BAC Information

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BAC

Clone NameB6Ng01-220L09
Chromosome3 (Build37)
Map Location 114,547,927 - 114,688,721
singlet/doubletdoublet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L09.bB6Ng01-220L09.g
ACCGA036201GA036202
length1,0491,079
definitionB6Ng01-220L09.b B6Ng01-220L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,547,927 - 114,548,970)(114,687,914 - 114,688,721)
sequence
gaattcaagacataataaagaataattaacattcttgaattaattgcagt
gtgccattatagaaatgcagataaaatgatagaggacggcaggagggggt
ctctttccaactaagaagaggatggcagcaatactcaaagataatgagtt
gatatccggtgactgaaagtgaattaagtaattaagtaaaatataaagta
aggtcttggcagtgtaaaatccttctttaatgactcactcgagattctgg
gaggaaaaaaaatcacagtaaagaccactatacatttccttactgaaagg
aagtccaaatgaacatctctaaagtgagtccagacaacatgaaatagctt
ttacgttatgatccagaatcttcactagattgtcgtttattattctatct
tctaattgaaccttatgtagtatttggtgtgaataggattctacacttgt
gctagaagtttattcattaacataataactattggttggtttctttaaaa
aagtacaaactatcaatttttgtcatgtctttcttaaaagtatagcagac
agctatgttatgacatataccctttagaaattttagctttattttacaaa
aaaaagtgtatgtgtgtgtgcgtgcttgcatgcatgcatgtgtgtgtgtg
tgtttgtttgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgcatgcgtgtg
cgtgtgctcatttgtgcttgcttctgcttaatgtttcaggaccaacccct
gcaaatctccctatccaaatggtctttattcagattacatccggtagtat
tatgtccaatttttctgaggaaccctcccaaactgatttccaaagtgtgt
atcagcttgcaataccaccagaaatccaagagtgttctcttttctcccac
atcctcaccagcatctgctgtcacctgacattttgatctcagccatttct
gactggtatgaggtagaatctcagattgttttgatttgcatttccctgat
gattaagatgttgaacatttttttagtgcttctctgtttgagtattcat

gaattccaagcccagggtcaactcaaggactgcctagaacatgggaacac
tggtggaggctaatccaacttagctatatgtcaaaagcaatccttagagg
aacttataaaacaatattgaaggaaaacacatagatctgttcactgatta
aagcaaggacagatttggagcattccttttacaggatgccatggttccag
gagactaagtttccatgaacttttcgtcacgggactgcatccaagcttta
gagcctgtcacccagagtcactactggagtgggtgtcgcaggaagtcaag
ttggagagattcctaatatataataaagacattactaggataaaagtctc
attgtaaactccaaatggagactgttatataaccaatcaaaattccaagt
tgtagagcccagtcccagtggatacaagtacaaatgaactctacacaatg
cttagggaacaatgcaagagaggtgatagagaatccgagcagaagattag
gagtgtgccttcagattgtgcctcctacatgatttcattatttagttagt
tagttagtttatttttgagagtgtattttgattacatttctcctttcctt
tcctctgtgcaagccctgtcatatacacctccctgttctccctcatgtgt
ggcctagagttgtgttatcttaatgattatattatggaatattttagttc
aatattttcatacatactttaaagcggcataaatttttcatttaatccat
tcccaaataaaattgtaataacagacatatggaaaaacagtagctgagta
taacttttgataatcacactttcccatctgagttttataatgttcatact
acccataaagctcacttagagcccaaagttaacagtatttgtaaacttca
tatccagaatatttgatatatcttttattataagcttagaaaaccacaaa
ccttgattatacttaacacataagggaacttgattttttttttttatcag
ttttaagcatactaaaatgggttattgaaacccttttatataatactata
tgcacctagagagaatagcattttctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114547927_114548970
seq2: B6Ng01-220L09.b_45_1093

seq1  GAATTCAAGACATAATAAAGAATAATTAACATTCTTGAATTAATTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACATAATAAAGAATAATTAACATTCTTGAATTAATTGCAGT  50

seq1  GTGCCATTATAGAAATGCAGATAAAATGATAGAGGACGGCAGGAGGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTATAGAAATGCAGATAAAATGATAGAGGACGGCAGGAGGGGGT  100

