BAC Information

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BAC

Clone NameB6Ng01-221J18
Chromosome3 (Build37)
Map Location 155,562,277 - 155,563,444
singlet/doubletsinglet
Overlap genenone
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221J18.bB6Ng01-221J18.g
ACCGA036857GA036858
length1,1581,014
definitionB6Ng01-221J18.b B6Ng01-221J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtcagctttctcatcagcaaccgtgagaaaggaaggagaaca
tcaggcaggactcaggaataatcgccagccctccttatactgtcttttcc
tctatttatatacaaggtaaattgctagtctctctttatttaagtaaaat
gagggaaatatcctgctcctgcttgcctttctagatcatcaaaacaacta
tggtacagttccttaaaagcccctttccatgagggtggatgactaactac
tggtggtcagcaaccaacaagggagatttaaatgcagtagaaaattggct
tcaaagaacctgtccattggcttcaatattcaagcatatgacagtcacaa
ataaacaatgcatatagtacttattatgaaagggaagactaaatacatta
ccacacaaggcacccttttccatctacctcattgagcatgaaaacgtaca
aatacatccctgttatggtcttcactaacaagttcatgggcactatcacc
cagtgggttttctttagtttcaattttaaaaagaaaaagaaaagaaaaaa
agggtaagaaaataaaaaagagactaagaaaataaacggaaaggatctag
cgtctcacaaacagtaggctattgtacagcactatctcactgtgcaaaat
tagctcagctttccaatgttaagactgtgtcctatcgagcataaggagca
aattctgagtctcccaaggcccctcctttatctggctggctgagtgacca
cagcttagggatcttttccctttgtctcactgcaggtgagtttaccaagt
gcacttgaaaagcacagagtctatgacaactccataccaatcccagaaac
atctacagatccaagggattcctgtcctcatctgcaactgtcacggcact
gacatgggcatctctaatcaaaagcatcaacttcacaaagattactaatt
tttatagaggattcattaaaatagataaaactgaagaagtccttagccat
tgttcctgaacttttctctgtcccccacttctttaccctgcggttaactg
atttcatgtggctcaatactaacctatcatctgctgctgagcactcttcc
ctatgctagcccagcttaaatatagtaggtcagttagggtcatctatcat
aatttcta

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggtgaagtg
ggcgttctgggttctgatgatggtgagtgctcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtccccgcctcagaagctctgtggctcttgttcggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgctgccccagaa
tctctgcgactctctcgcccgtcccagaaacggctggcactctgtatttc
cacacggtcacccgtgcagcctgccctccgcggagtcccggagccaagaa
ggctcccgccggcgcctgtgccacaaacctctcatgctgggcagaccccc
gtgctctcaccaggaaggtggccggctatctggagctgaagatggcgccg
ccccagaagctctgcgactcctcacccgtccagaaatggctggcactctg
tattccacatgttcacccgtgcagcttgccctccgcggagtcccggagtc
caagaatggcttctcgtccggcggcctgtgccacatacctcttcagctgg
gccagacccccaatgctcctcaccaggaaaggtggcccggcctattctgg
gagctgaatatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155562277_155563444
seq2: B6Ng01-221J18.b_45_1202 (reverse)

seq1  TAGAATTTATGATAAGATGACCCATAACTGACCCTACTATATTTAAGCCT  50
      ||||| ||||||| ||||||||| ||||||| ||||||||||||||| ||
seq2  TAGAAATTATGAT-AGATGACCC-TAACTGA-CCTACTATATTTAAG-CT  46

seq1  GGGCTAGCCATAGGGGAAAGAGTGCTCAAGCAGCAGATGATAAGGTTAGG  100
      ||||||| |||||||  |||||||||| ||||||||||||| |||||| |
seq2  GGGCTAG-CATAGGG--AAGAGTGCTC-AGCAGCAGATGAT-AGGTTA-G  90

seq1  TATTTGAGCCACATGAAATCAGTTTAACCGCCAGGGT-AAGGAGTGGGGG  149
      || ||||||||||||||||||| ||||||| |||||| ||| ||||||||
seq2  TA-TTGAGCCACATGAAATCAG-TTAACCG-CAGGGTAAAGAAGTGGGGG  137

seq1  ACAGAGAAAAGTTCAGGAAC-ATGGCTAAGGACTTCTTCAGTTTTATCTA  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGAGAAAAGTTCAGGAACAATGGCTAAGGACTTCTTCAGTTTTATCTA  187

