BAC Information

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BAC

Clone NameB6Ng01-220D16
Chromosome3 (Build37)
Map Location 156,616,353 - 156,789,394
singlet/doubletdoublet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220D16.bB6Ng01-220D16.g
ACCGA035843GA035844
length2671,060
definitionB6Ng01-220D16.b B6Ng01-220D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,616,353 - 156,616,619)(156,788,329 - 156,789,394)
sequence
gaattcaccgaattgccaagtcaaaaaaaaaaccttgtgtttaactaact
caggaaccattaatcaaaaggagacagacagacagacagaaagaaatata
agggagggagggagagagagagagagagagagagagagagagagagagag
agagagagcgagaatgaatatcacaaatacactgaatcttatttcaatat
cactggggctcagacttcagctatcatctagtgatctgctatgaggtggg
aataaggttagctattc
gaattccatgtgacaagaaaaaacaaaaacaaaaaaccaaactcttgaaa
atttagagtctctaccagggtaaagattaatcacagcttgagcgacttga
tccactgacaggaagtatcagtcaggcactgacatcaaaagcaagcactt
cggctgtgaaaggcaggtcataaagtccataggtcagaatggctatttcc
taagaaatatcaccaaataatattttctagacacttagggtccattttga
tgcagttttacgaaaaacccacactcttttgagtattcatgcaatcaggc
attttttttttaacttgcaaaatggtcattttcatagctgaatgctgctc
agtgaaaacaattaatagaatcagcaaagtatgtatctgaaaggaacaca
tttggtgacaagctaggtggtgttataagtgttcttggtgcttcttcagg
agctttggtgtgcccgtgggtcactgggcttgtaatgatttcccagcacc
ttgaggtcaaagggaaaactgaatggaggatttgtatggggagaagaggg
caagcagggagagatttactgtgtgaaattgataatatggagaacacatg
aatgatgtgtcttttcttgtttctatgacagaagtggcaaacagcttacc
atccctttggggcatgtggctttcactgtgtagcatgtaaatcccccgtg
ttctactgatgagtgatatctttttttccaatttttattaggtatttact
tcatttacatttcaaatgctaccccaaatgtcccctactcccctacctac
ccactcccacttcttggccctggtgtttcccctgttctggggcatataaa
gtgtgcaagaccaagagcctctcttcccaatgatggccgactaggccatc
ttctgttacatatgcagctagagacaggagctctgggggtactgggttag
ttcatattgttcaacctatagggtgcagaccctgtagctcttggatactt
tctctagcttctcatgggggccctgtgttcattcaatagatgactgtgag
catcacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156616353_156616619
seq2: B6Ng01-220D16.b_40_306

seq1  GAATTCACCGAATTGCCAAGTCAAAAAAAAAACCTTGTGTTTAACTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGAATTGCCAAGTCAAAAAAAAAACCTTGTGTTTAACTAACT  50

seq1  CAGGAACCATTAATCAAAAGGAGACAGACAGACAGACAGAAAGAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCATTAATCAAAAGGAGACAGACAGACAGACAGAAAGAAATATA  100

seq1  AGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGCGAGAATGAATATCACAAATACACTGAATCTTATTTCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCGAGAATGAATATCACAAATACACTGAATCTTATTTCAATAT  200

seq1  CACTGGGGCTCAGACGTCAGCTATCAGCAAGTGATCTGCCATGAGGTGGG  250
      ||||||||||||||| |||||||||| | |||||||||| ||||||||||
seq2  CACTGGGGCTCAGACTTCAGCTATCATCTAGTGATCTGCTATGAGGTGGG  250

seq1  AAGAAGGTAAGCTATAC  267
      || ||||| |||||| |
seq2  AATAAGGTTAGCTATTC  267

seq1: chr3_156788329_156789394
seq2: B6Ng01-220D16.g_67_1126 (reverse)

seq1  AGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAAT  50
      |||||| ||||||||||||||||||||| || ||||||||||||||||  
seq2  AGAAGT-GATGCTCACAGTCATCTATTGAAT-GAACACAGGGCCCCCA--  46

seq1  GGAGGAGCTAGAGAAAGTATCCAAGGAGCTACAGGGTTCTGCAACCCTAT  100
       ||| ||||||||||||||||||| ||||||||||| ||||| |||||||
seq2  TGAGAAGCTAGAGAAAGTATCCAA-GAGCTACAGGG-TCTGC-ACCCTAT  93

