BAC Information

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BAC

Clone NameB6Ng01-220H13
Chromosome3 (Build37)
Map Location 64,325,436 - 64,528,218
singlet/doubletdoublet
Overlap gene4930518C23Rik, EG667069, LOC100040918, 4933425M15Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060
Downstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220H13.bB6Ng01-220H13.g
ACCGA036020GA036021
length925447
definitionB6Ng01-220H13.b B6Ng01-220H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,527,299 - 64,528,218)(64,325,436 - 64,325,888)
sequence
gaattctgtgaaactagatttttcttgatgtattgattcttaaacaataa
aaaattgaggcataggggcacagcacagcacagcacagcacagcacagca
cagcacagcacagcacagcacagcacagcacagcacagcacagcacagta
cagcacaatattaatggcccaggtgcatgctgtgcgttctcatcttggaa
acaatgtaggaactgcacaatggtagttccagattaatgtttgacttgca
aagaaagtgtgaagaaattattagaaaatgaatacagagatcccaagaaa
ggaaaagaaatgaaattatgagaagtttgtacaacatttgatagtggttt
ttggataataaagaatagaacacataaaatcatatattagtaaaacaaag
tcaaaacactgggactcttaggagagtcagtgtgtgcaatgtgcagaagc
agaaagctagtagaactactgacttaatggctaagttgattctttctggc
cactgcttggcagctctgcccatgtcacttatcattagagcttcaggtag
cattagaaaattcaagtagctggcctcagagctctgagctctgaagtata
acaagttaagaattaaagtttaaataatgataagttcataattattattt
tggctaaaggcttgggagtagggaagcttgaaactttggggaacaattgt
aattctttattctttgtgggatgtggttattattttgaatttgatttggc
aatgattatacaatatattttttctacctccttttggagtatcaatgaaa
gaccggggcaaaaaaaaaaaaaggccaaagagagcatgagaagagcatga
gaaaagtgagtaaagaaagaatgtgaagagtgagtcaggagtgaatgtga
ggtgtatatgggtggggttttgtgt
aatgcctctgttctcttagacacctacattcctgtgtatgtacaccacat
atgcacataaatttaaaaaaatttattggtgccatgcaaacctggaagaa
tcttagcatcttgacataaaaggtaatctgtcaaattctttctatttcat
ttccaaatgaacaaattgctagaaactaccatagcatactcccattgaca
tcctaggatgttggtctatctattcctatgcacctgcaaatttcactaag
tttttaggtctcagaccagaactggccagggacatactgcttctacacct
taaactatacttctgtttccaattagggctgtatttatatgattagggta
ctaaatacttcaagatatttctgttaggaaaagataattccaaaggcact
ttcgattattaaaaaaaaatcaagttccacattacatttattataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64527299_64528218
seq2: B6Ng01-220H13.b_45_969 (reverse)

seq1  ACACAAA--CACA-CCATATACACCTCACATTCACTCCTGACTCACTCTT  47
      |||||||  | || ||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACCCCACCCATATACACCTCACATTCACTCCTGACTCACTCTT  50

seq1  CACATTCTTTCTTTACTCACTTTTCTCATGCTCTTCTCATGCTCTC-TTG  96
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACATTCTTTCTTTACTCACTTTTCTCATGCTCTTCTCATGCTCTCTTTG  100

seq1  GCC-TTTTTTTTTTTTGCCCCGGTCTTTCATTGATACTCCAAAAGGAGGT  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTTTTTTTTTGCCCCGGTCTTTCATTGATACTCCAAAAGGAGGT  150

seq1  AGAAAAAATATATTGTATAATCATTGCCAAATCAAATTCAAAATAATAAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATATATTGTATAATCATTGCCAAATCAAATTCAAAATAATAAC  200

seq1  CACATCCCACAAAGAATAAAGAATTACAATTGTTCCCCAAAGTTTCAAGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCACAAAGAATAAAGAATTACAATTGTTCCCCAAAGTTTCAAGC  250

seq1  TTCCCTACTCCCAAGCCTTTAGCCAAAATAATAATTATGAACTTATCATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACTCCCAAGCCTTTAGCCAAAATAATAATTATGAACTTATCATT  300

seq1  ATTTAAACTTTAATTCTTAACTTGTTATACTTCAGAGCTCAGAGCTCTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTTTAATTCTTAACTTGTTATACTTCAGAGCTCAGAGCTCTGA  350

