BAC Information

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BAC

Clone NameB6Ng01-220O02
Chromosome3 (Build37)
Map Location 92,515,256 - 92,516,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e
Downstream geneLce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220O02.bB6Ng01-220O02.g
ACCGA036327GA036328
length8041,185
definitionB6Ng01-220O02.b B6Ng01-220O02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttaaacttgtttgggatttctattttttcttataatccctagt
tgaacacattcaccccgtggacattggtgatgcataagccctctgacgag
catcttcattgatgtctatgcttaggaacagatattcctaaagacttgca
tcaccctaaaggaacctaaacctctgaggcagagtgaggtatgtgtggtc
acatgaccttgaagagttattcactgtatcaactgggttgactttattct
cttgctcaggttattacaaaagctttagttactgggagaggtcaggaact
ggtccctgatttacccaggggcagttatgccaggctcaccttgggatttc
taggatgatgtggctgacatgggagctagtccacatatctaccagtgggc
aaggcaacacccagatcctaaactgacttgcttgagcgtagtcatgagtg
agtagcatgcttgctggaagaagaatagaatctagcctagagtgtgatat
ctggagacttaaacctgaagccactgtgagtatcatggctagtaaactgt
ggggagtctgagggttttagttatcaggtgtgtagtgagagacacaagga
gcatcaagactaagaaaactccaaggttgcagttgtggcatagcttgtgg
tttatccaactgctctctaaattacagttaggatatatgcaatgagaggg
gaaagcatgcctggttctgaatcctagacaactatccaggagcccaatga
ggtcataaatttttgaggaaaatttaccacaatcccatttactttctagt
agct
gaattccacataaacaccatgagacactgaaacttatagaggagaaagta
gggaaaagccttgaagatatgggtacaggggaaaaattcctgaataggac
agcaatggcttgtgttgtaagatcgagaattgataaatgggacctcataa
aggtgcaaagcttctgcaaggcaaaagacatcgtcaataagacaaaaaga
ccaccaacatgttgggaaaggatcttcacctatcctaaatcagatagggg
acttatatccaatacatataaagaactgaagagggtggactccagaaaat
caaataacccccttaaaagatggggctcagagctgaacaaagaattctca
cccgaggaatactgaaaggctgagaaatacctgaaaaaatgttcaacatc
cttaatcatcagagaaatgcaaatcaatacaaccctgagagtccacctca
taccagtcagaatggctaagaccaaaaattcaggtgacagcagatgctgg
tgaggatgtggagaaagaggaacactcctccattgttggtggaatagcaa
gcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattgg
acatagtactaccagaggatcccgcaatacctctcctgggcatatatcca
aaagatggtccaaccagtaagaaggacacatggtccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgcccctcaa
cagaggaatggatacagaaaatgtggtacatttatacaatggagtactac
tcagctattaaaaagaatgaatttattaaattcctaggcaaatggatgga
tctggagggcatcatcctgagtgaggtaacccaatcataaaagaactcac
acaatatgtactcactgataagtggatattagcccagaaacttaaatact
cagatacagatacaatttgctaaacacatgaactcagaagtacgagacca
agtgtgacactttgccccttcttagatgggaacaaacacccatgcaggag
tacagagacacagtttgagctaagatgaagatgaacttctagagactgcc
aatatccgggaatcattccatatcagctcctatgctgaaccattgccata
tcctagcaggattggtttgaaaggaaccccctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92515256_92516048
seq2: B6Ng01-220O02.b_45_847

seq1  GAATTCCTTAAACTTGTTTGGGATTTCTATTTTTTCTTATAATCCCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAACTTGTTTGGGATTTCTATTTTTTCTTATAATCCCTAGT  50

seq1  TGAACACATTCACCCCGTGGACATTGGTGATGCATAAGCCCTCTGACGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATTCACCCCGTGGACATTGGTGATGCATAAGCCCTCTGACGAG  100

seq1  CATCTTCATTGATGTCTATGCTTAGGAACAGATATTCCTAAAGACTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATTGATGTCTATGCTTAGGAACAGATATTCCTAAAGACTTGCA  150

seq1  TCACCCTAAAGGAACCTAAACCTCTGAGGCAGAGTGAGGTATGTGTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTAAAGGAACCTAAACCTCTGAGGCAGAGTGAGGTATGTGTGGTC  200

seq1  ACATGACCTTGAAGAGTTATTCACTGTATCAACTGGGTTGACTTTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCTTGAAGAGTTATTCACTGTATCAACTGGGTTGACTTTATTCT  250

seq1  CTTGCTCAGGTTATTACAAAAGCTTTAGTTACTGGGAGAGGTCAGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGGTTATTACAAAAGCTTTAGTTACTGGGAGAGGTCAGGAACT  300

seq1  GGTCCCTGATTTACCCAGGGGCAGTTATGCCAGGCTCACCTTGGGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGATTTACCCAGGGGCAGTTATGCCAGGCTCACCTTGGGATTTC  350

seq1  TAGGATGATGTGGCTGACATGGGAGCTAGTCCACATATCTACCAGTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGATGTGGCTGACATGGGAGCTAGTCCACATATCTACCAGTGGGC  400

seq1  AAGGCAACACCCAGATCCTAAACTGACTTGCTTGAGCGTAGTCATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACACCCAGATCCTAAACTGACTTGCTTGAGCGTAGTCATGAGTG  450

seq1  AGTAGCATGCTTGCTGGAAGAAGAATAGAATCTAGCCTAGAGTGTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATGCTTGCTGGAAGAAGAATAGAATCTAGCCTAGAGTGTGATAT  500

seq1  CTGGAGACTTAAACCTGAAGCCACTGTGAGTATCATGGCTAGTAAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACTTAAACCTGAAGCCACTGTGAGTATCATGGCTAGTAAACTGT  550

seq1  GGGGAGTCTGAGGGTTTTAGTTATCAGGTGTGTAGTGAGAGACACAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCTGAGGGTTTTAGTTATCAGGTGTGTAGTGAGAGACACAAGGA  600

seq1  GCATCAAGACTAAGAAA--CCCAAGGTTGCAGTTGTGGCATAGCTTGTGG  648
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  GCATCAAGACTAAGAAAACTCCAAGGTTGCAGTTGTGGCATAGCTTGTGG  650

seq1  -TTATCCAACTGCTCTCT-AATTACAGTTAGGATATATGCAATGAGAGGG  696
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATCCAACTGCTCTCTAAATTACAGTTAGGATATATGCAATGAGAGGG  700

seq1  G-AAGCATGCCTGGTTCTGAATCCTAGACAACTATCCA-GAG-CCAATGA  743
      | |||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GAAAGCATGCCTGGTTCTGAATCCTAGACAACTATCCAGGAGCCCAATGA  750

seq1  GGTCATAAATTTTTGAGGAAAATTTACCACAATCACA-TTACTT--CAGT  790
      |||||||||||||||||||||||||||||||||| || ||||||   |||
seq2  GGTCATAAATTTTTGAGGAAAATTTACCACAATCCCATTTACTTTCTAGT  800

seq1  AGC  793
      |||
seq2  AGC  803