seq1  AGGTTGAACAATATGAACTAA-CCAGTACCCCCAGAGCTCCTGTCTCTAG  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGTTGAACAATATGAACTAACCCAGTACCCCCAGAGCTCCTGTCTCTAG  143

seq1  CTGCATATGTAACAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTAACAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGG  193

seq1  CTCTTGGTCTTGCACACTTTATATGCCCCAGAACAGGGGAAACACCAGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTCTTGCACACTTTATATGCCCCAGAACAGGGGAAACACCAGGG  243

seq1  CCAAGAAGTGGGAGTGGGTAGGTAGGGGAGTAGGGGACATTTGGGGTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTGGGAGTGGGTAGGTAGGGGAGTAGGGGACATTTGGGGTAGC  293

seq1  ATTTGAAATGTAAATGAAGTAAATACCTAATAAAAATTGGAAAAAAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTAAATGAAGTAAATACCTAATAAAAATTGGAAAAAAAGAT  343

seq1  ATCACTCATCAGTAGAACACGGGGGATTTACATGCTACACAGTGAAAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATCAGTAGAACACGGGGGATTTACATGCTACACAGTGAAAGCC  393

seq1  ACATGCCCCAAAGGGATGGTAAGCTGTTTGCCACTTCTGTCATAGAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCCAAAGGGATGGTAAGCTGTTTGCCACTTCTGTCATAGAAACA  443

seq1  AGAAAAGACACATCATTCATGTGTTCTCCATATTATCAATTTCACACAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACACATCATTCATGTGTTCTCCATATTATCAATTTCACACAGT  493

seq1  AAATCTCTCCCTGCTTGCCCTCTTCTCCCCATACAAATCCTCCATTCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCCCTGCTTGCCCTCTTCTCCCCATACAAATCCTCCATTCAGT  543

seq1  TTTCCCTTTGACCTCAAGGTGCTGGGAAATCATTACAAGCCCAGTGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTGACCTCAAGGTGCTGGGAAATCATTACAAGCCCAGTGACCC  593

seq1  ACGGGCACACCAAAGCTCCTGAAGAAGCACCAAGAACACTTATAACACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCACACCAAAGCTCCTGAAGAAGCACCAAGAACACTTATAACACCA  643

seq1  CCTAGCTTGTCACCAAATGTGTTCCTTTCAGATACATACTTTGCTGATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTGTCACCAAATGTGTTCCTTTCAGATACATACTTTGCTGATTC  693

seq1  TATTAATTGTTTTCACTGAGCAGCATTCAGCTATGAAAATGACCATTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTGTTTTCACTGAGCAGCATTCAGCTATGAAAATGACCATTTTG  743

seq1  CAAGTTAAAAAAAAAATGCCTGATTGCATGAATACTCAAAAGAGTGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAAAAAAAAAATGCCTGATTGCATGAATACTCAAAAGAGTGTGGG  793

seq1  TTTTTCGTAAAACTGCATCAAAATGGACCCTAAGTGTCTAGAAAATATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGTAAAACTGCATCAAAATGGACCCTAAGTGTCTAGAAAATATTA  843

seq1  TTTGGTGATATTTCTTAGGAAATAGCCATTCTGACCTATGGACTTTATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGATATTTCTTAGGAAATAGCCATTCTGACCTATGGACTTTATGA  893

seq1  CCTGCCTTTCACAGCCGAAGTGCTTGCTTTTGATGTCAGTGCCTGACTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTCACAGCCGAAGTGCTTGCTTTTGATGTCAGTGCCTGACTGA  943

seq1  TACTTCCTGTCAGTGGATCAAGTCGCTCAAGCTGTGATTAATCTTTACCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTGTCAGTGGATCAAGTCGCTCAAGCTGTGATTAATCTTTACCC  993

seq1  TGGTAGAGACTCTAAATTTTCAAGAGTTTGGTTTTTTGTTTTTGTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGACTCTAAATTTTCAAGAGTTTGGTTTTTTGTTTTTGTTTTTT  1043

seq1  CTTGTCACATGGAATTC  1066
      |||||||||||||||||
seq2  CTTGTCACATGGAATTC  1060