seq1  GGCCAGCTACTTGAATTTTCTAATGCTACCTGAAGCTCTAATGATAAGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTACTTGAATTTTCTAATGCTACCTGAAGCTCTAATGATAAGTG  400

seq1  ACATGGGCAGAGCTGCCAAGCAGTGGCCAGAAAGAATCAACTTAGCCATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCAGAGCTGCCAAGCAGTGGCCAGAAAGAATCAACTTAGCCATT  450

seq1  AAGTCAGTAGTTCTACTAGCTTTCTGCTTCTGCACATTGCACACACTGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTAGTTCTACTAGCTTTCTGCTTCTGCACATTGCACACACTGAC  500

seq1  TCTCCTAAGAGTCCCAGTGTTTTGACTTTGTTTTACTAATATATGATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGAGTCCCAGTGTTTTGACTTTGTTTTACTAATATATGATTTT  550

seq1  ATGTGTTCTATTCTTTATTATCCAAAAACCACTATCAAATGTTGTACAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTATTCTTTATTATCCAAAAACCACTATCAAATGTTGTACAAA  600

seq1  CTTCTCATAATTTCATTTCTTTTCCTTTCTTGGGATCTCTGTATTCATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATAATTTCATTTCTTTTCCTTTCTTGGGATCTCTGTATTCATTT  650

seq1  TCTAATAATTTCTTCACACTTTCTTTGCAAGTCAAACATTAATCTGGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAATTTCTTCACACTTTCTTTGCAAGTCAAACATTAATCTGGAAC  700

seq1  TACCATTGTGCAGTTCCTACATTGTTTCCAAGATGAGAACGCACAGCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGTGCAGTTCCTACATTGTTTCCAAGATGAGAACGCACAGCATG  750

seq1  CACCTGGGCCATTAATATTGTGCTGTACTGTGCTGTGCTGTGCTGTGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGCCATTAATATTGTGCTGTACTGTGCTGTGCTGTGCTGTGCTG  800

seq1  TGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTG  850

seq1  TGCTGTGCCCCTATGCCTCAATTTTTTATTGTTTAAGAATCAATACATCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCCCTATGCCTCAATTTTTTATTGTTTAAGAATCAATACATCA  900

seq1  AGAAAAATCTAGTTTCACAGAATTC  920
      |||||||||||||||||||||||||
seq2  AGAAAAATCTAGTTTCACAGAATTC  925

seq1: chr3_64325436_64325888
seq2: B6Ng01-220H13.g_65_517

seq1  GAATTCAATGCCTCTGTTCTCTTAGACACCTACATTCCTGTGTATGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCTCTGTTCTCTTAGACACCTACATTCCTGTGTATGTACA  50

seq1  CCACATATGCACATAAATTTAAAAAAATTTATTGGTGCCATGCAAACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATGCACATAAATTTAAAAAAATTTATTGGTGCCATGCAAACCTG  100

seq1  GAAGAATCTTAGCATCTTGACATAAAAGGTAATCTGTCAAATTCTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTTAGCATCTTGACATAAAAGGTAATCTGTCAAATTCTTTCTA  150

seq1  TTTCATTTCCAAATGAACAAATTGCTAGAAACTACCATAGCATACTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCAAATGAACAAATTGCTAGAAACTACCATAGCATACTCCCA  200

seq1  TTGACATCCTAGGATGTTGGTCTATCTATTCCTATGCACCTGCAAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCTAGGATGTTGGTCTATCTATTCCTATGCACCTGCAAATTTC  250

seq1  ACTAAGTTTTTAGGTCTCAGACCAGAACTGGCCAGGGACATACTGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTTTAGGTCTCAGACCAGAACTGGCCAGGGACATACTGCTTCT  300

seq1  ACACCTTAAACTATACTTCTGTTTCCAATTAGGGCTGTATTTATATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTAAACTATACTTCTGTTTCCAATTAGGGCTGTATTTATATGATT  350

seq1  AGGGTACTAAATACTTCAAGATATTTCTGTTAGGAAAAGATAATTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTAAATACTTCAAGATATTTCTGTTAGGAAAAGATAATTCCAAA  400

seq1  GGCACTTTCGTTTATTAAAAAAAAATCAAGTTCCACATTACATTTATTAT  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTCGATTATTAAAAAAAAATCAAGTTCCACATTACATTTATTAT  450

seq1  AAT  453
      |||
seq2  AAT  453