BAC Information

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BAC

Clone NameB6Ng01-220C12
Chromosome3 (Build37)
Map Location 114,862,078 - 114,863,264
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220C12.bB6Ng01-220C12.g
ACCGA035788GA035789
length1,169970
definitionB6Ng01-220C12.b B6Ng01-220C12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcaactactacctccagctattaattaagaagtcagtcaaac
agaaatagggagaggttgaggctaaaaaaaaatcacttttcatttggaaa
agcctataagaatgacccataaagcaaattgtgacctatttcaaatagat
tgtgtcagaaaatgacttagaataaaatgacagttaggttttcaattcag
attgtgcccacatatgaatgaaaagctaatttgagtgtgacaatagcatt
ttacaatgctttttgagcatcagagaaatgtgccatagatgtcttttgtt
ggtttgaacaaagattacttaagaacagaacaattgtctgtgcgggcttc
ttccaacatggcttgcctcttttttttcctggtggcctctcaatttattt
acatgtaggacattattagtataatagatgggctaggaaatgaaagtttt
gttatttttaattcagacccaattttgtcaaagactaaatagtaaatatt
tagggctataagtgagaaatctgctgtgataaacctgagtgtgctgtaat
gggatagcagacataggtcagacataaatggatggatgtgtgccttaggt
ttaggtcagacaaactttacttaactaaatgagtcacaggaaaaatctag
ggagttgtcaatccctaacttagctcaccaggatgcatcccagacagatg
taatacattggagttagaattttagatacatcaaacttttaagacttttt
tgaaattccaccattccttttaagtaagaaatctatggcctacattaagg
aaggccatttcttagaactgaaggcatacccacccaatgacaggagaaga
cattctttacccaggccatggattctggaagtacaagatggtcacagaaa
atggagcaaaacagaacaagcaacaaaaatcacctacctgagattgtgaa
agaatatcttctagcagcctatcattgtgtatgtctccatatgcaaatgt
atgctaatttaaatggatatttggcaggcctcaggatcccatttagtgca
actaggagttcctccccaagaatacaacctagaataaaattgttccaagc
tgatatctgattttgttgtctgcatagagctgctgcctcattatccaatc
ctggagtggactgtgcagt

gaattcagtaggattgttacctattcagtaacagtcaaaattacctctag
cattgtgggagagacaggaaaagaaattaggtattgcaatttacttgaat
agagctagaaatctcacggctagtctacatggtaaatacttaggacaata
gctgagccactcccagacacaggaatttacctggcctaggaagaaggtgg
gttgtggtcttagggggaactgaagtattattcatgaaagggttagtaga
acttgcctggtgcctgtttttcactaggcccagaggaatagcataatcaa
gtatttactaaagggcccctcgtggtgggtttaacaatagactagaattg
gaactatggcaagggcatgaagcccttgaccctggcttctaagattaagc
tgactttaagtggggctgcttttgattccagttgttaacattgattttta
tcccaattggttcctgttagcattttgtatacatccctctgttttgtgta
aaagtcacttttaagtcggcttgctttgtgacaaattacattcaggtact
acactcccttgtgtctgtgtctgtttatgaccctttgtcaccgactccct
gcccacctgtaccggaaccctgatttctcctggggactgaggagggacga
ctgaggccagactgtggcaacttcataaacataagatgagcaaagaaaac
aataacagacgtgctaaagtgggctggagaaaggccatcatgcaacagta
ttatacaaagaaccacaggcaactgaagaatcctgagaatgggattccat
cctgagagtgtaatgttcatattacccataaatcaacctttcctagagaa
atgctttatcccaaatcaaatggtcagaactgacaacatgcatacaatta
agactgagtaggttatatttagcaatacacacatatatgcacatactata
ttgtgtttttgcgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114862078_114863264
seq2: B6Ng01-220C12.b_46_1214 (reverse)

seq1  ACTGCACAGGTTTCCCCACTCAGGGAATTGGATAAATGAGCAGGCAGCTC  50
      |||||||||      ||||||  || ||||||| ||||||   |||||||
seq2  ACTGCACAG-----TCCACTCCAGG-ATTGGAT-AATGAGGCAGCAGCTC  43

seq1  TATGCAGACCACAAAAACAGATTAATCAGGCTTTGGAACAATTTTATTCT  100
      ||||||||| |||||| |||||  |||||   ||||||||||||||||||
seq2  TATGCAGACAACAAAATCAGAT--ATCAG--CTTGGAACAATTTTATTCT  89

