctcccttgaaaccagctcaaccct
ctgcctgcaaggtgagcatgtaggaatctgtc
gaattctgttaccacgcacagactggcacttttgttagcatgggggcaca
ggtggcctggggtctgggacagagcaaagaggaggaggagggagattcaa
aggagaagatctgtatggtccaaccatatgggaagaatgggcaatgaaaa
ctccaacaggtggtatgctacagaggtggggttgagaaagtaggataggg
tttgtgggaactgatgtaagagaagatctgtaagcagcagtctaactggt
atgctggcaggcatggcctgcagccatggtactcaaactgtgactcccca
tccctttctcggtctaatgacccattcataagggttgaatatcagatatc
ctgtatatcagctatttacagtaggattcataacagaagcaacattacaa
ttatgaagtagccagaaagtactttaatggttctggttgtccacaacatg
aaaaaattcttttaagtcccagcattaagaaatttgaaaaccactagatg
aggttatatacatgtgtaatgaatcaatcccttcaaatgttttcaaaata
gacgaaacatttttgcatgtgttgacccacaaacacttctcccagaaaga
gtagactccctccaatttggcctgctcttcttagttgtcataagagcatg
atggtggagttctaatttgccaccattaaattccaagaaaaaggacaatg
agttttctactactggtgggacagcaaggattctgcacaaacatccacag
ctgagctttggctactttagactacacgttacttatcttaatataaatat
ctctggaatccagactgatttcaaagtttttattcatataaaaattattt
ggttaagatttgtctatgcaactgtttgtggctatgcagaccagaagagg
gtttcgaatccgcctgaataaccacttacaggtggttgaataactccttc
gtgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93876102_93877231
seq2: B6Ng01-219O21.b_46_1177 (reverse)

seq1  GACAGA-TCCTACTATGCTCACCTTGCA-GCAGAGGG-TGAGCTTGTTTT  47
      |||||| |||||| |||||||||||||| |||||||| |||||| |||| 
seq2  GACAGATTCCTAC-ATGCTCACCTTGCAGGCAGAGGGTTGAGCTGGTTTC  49

seq1  CAGGGAGAAACCGACGTGG-ATGAGAGATGAGGAAATCT-CCAAGGATGA  95
       |||||| || |||||||| ||||||||||||||||||| ||||||||||
seq2  AAGGGAGGAATCGACGTGGAATGAGAGATGAGGAAATCTCCCAAGGATGA  99

seq1  ACTTTTTGAATCCCCTGTATTGGTTTTTTTGAAAA-CTATGGACATTGAA  144
      ||  ||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AC--TTTGAATCCCCTGTATTGGGTTTTTTGAAAACCTATGGACATTGAA  147

seq1  GCTCTTCATACATTGATATTTCTCTCCTTGGGAAGTTGTGATCCAGAACT  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTCTTCATACATTGATATTTCTCTCCTTGGGAAG-TGTGATCCAGAACT  196

seq1  CGTACTTTGCCCAAACTGGGCTCTTTCGACAGCTGAGCAACTCCAGGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTTTGCCCAAACTGGGCTCTTTCGACAGCTGAGCAACTCCAGGAAA  246

seq1  ACTGACATGTAACATTCGCTTACTTCATCGACCCCATTTGGGTGTGCTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGTAACATTCGCTTACTTCATCGACCCCATTTGGGTGTGCTCT  296

seq1  CAAACACCATGTCACTTCATCATTGGCCTCTAACGAGAAGACTGGGCTCG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCATGTCACTTCATCATTGGCCTCTAACGAGAAGACTGGGCTCG  346

seq1  TAATCGTTCTCCTAATTCCATCTATGCAAGGTGAAAAGTTCCTAATAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGTTCTCCTAATTCCATCTATGCAAGGTGAAAAGTTCCTAATAGTC  396

seq1  CACACATAGCAGAATTCCTTAACACTGATATGTGTGTAGCCCCAGTTCGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGCAGAATTCCTTAACACTGATATGTGTGTAGCCCCAGTTCGT  446

seq1  GACTTCCATGTCCTCTGACATTTCTGCTGGAGGTAGATTGGAGGTTAAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCATGTCCTCTGACATTTCTGCTGGAGGTAGATTGGAGGTTAAAT  496

seq1  TTGATCTGAAAAGAAGAATTAGGGGTTATTTACTCTTCATCCTGTTGGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGAAAAGAAGAATTAGGGGTTATTTACTCTTCATCCTGTTGGTT  546

seq1  ACAATTATAATACACTTTATTTTTAGTTTCAATTTCTTCGAAATTGCCCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATAATACACTTTATTTTTAGTTTCAATTTCTTCGAAATTGCCCC  596

seq1  TTCTATGATGTTGGATACTTGTGTTATCACTGCCATTTTGTGTTTGTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGATGTTGGATACTTGTGTTATCACTGCCATTTTGTGTTTGTGTG  646

seq1  TTTATTGAATCTTAGGTCTATGGTAATTCGTTTTGGCTATTCTATCCAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAATCTTAGGTCTATGGTAATTCGTTTTGGCTATTCTATCCAAC  696

seq1  TGTGTAAGAGCTTGAAAAATTCTAAACACTCTCATTTATATTGTGTTATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAGCTTGAAAAATTCTAAACACTCTCATTTATATTGTGTTATA  746

seq1  TTTCTACTGCCATCTGGTTATCTGTGGTGTTAGCTAGTCTTGCTGTCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGCCATCTGGTTATCTGTGGTGTTAGCTAGTCTTGCTGTCTCT  796

