BAC Information

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BAC

Clone NameB6Ng01-220M09
Chromosome3 (Build37)
Map Location 83,731,603 - 83,841,546
singlet/doubletdoublet
Overlap geneD930015E06Rik
Upstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M09.bB6Ng01-220M09.g
ACCGA036248GA036249
length9541,170
definitionB6Ng01-220M09.b B6Ng01-220M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,840,594 - 83,841,546)(83,731,603 - 83,732,760)
sequence
gaattcctgggggcaagatttactgaggtacctttgctttggggctcaac
tgaagcctctatgtcttaacagggcagcgatggaggcaggaaaataaatg
atgggcagtctttgtttctgcttgtgtggaagatagattgtgctcaggaa
gggaaatgacaaggcctgtggtaacattaattacatcatttataggctta
aaagttatcttataaaatgtccagtttctggctggattttacttacgtgc
aaaaatcataaaaatggttaagattcatgcctttaatcccagcacttggg
aggcagaggcaggcggatttctgagttcgaggccagcctggtctacagag
tgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaca
acaacaacaacaacaacaaaacccaaaaaaccaaaaccaaaactggttag
gattgagactgtgtcactccagaatacttcccacggtgacgctgagagct
agggtgttttaatcaacatggagtgaaagtggaagtggtgccggtctgcg
tctatcatctctatatgtgtgccctttagatactgtgccactgtggtaca
ctgcatgggcagggaggaggggggtgtgtctcttagatacagagtgttct
aaagaaggtcatttggaaggagttctcttccaagaactttagaattattt
tcaaaagttttcttgtgtatgtcataagagtctggagaatatttataggt
gtcatgtaaatcttataccttccattcaggaagaccagaaaagggctttg
gaacctaaaagttgtcagtgtgaggtgcatttggaatgtcagggtgtatt
gttcaatgcacaataattttgcccaaattgatacttatagttacttattt
tggaagtgtcttttttttataaaacttttttttaatggaactggaagtaa
ttaa
gaattccagcaccacgatggcaatgccacagaagcagagggaagttacta
atacatcgaattatgcaaaatgctctgaaatatgtttatatctctgaagt
ttggttagcaacataaaagcctttataagtggctgatttataggaaatac
tctatcaataaagaaaccatcaaaagtaaatgaagcactataaaaacctt
aacattaaagtctaggtacataaagtttactcatatgctgactgaaccca
tttttcagaaataggttttaaatgaagcatgcgactccacaggaagttgg
ggagtctcttgggtcagagcttatgagcaaaatgctctggtctttacttt
agcatactttctttttaacctcattcagctgcagaattttcactggtata
ttaaaggaagcctccagtaaactttgggcaattggtgtgatcctagaaaa
gtcattgaaaagtaactagagtgttacttatccaaagttacatttgggtt
aagctcaccactacagagaccttcaattcaggtctacactgtaacctttg
caagactctcataaagaccacctaggatggaaaagtaagaatgaatgcag
ttgtcctgcttaaggcagcaggtagtaactgtcatccaagaaagaaccga
gccagtacgcccgcccagtgaggcactttttccactgtgcttggggctac
agagcctagaggcaggtggtccaaatctactcatgggagagtctacagca
gtgttgcaattatctttattgctaaagacaaataagtaaatgtgtgtgtg
cctgtgggtgggactcttctgggaatatatcagactagggggctgagtga
aatatgctcccttttggagacactagcttactaggggagggattaatgag
ggtccctctctccagccccacctcttcctaacctaccacacagtcccatc
actacactcagagaagtatcaatgctcagtgagtaaaggagacacaccta
cctgatcaggatgaggggagggtgacttggccatagtctgctgggtgtgg
aacacaacacctacccttctcggtttccaaagctggcaagtgccacatga
agaagctccaaactggaactcctctagaaaggttccgccctgtgcaagtc
caaaggacgccattaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83840594_83841546
seq2: B6Ng01-220M09.b_43_996 (reverse)

seq1  TTAATCACTTACAGTTCCATTAAAAAAAAGTTTTTTAAAAAAAGAACACT  50
      ||||| |||| ||||||||||||||||||||||| ||||||||  |||||
seq2  TTAATTACTTCCAGTTCCATTAAAAAAAAGTTTTATAAAAAAAAGACACT  50

seq1  TCC-AAATAAGTAACTATAAGTAATCAATTTGGGCAAATCTATTGTGCAT  99
      ||| |||||||||||||||||| |||||||||||||||  ||||||||||
seq2  TCCAAAATAAGTAACTATAAGT-ATCAATTTGGGCAAAATTATTGTGCAT  99