seq1  AGTTTGTATTCTTTGGGGAGAACTTCCTTAGTTGCAACTAAATGGGGATC  150
      || |||||||||| |||  |||||  | ||||||| ||||||| ||||| 
seq2  AGGTTGTATTCTTGGGGAGGAACT--CCTAGTTGC-ACTAAAT-GGGAT-  134

seq1  CCTGAGGCCTGCCAAATATCCCATTTAAATTAGCATACATTTGCATATGG  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTGAGGCCTGCCAAATAT-CCATTTAAATTAGCATACATTTGCATATGG  183

seq1  AGACATACACAATGATAGGCTGCTAGAAGATATTCTTTCACAATCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACACAATGATAGGCTGCTAGAAGATATTCTTTCACAATCTCAGG  233

seq1  TAGGTGATTTTTGTTGCTTTGTTCTGTTTTGCTCCATTTTCTGTGACCAT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGGTGATTTTTGTTGC-TTGTTCTGTTTTGCTCCATTTTCTGTGACCAT  282

seq1  CTTGTACTTCCAGAATCCATGGCCTGGGTAAAGAATGTCTTCTCCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTTCCAGAATCCATGGCCTGGGTAAAGAATGTCTTCTCCTGTCA  332

seq1  TTGGGTGGGTATGCCTTCAGTTCTAAGAAATGGCCTTCCTTAATGTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTATGCCTTCAGTTCTAAGAAATGGCCTTCCTTAATGTAGGC  382

seq1  CATAGATTTCTTACTTAAAAGGAATGGTGGAATTTCAAAAAAGTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTCTTACTTAAAAGGAATGGTGGAATTTCAAAAAAGTCTTAAA  432

seq1  AGTTTGATGTATCTAAAATTCTAACTCCAATGTATTACATCTGTCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGTATCTAAAATTCTAACTCCAATGTATTACATCTGTCTGGGA  482

seq1  TGCATCCTGGTGAGCTAAGTTAGGGATTGACAACTCCCTAGATTTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGGTGAGCTAAGTTAGGGATTGACAACTCCCTAGATTTTTCCT  532

seq1  GTGACTCATTTAGTTAAGTAAAGTTTGTCTGACCTAAACCTAAGGCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCATTTAGTTAAGTAAAGTTTGTCTGACCTAAACCTAAGGCACAC  582

seq1  ATCCATCCATTTATGTCTGACCTATGTCTGCTATCCCATTACAGCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATTTATGTCTGACCTATGTCTGCTATCCCATTACAGCACACT  632

seq1  CAGGTTTATCACAGCAGATTTCTCACTTATAGCCCTAAATATTTACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATCACAGCAGATTTCTCACTTATAGCCCTAAATATTTACTATT  682

seq1  TAGTCTTTGACAAAATTGGGTCTGAATTAAAAATAACAAAACTTTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGACAAAATTGGGTCTGAATTAAAAATAACAAAACTTTCATTT  732

seq1  CCTAGCCCATCTATTATACTAATAATGTCCTACATGTAAATAAATTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCATCTATTATACTAATAATGTCCTACATGTAAATAAATTGAGA  782

seq1  GGCCACCAGGAAAAAAAAGAGGCAAGCCATGTTGGAAGAAGCCCGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAGGAAAAAAAAGAGGCAAGCCATGTTGGAAGAAGCCCGCACAG  832

seq1  ACAATTGTTCTGTTCTTAAGTAATCTTTGTTCAAACCAACAAAAGACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTCTGTTCTTAAGTAATCTTTGTTCAAACCAACAAAAGACATC  882

seq1  TATGGCACATTTCTCTGATGCTCAAAAAGCATTGTAAAATGCTATTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCACATTTCTCTGATGCTCAAAAAGCATTGTAAAATGCTATTGTCA  932

seq1  CACTCAAATTAGCTTTTCATTCATATGTGGGCACAATCTGAATTGAAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAATTAGCTTTTCATTCATATGTGGGCACAATCTGAATTGAAAAC  982

seq1  CTAACTGTCATTTTATTCTAAGTCATTTTCTGACACAATCTATTTGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTCATTTTATTCTAAGTCATTTTCTGACACAATCTATTTGAAAT  1032

seq1  AGGTCACAATTTGCTTTATGGGTCATTCTTATAGGCTTTTCCAAATGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAATTTGCTTTATGGGTCATTCTTATAGGCTTTTCCAAATGAAA  1082

seq1  AGTGATTTTTTTTTAGCCTCAACCTCTCCCTATTTCTGTTTGACTGACTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTTTTTAGCCTCAACCTCTCCCTATTTCTGTTTGACTGACTT  1132

seq1  CTTAATTAATAGCTGGAGGTAGTAGTTGAATGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAATAGCTGGAGGTAGTAGTTGAATGAATTC  1169


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