seq1  GATTGTGGCTTGTTCCTCCTGCAAACCATCTAAACAATCCCATAACCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGGCTTGTTCCTCCTGCAAACCATCTAAACAATCCCATAACCCCT  846

seq1  AAAGAAAGAGAAATAAGGAGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGAAATAAGGAGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  896

seq1  CCGACTGCTCTTCTGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCTCTTCTGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGAT  946

seq1  GGCTCACAACCATCTGATCACGAGATCTGACTCCCTCTTCTGGAGTGTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCATCTGATCACGAGATCTGACTCCCTCTTCTGGAGTGTCT  996

seq1  GAGGACACCTACAGTGTGCTTACATATAATAAATAAATAAATAAATCTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACCTACAGTGTGCTTACATATAATAAATAAATAAATAAATCTTA  1046

seq1  AAAAAAAAAGAAAGAAAGAGAAATAAGACATTAAATGTCTCCCATCCAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAGAAAGAGAAATAAGACATTAAATGTCTCCCATCCAAA  1096

seq1  AAAAGCCCACCACCAGATGGGTCTGGTGCAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCACCACCAGATGGGTCTGGTGCAGAATTC  1132

seq1: chr3_93740146_93741104
seq2: B6Ng01-219O21.g_67_1024

seq1  GAATTCTGTTACCACGCACAGACTGGCACTTTTGTTAGCATGGGGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACCACGCACAGACTGGCACTTTTGTTAGCATGGGGGCACA  50

seq1  GGTGGCCTGGGGTCTGGGACAGAGCAAAGAGGAGGAGGAGGGAGATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTGGGGTCTGGGACAGAGCAAAGAGGAGGAGGAGGGAGATTCAA  100

seq1  AGGAGAAGATCTGTATGGTCCAACCATATGGGAAGAATGGGCAATGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGATCTGTATGGTCCAACCATATGGGAAGAATGGGCAATGAAAA  150

seq1  CTCCAACAGGTGGTATGCTACAGAGGTGGGGTTGAGAAAGTAGGATAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGGTGGTATGCTACAGAGGTGGGGTTGAGAAAGTAGGATAGGG  200

seq1  TTTGTGGGAACTGATGTAAGAGAAGATCTGTAAGCAGCAGTCTAACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGAACTGATGTAAGAGAAGATCTGTAAGCAGCAGTCTAACTGGT  250

seq1  ATGCTGGCAGGCATGGCCTGCAGCCATGGTACTCAAACTGTGACTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCAGGCATGGCCTGCAGCCATGGTACTCAAACTGTGACTCCCCA  300

seq1  TCCCTTTCTCGGTCTAATGACCCATTCATAAGGGTTGAATATCAGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTCGGTCTAATGACCCATTCATAAGGGTTGAATATCAGATATC  350

seq1  CTGTATATCAGCTATTTACAGTAGGATTCATAACAGAAGCAACATTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATCAGCTATTTACAGTAGGATTCATAACAGAAGCAACATTACAA  400

seq1  TTATGAAGTAGCCAGAAAGTACTTTAATGGTTCTGGTTGTCCACAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTAGCCAGAAAGTACTTTAATGGTTCTGGTTGTCCACAACATG  450

seq1  AAAAAATTCTTTTAAGTCCCAGCATTAAGAAATTTGAAAACCACTAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCTTTTAAGTCCCAGCATTAAGAAATTTGAAAACCACTAGATG  500

seq1  AGGTTATATACATGTGTAATGAATCAATCCCTTCAAATGTTTTCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATATACATGTGTAATGAATCAATCCCTTCAAATGTTTTCAAAATA  550

seq1  GACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAGAAAGA  600

seq1  GTAGACTCCCTCCAATTTGGCCTGCTCTTCTTAGTTGTCATAAGAGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTCCCTCCAATTTGGCCTGCTCTTCTTAGTTGTCATAAGAGCATG  650

seq1  ATGGTGGAGTTCTAATTTGCCACCATTAAATTCCAAGAAAAAGGACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGTTCTAATTTGCCACCATTAAATTCCAAGAAAAAGGACAATG  700

seq1  AG-TTTCTACTACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAG  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTACTACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAG  750

seq1  CTGAGC-TTGGCTAC-TTAGACTACACGTTACTTATCTTAATATAAATAT  797
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTGGCTACTTTAGACTACACGTTACTTATCTTAATATAAATAT  800

seq1  CTCTGGAATCCAGACTGATTTCAAAAGTTTTATTCATATTAAAAATTATT  847
      |||||||||||||||||||||||||  ||||||||||| |||||||||||
seq2  CTCTGGAATCCAGACTGATTTCAAAGTTTTTATTCATA-TAAAAATTATT  849

seq1  TGGTTAAAGATTTGTCTATGCAACTGTTTGTGGCTATGCAGACCAGAAGA  897
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTT-AAGATTTGTCTATGCAACTGTTTGTGGCTATGCAGACCAGAAGA  898

seq1  GGGCTTCAGATCCG-CTGAATAACCACTTACAGGTGGCTGAA-AACTCCT  945
      ||| |||  ||||| |||||||||||||||||||||| |||| |||||| 
seq2  GGGTTTCGAATCCGCCTGAATAACCACTTACAGGTGGTTGAATAACTCC-  947

seq1  CTGTGTGTGCTGGG  959
         |  ||||||||
seq2  ---TTCGTGCTGGG  958