BAC Information

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BAC

Clone NameB6Ng01-220K18
Chromosome3 (Build37)
Map Location 119,804,389 - 119,878,893
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K18.bB6Ng01-220K18.g
ACCGA036171GA036172
length1,142377
definitionB6Ng01-220K18.b B6Ng01-220K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,804,389 - 119,805,534)(119,878,511 - 119,878,893)
sequence
gaattctatgagaacaagatgacaaacgtgctttggaaagtcatcttaac
tgaaatataataaactgggatgtttattaattgaatcttatatctcactg
ggtgaaagttggttatggaaatataggttcttttgcccatccagtttacc
tggtgcatttgcaaaatgtgatcctggggtaagaaaaattataatcaggc
aagagaatcatagctttcccttaccacacaggcttcctagtggtgaatgt
gaagggctatgaacagaaatttgaagatttaattcaaaagaatacataag
acatacatcttataataatgacatttaagaacaaatcaagatatctttaa
atcaatggattagaaatttgaggcagggagatgtccagaaatcagtgtcc
agttaaatattagaaatagcttggaagagcattagtgaaattaaataaag
acaagaaaatataaaagatacaaagcagaaggactaaatagaagaaaata
tcaagtgcatttaagaccaaactttctggcctagaagaactataaaatca
gactgcagacttgagtcagcttgtcagtcatagtacttttatgcatttgt
gttggaccaaattctactgtctaaaatcaattggttatacatttagtgag
ctatagaaagctgttggtgataagctatgacatttatatttcattgaaaa
ttactttaactgtattcttttgaaagagcattctagatgtcttctagaaa
cttaaattctagattgacaagcttgttccctaagcaaagaagatgttata
cttgcatccataccctcaaacaattttgtaatattttcttctgtttattt
ccaattctgtgatttctgatatatagtttttagttgtgagtctatatggt
gatttttggttatatctgtttgagtagatcagaggctcttgactcagtca
ttgtgtgttctaatatactgattaagttatccatcattatccccagagaa
tatttcatttcatgtctttactcttttccttttagacacttgtatagaga
agtttctatattccagggaatttatctccatgagaatccactggctgttc
agtacacctggaaccatacttgccagggtccaaaaatgatta

cagacatcaggagctacagaaaacactccacagtcctcagaaaggtttcc
tcacatagtcactaaactctgtgtatggtatgtgtgttacaaacttccca
caattgcgcaaggattgtttgaaaagattacaaaaatcaaggctcagcat
tcatagaaaacttggaggggtgcctgattcatcctctgtactgtaaattc
ctccaagtcatggcattcatggagaatgattcacaatggcctcatttcag
gaagtagttggaatactaaattgtttccacatttaaatttttaaaagaaa
aagaaaaaggaggagaaggagacagaggagaaaggaaggaaggaaggaag
gaaggaaggaaggaagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119804389_119805534
seq2: B6Ng01-220K18.b_44_1185

seq1  GAATTCTATGAGAACAAGATGACAAACGTGCTTTGGAAAGTCATCTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGAACAAGATGACAAACGTGCTTTGGAAAGTCATCTTAAC  50

seq1  TGAAATATAATAAACTGGGATGTTTATTAATTGAATCTTATATCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAATAAACTGGGATGTTTATTAATTGAATCTTATATCTCACTG  100

seq1  GGTGAAAGTTGGTTATGGAAATATAGGTTCTTTTGCCCATCCAGTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGTTGGTTATGGAAATATAGGTTCTTTTGCCCATCCAGTTTACC  150

seq1  TGGTGCATTTGCAAAATGTGATCCTGGGGTAAGAAAAATTATAATCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTTGCAAAATGTGATCCTGGGGTAAGAAAAATTATAATCAGGC  200

seq1  AAGAGAATCATAGCTTTCCCTTACCACACAGGCTTCCTAGTGGTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATCATAGCTTTCCCTTACCACACAGGCTTCCTAGTGGTGAATGT  250

seq1  GAAGGGCTATGAACAGAAATTTGAAGATTTAATTCAAAAGAATACATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTATGAACAGAAATTTGAAGATTTAATTCAAAAGAATACATAAG  300

seq1  ACATACATCTTATAATAATGACATTTAAGAACAAATCAAGATATCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCTTATAATAATGACATTTAAGAACAAATCAAGATATCTTTAA  350

seq1  ATCAATGGATTAGAAATTTGAGGCAGGGAGATGTCCAGAAATCAGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGATTAGAAATTTGAGGCAGGGAGATGTCCAGAAATCAGTGTCC  400

seq1  AGTTAAATATTAGAAATAGCTTGGAAGAGCATTAGTGAAATTAAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATATTAGAAATAGCTTGGAAGAGCATTAGTGAAATTAAATAAAG  450