seq1  TGAACACTACACCTTGACATTCCAACTGCACCTCACACTGACAACTTTTA  149
      |||||| |||||| ||||||||||| ||||||||||||||||||||||||
seq2  TGAACAATACACCCTGACATTCCAAATGCACCTCACACTGACAACTTTTA  149

seq1  GGCTCCAAAGCCCTTTTCTGGTCTTCCTGAATGGAAGGTATAAGATTTAC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAAAGCCCTTTTCTGGTCTTCCTGAATGGAAGGTATAAGATTTAC  199

seq1  ATGACACCTATAAATATTCTCCAGACTCTTATGACATACACAAGAAAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCTATAAATATTCTCCAGACTCTTATGACATACACAAGAAAACT  249

seq1  TTTGAAAATAATTCT-AAGTTCTTGGAAGAGAACTCCTTCCAAATGACCT  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATAATTCTAAAGTTCTTGGAAGAGAACTCCTTCCAAATGACCT  299

seq1  TCTTTAGAACACTCTGTATCTAAGAGACACACCCCCCTCCTCCCTGCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAACACTCTGTATCTAAGAGACACACCCCCCTCCTCCCTGCCCA  349

seq1  TGCAGTGTACCACAGTGGCACAGTATCTAAAGGGCACACATATAGAGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTACCACAGTGGCACAGTATCTAAAGGGCACACATATAGAGATG  399

seq1  ATAGACGCAGACCGGCACCACTTCCACTTTCACTCCATGTTGATTAAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACGCAGACCGGCACCACTTCCACTTTCACTCCATGTTGATTAAAAC  449

seq1  ACCCTAGCTCTCAGCGTCACCGTGGGAAGTATTCTGGAGTGACACAGTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGCTCTCAGCGTCACCGTGGGAAGTATTCTGGAGTGACACAGTCT  499

seq1  CAATCCTAACCAGTTTTGGTTTTGGTTTTTTGGGTTTTGTTGTTGTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAACCAGTTTTGGTTTTGGTTTTTTGGGTTTTGTTGTTGTTGTT  549

seq1  GTTGTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA  599

seq1  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC  649

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCATGAATCTTAACCATTTTTATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCATGAATCTTAACCATTTTTATGA  699

seq1  TTTTTGCACGTAAGTAAAATCCAGCCAGAAACTGGACATTTTATAAGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCACGTAAGTAAAATCCAGCCAGAAACTGGACATTTTATAAGATA  749

seq1  ACTTTTAAGCCTATAAATGATGTAATTAATGTTACCACAGGCCTTGTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGCCTATAAATGATGTAATTAATGTTACCACAGGCCTTGTCAT  799

seq1  TTCCCTTCCTGAGCACAATCTATCTTCCACACAAGCAGAAACAAAGACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCTGAGCACAATCTATCTTCCACACAAGCAGAAACAAAGACTG  849

seq1  CCCATCATTTATTTTCCTGCCTCCATCGCTGCCCTGTTAAGACATAGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATTTATTTTCCTGCCTCCATCGCTGCCCTGTTAAGACATAGAGG  899

seq1  CTTCAGTTGAGCCCCAAAGCAAAGGTACCTCAGTAAATCTTGCCCCCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGAGCCCCAAAGCAAAGGTACCTCAGTAAATCTTGCCCCCAGG  949

seq1  AATTC  953
      |||||
seq2  AATTC  954

seq1: chr3_83731603_83732760
seq2: B6Ng01-220M09.g_68_1237

seq1  GAATTCCAGCACCACGATGGCAATGCCACAGAAGCAGAGGGAAGTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCACGATGGCAATGCCACAGAAGCAGAGGGAAGTTACTA  50

seq1  ATACATCGAATTATGCAAAATGCTCTGAAATATGTTTATATCTCTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCGAATTATGCAAAATGCTCTGAAATATGTTTATATCTCTGAAGT  100

seq1  TTGGTTAGCAACATAAAAGCCTTTATAAGTGGCTGATTTATAGGAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGCAACATAAAAGCCTTTATAAGTGGCTGATTTATAGGAAATAC  150

seq1  TCTATCAATAAAGAAACCATCAAAAGTAAATGAAGCACTATAAAAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATAAAGAAACCATCAAAAGTAAATGAAGCACTATAAAAACCTT  200

seq1  AACATTAAAGTCTAGGTACATAAAGTTTACTCATATGCTGACTGAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAAGTCTAGGTACATAAAGTTTACTCATATGCTGACTGAACCCA  250