seq1  CTCTTTCCAACTAAGAAGAGGATGGCAGCAATACTCAAAGATAATGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAACTAAGAAGAGGATGGCAGCAATACTCAAAGATAATGAGTT  150

seq1  GATATCCGGTGACTGAAAGTGAATTAAGTAATTAAGTAAAATATAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCGGTGACTGAAAGTGAATTAAGTAATTAAGTAAAATATAAAGTA  200

seq1  AGGTCTTGGCAGTGTAAAATCCTTCTTTAATGACTCACTCGAGATTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGGCAGTGTAAAATCCTTCTTTAATGACTCACTCGAGATTCTGG  250

seq1  GAGGAAAAAAAATCACAGTAAAGACCACTATACATTTCCTTACTGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAAATCACAGTAAAGACCACTATACATTTCCTTACTGAAAGG  300

seq1  AAGTCCAAATGAACATCTCTAAAGTGAGTCCAGACAACATGAAATAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAATGAACATCTCTAAAGTGAGTCCAGACAACATGAAATAGCTT  350

seq1  TTACGTTATGATCCAGAATCTTCACTAGATTGTCGTTTATTATTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTTATGATCCAGAATCTTCACTAGATTGTCGTTTATTATTCTATCT  400

seq1  TCTAATTGAACCTTATGTAGTATTTGGTGTGAATAGGATTCTACACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTGAACCTTATGTAGTATTTGGTGTGAATAGGATTCTACACTTGT  450

seq1  GCTAGAAGTTTATTCATTAACATAATAACTATTGGTTGGTTTCTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGTTTATTCATTAACATAATAACTATTGGTTGGTTTCTTTAAAA  500

seq1  AAGTACAAACTATCAATTTTTGTCATGTCTTTCTTAAAAGTATAGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAACTATCAATTTTTGTCATGTCTTTCTTAAAAGTATAGCAGAC  550

seq1  AGCTATGTTATGACATATACCCTTTAGAAATTTTAGCTTTATTTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTTATGACATATACCCTTTAGAAATTTTAGCTTTATTTTACAAA  600

seq1  AAAAAGTGTATGTGTGTGTGCGTGCTTGCATGCATGCATGTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTATGTGTGTGTGCGTGCTTGCATGCATGCATGTGTGTGTGTG  650

seq1  TGTTTGTTTGTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGCATGCGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGCATGCGTGTG  700

seq1  CGTGTGCTCATTTGTGCTTGCTTCTGCTTAATGTTTCAGGACCAACCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCTCATTTGTGCTTGCTTCTGCTTAATGTTTCAGGACCAACCCCT  750

seq1  GCAAATCTCCCTATCCAAATGGTCTTTATTCAGATTACATCCGGTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTCCCTATCCAAATGGTCTTTATTCAGATTACATCCGGTAGTAT  800

seq1  TATGTCCAA-TTTTCTGAGGAACC--TCCAAACTGATTTCCAAAGTGTGT  847
      ||||||||| ||||||||||||||   |||||||||||||||||||||||
seq2  TATGTCCAATTTTTCTGAGGAACCCTCCCAAACTGATTTCCAAAGTGTGT  850

seq1  ATCAGCTTGCAATACCACCAGAAATCCAAGAGTGTTCCTCTTTCT-CCAC  896
      |||||||||||||||||||||||||||||||||||||   ||||| ||||
seq2  ATCAGCTTGCAATACCACCAGAAATCCAAGAGTGTTCTCTTTTCTCCCAC  900

seq1  ATCCTCACCAGCATCTGCTGTCACCTGACATTTTGATCTCAGCCA-TTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCTCACCAGCATCTGCTGTCACCTGACATTTTGATCTCAGCCATTTCT  950

seq1  GACTGGTATGAGGTAGAATCTCAGGATTGTTTTGATTTGCATTTCCCTGA  995
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACTGGTATGAGGTAGAATCTCA-GATTGTTTTGATTTGCATTTCCCTGA  999

seq1  TGATTAAGATGTTGAACATTTTTTAGGTGCTTCTCAG-TTGAGTATTCAT  1044
      ||||||||||||||||||||||||  ||||||||| | ||||||||||||
seq2  TGATTAAGATGTTGAACATTTTTTTAGTGCTTCTCTGTTTGAGTATTCAT  1049