seq1  ACAAGAAAATATAAAAGATACAAAGCAGAAGGACTAAATAGAAGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAATATAAAAGATACAAAGCAGAAGGACTAAATAGAAGAAAATA  500

seq1  TCAAGTGCATTTAAGACCAAACTTTCTGGCCTAGAAGAACTATAAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCATTTAAGACCAAACTTTCTGGCCTAGAAGAACTATAAAATCA  550

seq1  GACTGCAGACTTGAGTCAGCTTGTCAGTCATAGTACTTTTATGCATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGACTTGAGTCAGCTTGTCAGTCATAGTACTTTTATGCATTTGT  600

seq1  GTTGGACCAAATTCTACTGTCTAAAATCAATTGGTTATACATTTAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACCAAATTCTACTGTCTAAAATCAATTGGTTATACATTTAGTGAG  650

seq1  CTATAGAAAGCTGTTGGTGATAAGCTATGACATTTATATTTCATTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAAGCTGTTGGTGATAAGCTATGACATTTATATTTCATTGAAAA  700

seq1  TTACTTTAACTGTATTCTTTTGAAAGAGCATTCTAGATGTCTTCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAACTGTATTCTTTTGAAAGAGCATTCTAGATGTCTTCTAGAAA  750

seq1  CTTAAATTCTAGATTGACAAGCTTGTTCCCTAAGCAAAGAAGATGTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTCTAGATTGACAAGCTTGTTCCCTAAGCAAAGAAGATGTTATA  800

seq1  CTTGCATCCATACCCTCAAACAATTTTGTAATATTTTCTTCTGTTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCCATACCCTCAAACAATTTTGTAATATTTTCTTCTGTTTATTT  850

seq1  CCAATTCTGTGATTTCTGATATATAGTTTTTAGTTGTGAGTCTATATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTGTGATTTCTGATATATAGTTTTTAGTTGTGAGTCTATATGGT  900

seq1  GATTTTTGGTTATATCTGTTTGAGTAGATCAGAGGCTCTTGACTCAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGGTTATATCTGTTTGAGTAGATCAGAGGCTCTTGACTCAGTCA  950

seq1  TTGTGTGTTCTAATATACTGATTAAGTTATCCATCATTATCCCAAGAG-A  999
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTGTGTGTTCTAATATACTGATTAAGTTATCCATCATTATCCCCAGAGAA  1000

seq1  TATTTCATTTCATTGTCTTTACTCTTTTCTTTTAAGACAACTTGTATAGA  1049
      |||||||||||| |||||||||||||||| ||| |||| |||||||||||
seq2  TATTTCATTTCA-TGTCTTTACTCTTTTCCTTTTAGAC-ACTTGTATAGA  1048

seq1  GAAGTTTTCTATATCCCAGGG-ATTTATCT-CATGAAGGAAATCCACTGG  1097
      |||| ||||||||| |||||| |||||||| |||||    ||||||||||
seq2  GAAG-TTTCTATATTCCAGGGAATTTATCTCCATGA---GAATCCACTGG  1094

seq1  CTGTCCAGTTACACTTGG-ACCATACTGGCAGGTGTCCAAAAAATGATTA  1146
      |||| ||| ||||| ||| |||||||| ||  | |||| |||||||||||
seq2  CTGTTCAG-TACACCTGGAACCATACTTGCCAGGGTCC-AAAAATGATTA  1142


seq1: chr3_119878511_119878893
seq2: B6Ng01-220K18.g_64_446 (reverse)

seq1  TCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTC  50

seq1  CTCTGTCTCCTTCTCCTCCTTTTTCTTTTTCTTTTAAAAATTTAAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCCTTCTCCTCCTTTTTCTTTTTCTTTTAAAAATTTAAATGTG  100

seq1  GAAACAATTTAGTATTCCAACTACTTCCTGAAATGAGGCCATTGTGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTTAGTATTCCAACTACTTCCTGAAATGAGGCCATTGTGAATC  150

seq1  ATTCTCCATGAATGCCATGACTTGGAGGAATTTACAGTACAGAGGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCATGAATGCCATGACTTGGAGGAATTTACAGTACAGAGGATGAA  200

seq1  TCAGGCACCCCTCCAAGTTTTCTATGAATGCTGAGCCTTGATTTTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACCCCTCCAAGTTTTCTATGAATGCTGAGCCTTGATTTTTGTAA  250

seq1  TCTTTTCAAACAATCCTTGCGCAATTGTGGGAAGTTTGTAACACACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAACAATCCTTGCGCAATTGTGGGAAGTTTGTAACACACATAC  300

seq1  CATACACAGAGTTTAGTGACTATGTGAGGAAACCTTTCTGAGGACTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGAGTTTAGTGACTATGTGAGGAAACCTTTCTGAGGACTGTGG  350

seq1  AGTGTTTTCTGTAGCTCCTGATGTCTGGAATTC  383
      |||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTGTAGCTCCTGATGTCTGGAATTC  383


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