seq1  TTTTTCAGAAATAGGTTTTAAATGAAGCATGCGACTCCACAGGAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAATAGGTTTTAAATGAAGCATGCGACTCCACAGGAAGTTGG  300

seq1  GGAGTCTCTTGGGTCAGAGCTTATGAGCAAAATGCTCTGGTCTTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCTTGGGTCAGAGCTTATGAGCAAAATGCTCTGGTCTTTACTTT  350

seq1  AGCATACTTTCTTTTTAACCTCATTCAGCTGCAGAATTTTCACTGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTTTCTTTTTAACCTCATTCAGCTGCAGAATTTTCACTGGTATA  400

seq1  TTAAAGGAAGCCTCCAGTAAACTTTGGGCAATTGGTGTGATCCTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAGCCTCCAGTAAACTTTGGGCAATTGGTGTGATCCTAGAAAA  450

seq1  GTCATTGAAAAGTAACTAGAGTGTTACTTATCCAAAGTTACATTTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAAAAGTAACTAGAGTGTTACTTATCCAAAGTTACATTTGGGTT  500

seq1  AAGCTCACCACTACAGAGACCTTCAATTCAGGTCTACACTGTAACCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACCACTACAGAGACCTTCAATTCAGGTCTACACTGTAACCTTTG  550

seq1  CAAGACTCTCATAAAGACCACCTAGGATGGAAAAGTAAGAATGAATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCTCATAAAGACCACCTAGGATGGAAAAGTAAGAATGAATGCAG  600

seq1  TTGTCCTGCTTAAGGCAGCAGGTAGTAACTGTCATCCAAGAAAGAACCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGCTTAAGGCAGCAGGTAGTAACTGTCATCCAAGAAAGAACCGA  650

seq1  GCCAGTACGCCCGCCCAGTGAGGCACTTTTTCCACTGTGCTTGGGGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTACGCCCGCCCAGTGAGGCACTTTTTCCACTGTGCTTGGGGCTAC  700

seq1  AGAGCCTAGAGGCAGGTGGTCCAAATCTACTCATGGGAGAGTCTACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAGAGGCAGGTGGTCCAAATCTACTCATGGGAGAGTCTACAGCA  750

seq1  GTGTTGCAATTATCTTTATTGCTAAAGACAAATAAGTAAATGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCAATTATCTTTATTGCTAAAGACAAATAAGTAAATGTGTGTGTG  800

seq1  CCTGTGGGTGGGACTCTTCTGGGAATATATCAGACTA-GGGGCTGAGTGA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGTGGGTGGGACTCTTCTGGGAATATATCAGACTAGGGGGCTGAGTGA  850

seq1  AATATGCTCCCTTTTGGAGACACTAGCTTACTAGGGGAGGGATTAAATGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATATGCTCCCTTTTGGAGACACTAGCTTACTAGGGGAGGGATT-AATGA  899

seq1  GGGTCCCTCTCTCCAGCCCCCACCTCTTCCTAACCTACCACACAGTCCCA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGTCCCTCTCTCCAG-CCCCACCTCTTCCTAACCTACCACACAGTCCCA  948

seq1  TCACTACACTCAGAGAAGTATCAATGCTCAGTGAG--AAAGAGACACACC  997
      |||||||||||||||||||||||||||||||||||  || ||||||||||
seq2  TCACTACACTCAGAGAAGTATCAATGCTCAGTGAGTAAAGGAGACACACC  998

seq1  TACCTGATCAGGATGAGGG--AGGTGACTTTGCCATAGTCTGCT-GGTGT  1044
      |||||||||||||||||||   |||||||| ||||||||||||| |||||
seq2  TACCTGATCAGGATGAGGGGAGGGTGACTTGGCCATAGTCTGCTGGGTGT  1048

seq1  -GAACACAACACCAACCCTTCTC-GTTTCCAAAGCCTGCAAGTG-CACAT  1091
       |||||||||||| ||||||||| |||||||||||  ||||||| |||||
seq2  GGAACACAACACCTACCCTTCTCGGTTTCCAAAGCTGGCAAGTGCCACAT  1098

seq1  GAAG-AGCTCCCAAACTGG-ACTCCTC-AG-AAGGTT-CGCCC--TGCAA  1134
      |||| |||| ||||||||| ||||||| || |||||| |||||  |||||
seq2  GAAGAAGCT-CCAAACTGGAACTCCTCTAGAAAGGTTCCGCCCTGTGCAA  1147

seq1  GTCACAGAGGACGCCATTAAGCAT  1158
      ||| || |||||||||||| ||||
seq2  GTC-CAAAGGACGCCATTAGGCAT  1170