seq1: chr3_114687914_114688721
seq2: B6Ng01-220L09.g_337_1143 (reverse)

seq1  TGTAGAAATTGCTTATTCCTCTCTAGGTTGCATATAGTATTATATAAA--  48
      |||||||| ||| |||| ||||||||| ||||||||||||||||||||  
seq2  TGTAGAAAATGC-TATT-CTCTCTAGG-TGCATATAGTATTATATAAAAG  47

seq1  GGTTTCAATAACCCATTTTAGTAATTGGCTTAAAACTGAT--AAAAAAAA  96
      |||||||||||||||||||||||    |||||||||||||  ||||||||
seq2  GGTTTCAATAACCCATTTTAGTA---TGCTTAAAACTGATAAAAAAAAAA  94

seq1  AATCAAGTTCCTTTATGTGTTAAGTAT-ATCAAGGTTTGTTGGTTTTCTA  145
      ||||||||||| ||||||||||||||| ||||||||||| ||||||||||
seq2  AATCAAGTTCCCTTATGTGTTAAGTATAATCAAGGTTTG-TGGTTTTCTA  143

seq1  AGCTTTATAAT-AAAGATATATCAAATATTCTGGATATGAAGTTTACAAA  194
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGC-TTATAATAAAAGATATATCAAATATTCTGGATATGAAGTTTACAAA  192

seq1  TACTGTTAACTTT-GGCTCTAAGTGAGCTTTATGGGTAGTATGAACATTA  243
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAACTTTGGGCTCTAAGTGAGCTTTATGGGTAGTATGAACATTA  242

seq1  TAAAACTCAGATGGGAAAGTGTGATTATCAAAAGTTATACTCAGCTACTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAGATGGGAAAGTGTGATTATCAAAAGTTATACTCAGCTACTG  292

seq1  TTTTTCCATATGTCTGTTATTACAATTTTATTTGGGAATGGATTAAATGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATATGTCTGTTATTACAATTTTATTTGGGAATGGATTAAATGA  342

seq1  AAAATTTATGCCGCTTTAAAGTATGTATGAAAATATTGAACTAAAATATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATGCCGCTTTAAAGTATGTATGAAAATATTGAACTAAAATATT  392

seq1  CCATAATATAATCATTAAGATAACACAACTCTAGGCCACACATGAGGGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATATAATCATTAAGATAACACAACTCTAGGCCACACATGAGGGAG  442

seq1  AACAGGGAGGTGTATATGACAGGGCTTGCACAGAGGAAAGGAAAGGAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAGGTGTATATGACAGGGCTTGCACAGAGGAAAGGAAAGGAGAA  492

seq1  ATGTAATCAAAATACACTCTCAAAAATAAACTAACTAACTAACTAAATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCAAAATACACTCTCAAAAATAAACTAACTAACTAACTAAATAA  542

seq1  TGAAATCATGTAGGAGGCACAATCTGAAGGCACACTCCTAATCTTCTGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATGTAGGAGGCACAATCTGAAGGCACACTCCTAATCTTCTGCT  592

seq1  CGGATTCTCTATCACCTCTCTTGCATTGTTCCCTAAGCATTGTGTAGAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTCTCTATCACCTCTCTTGCATTGTTCCCTAAGCATTGTGTAGAGT  642

seq1  TCATTTGTACTTGTATCCACTGGGACTGGGCTCTACAACTTGGAATTTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTACTTGTATCCACTGGGACTGGGCTCTACAACTTGGAATTTTG  692

seq1  ATTGGTTATATAACAGTCTCCATTTGGAGTTTACAATGAGACTTTTATCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTATATAACAGTCTCCATTTGGAGTTTACAATGAGACTTTTATCC  742

seq1  TAGTAATGTCTTTATTATATATTAGGAATCTCTCCAACTTGACTTCCTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTCTTTATTATATATTAGGAATCTCTCCAACTTGACTTCCTGC  792

seq1  GACACCCACTCCAGT  808
      |||||||||||||||
seq2  GACACCCACTCCAGT  807


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