seq1  -TTTAATGAATCCTCTATAAAATTTAGTAATCTTTGTGAAGTTGATGCTT  247
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTAATGAATCCTCTATAAAAATTAGTAATCTTTGTGAAGTTGATGCTT  237

seq1  TTGATTAGAGATGCCCATGTCAGTGCCGTGACAGTTGCAGATGAGGACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGAGATGCCCATGTCAGTGCCGTGACAGTTGCAGATGAGGACAG  287

seq1  GAATCCCTTGGATCTGTAGATGTTTCTGGGATTGGTATGGAGTTGTCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTTGGATCTGTAGATGTTTCTGGGATTGGTATGGAGTTGTCATA  337

seq1  GACTCTGTGCTTTTCAAGTGCACTTGGTAAACTCACCTGCAGTGAGACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGCTTTTCAAGTGCACTTGGTAAACTCACCTGCAGTGAGACAA  387

seq1  AGGGAAAAGATCCCTAAGCTGTGGTCACTCAGCCAGCCAGATAAAGGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGATCCCTAAGCTGTGGTCACTCAGCCAGCCAGATAAAGGAGG  437

seq1  GGCCTTGGGAGACTCAGAATTTGCTCCTTATGCTCGATAGGACACAGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGGAGACTCAGAATTTGCTCCTTATGCTCGATAGGACACAGTCT  487

seq1  TAACATTGGAAAGCTGAGCTAATTTTGCACAGTGAGATAGTGCTGTACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGGAAAGCTGAGCTAATTTTGCACAGTGAGATAGTGCTGTACAA  537

seq1  TAGCCTACTGTTTGTGAGACGCTAGATCCTTTCCGTTTATTTTCTTAGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTACTGTTTGTGAGACGCTAGATCCTTTCCGTTTATTTTCTTAGTC  587

seq1  TCTTTTTTATTTTCTTACCCTTTTTTTCTTTTCTTTTTCTTTTTAAAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATTTTCTTACCCTTTTTTTCTTTTCTTTTTCTTTTTAAAATT  637

seq1  GAAACTAAAGAAAACCCACTGGGTGATAGTGCCCATGAACTTGTTAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGAAAACCCACTGGGTGATAGTGCCCATGAACTTGTTAGTGA  687

seq1  AGACCATAACAGGGATGTATTTGTACGTTTTCATGCTCAATGAGGTAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAACAGGGATGTATTTGTACGTTTTCATGCTCAATGAGGTAGAT  737

seq1  GGAAAAGGGTGCCTTGTGTGGTAATGTATTTAGTCTTCCCTTTCATAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGTGCCTTGTGTGGTAATGTATTTAGTCTTCCCTTTCATAATA  787

seq1  AGTACTATATGCATTGTTTATTTGTGACTGTCATATGCTTGAATATTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATATGCATTGTTTATTTGTGACTGTCATATGCTTGAATATTGAA  837

seq1  GCCAATGGACAGGTTCTTTGAAGCCAATTTTCTACTGCATTTAAATCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGACAGGTTCTTTGAAGCCAATTTTCTACTGCATTTAAATCTCC  887

seq1  CTTGTTGGTTGCTGACCACCAGTAGTTAGTCATCCACCCTCATGGAAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTTGCTGACCACCAGTAGTTAGTCATCCACCCTCATGGAAAGG  937

seq1  GGCTTTTAAGGAACTGTACCATAGTTGTTTTGATGATCTAGAAAGGCAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAAGGAACTGTACCATAGTTGTTTTGATGATCTAGAAAGGCAAG  987

seq1  CAGGAGCAGGATATTTCCCTCATTTTACTTAAATAAAGAGAGACTAGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGGATATTTCCCTCATTTTACTTAAATAAAGAGAGACTAGCAA  1037

seq1  TTTACCTTGTATATAAATAGAGGAAAAGACAGTATAAGGAGGGCTGGCGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGTATATAAATAGAGGAAAAGACAGTATAAGGAGGGCTGGCGA  1087

seq1  TTATTCCTGAGTCCTGCCTGATGTTCTCCTTCCTTTCTCACGGTTGCTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTGAGTCCTGCCTGATGTTCTCCTTCCTTTCTCACGGTTGCTGA  1137

seq1  TGAGAAAGCTGACCAGAATTC  1168
      |||||||||||||||||||||
seq2  TGAGAAAGCTGACCAGAATTC  1158


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