BAC Information

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BAC

Clone NameB6Ng01-221M19
Chromosome3 (Build37)
Map Location 88,570,253 - 88,752,918
singlet/doubletdoublet
Overlap geneSyt11, 5830417I10Rik, Msto1, Dap3
Upstream gene3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1
Downstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M19.bB6Ng01-221M19.g
ACCGA036990GA036991
length8091,116
definitionB6Ng01-221M19.b B6Ng01-221M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,752,110 - 88,752,918)(88,570,253 - 88,571,334)
sequence
gaattcagggcatgtgatgttaaaaccccaacgtttgatctactcatttt
tagtctcccacaaaaagcaaagcaaaattttagaggaatggcaccttaag
tttcctttcttatctgtgaattcttacctttgtgattcaggggaaattta
aacattactgcgttccattcatctccagaacccattcaattaatattcag
tctttttttggaataggggttaaattgtcttttgagtggttgtttatttg
tttgttttgacagtctcactctttagcccaagcttgcctgaaactctgac
agtcatcctgtcttagcctctttagaggttggattataggcatgaaccca
tacctggttttcagataacccaacctttccctattggctgtatgcattgg
ggattgattatctttgtgtttccttctttgagttaaagagacaatcagcc
ttaattgactagctgtgaagttacttttgctaaccaagcccatgcagtct
acccagggttgcaggaatctttcttcagtagcttcctgtgtgcaactttg
tataggtgtgtgcttgcatgtgtgcagactgtccgactgatttacagggt
ctatctcaaaggacatggaaatgttaaaatcagtgtcacatacttaaata
ctaggactagaaagcttgaagctataatctcaacactccacaaagtggag
gcaggaggatggaaacttggaggtcatccacagctatgcagcaaagtctt
gactagcctgagttccgtgagacagtctcagaacaacagtggggttgggg
tggggggca
gaattcttctgacttccacatgtacttttttttcttgtttttaattcttt
ttgagacagggtttctctgtatagccctggctgtcctggaactcactttg
tagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccga
gtgctgggattaaagacgtgcgccaccacgcccggctctcatgtacttct
taaaacataattaagtctatgcacacatgaataaagaaataagattaaaa
aaatttaaagtgcaccgttaacaatagaaaagcaggctaggtgtggtggc
ataggccgttgatcctagcacttgggaggcaaaggcaggcatatttttgt
gagttcaagaccagcctgtctacaaacagttctgggacagccaggaatgt
tacacagagaaaccctgtattgggggaaaaacgaaaagaaaagagaagaa
aagagaagagaagagaagaaaagaaaagaaaagaaaagcagagtgcaagt
gctagaaaccgtatcaagctaaggcccacggttcaatccccaacacccac
atgatggctaacaacctctgttaactgcaattccgggatatgtgatggtc
tttcctggtttctatgggcatgtaactgttggtgcacaggcatacttgca
ggcaaaacacccataaaaaaaaaaaaactaggtctcaccctgaaactctg
actggccttaaactttggaaaagatctgcctgcccgctgcctccccaggg
tgtcataactctgaaatcctttctatctcaatatttcaccactcggtgaa
agctgagaacccagtcggaaatgaacagtcttcattttgaaggaatatag
gtaaggagaaaaggccattattacacttgaaaacatgatgtgcaggccca
tggtcttatcccatacttccttgtttatatcacttcggtaaagaattaac
ttgttttttaggggagaaaggtttaggaaggcacgaattctcattccttg
cttggttcgcaacctggagttttctgaactttcaacaaaaaccttaataa
gtctgtggggtgtaacaacctgtggtggcattcgaaatggctccaattag
taggacattggctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88752110_88752918
seq2: B6Ng01-221M19.b_46_854 (reverse)

seq1  TGCCCCCCACCCCAACCCCACTGTTGTTCTGAGACTGTCTCACGGAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCCACCCCAACCCCACTGTTGTTCTGAGACTGTCTCACGGAACTC  50

seq1  AGGCTAGTCAAGACTTTGCTGCATAGCTGTGGATGACCTCCAAGTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTCAAGACTTTGCTGCATAGCTGTGGATGACCTCCAAGTTTCCA  100

seq1  TCCTCCTGCCTCCACTTTGTGGAGTGTTGAGATTATAGCTTCAAGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCCTCCACTTTGTGGAGTGTTGAGATTATAGCTTCAAGCTTTC  150

seq1  TAGTCCTAGTATTTAAGTATGTGACACTGATTTTAACATTTCCATGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTAGTATTTAAGTATGTGACACTGATTTTAACATTTCCATGTCCT  200

seq1  TTGAGATAGACCCTGTAAATCAGTCGGACAGTCTGCACACATGCAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGACCCTGTAAATCAGTCGGACAGTCTGCACACATGCAAGCAC  250

seq1  ACACCTATACAAAGTTGCACACAGGAAGCTACTGAAGAAAGATTCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTATACAAAGTTGCACACAGGAAGCTACTGAAGAAAGATTCCTGCA  300

seq1  ACCCTGGGTAGACTGCATGGGCTTGGTTAGCAAAAGTAACTTCACAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTAGACTGCATGGGCTTGGTTAGCAAAAGTAACTTCACAGCTA  350

seq1  GTCAATTAAGGCTGATTGTCTCTTTAACTCAAAGAAGGAAACACAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTAAGGCTGATTGTCTCTTTAACTCAAAGAAGGAAACACAAAGAT  400

seq1  AATCAATCCCCAATGCATACAGCCAATAGGGAAAGGTTGGGTTATCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCCCCAATGCATACAGCCAATAGGGAAAGGTTGGGTTATCTGAA  450

seq1  AACCAGGTATGGGTTCATGCCTATAATCCAACCTCTAAAGAGGCTAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTATGGGTTCATGCCTATAATCCAACCTCTAAAGAGGCTAAGAC  500

seq1  AGGATGACTGTCAGAGTTTCAGGCAAGCTTGGGCTAAAGAGTGAGACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACTGTCAGAGTTTCAGGCAAGCTTGGGCTAAAGAGTGAGACTGT  550

seq1  CAAAACAAACAAATAAACAACCACTCAAAAGACAATTTAACCCCTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACAAATAAACAACCACTCAAAAGACAATTTAACCCCTATTCC  600

seq1  AAAAAAAGACTGAATATTAATTGAATGGGTTCTGGAGATGAATGGAACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACTGAATATTAATTGAATGGGTTCTGGAGATGAATGGAACGC  650

seq1  AGTAATGTTTAAATTTCCCCTGAATCACAAAGGTAAGAATTCACAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTTTAAATTTCCCCTGAATCACAAAGGTAAGAATTCACAGATAA  700

seq1  GAAAGGAAACTTAAGGTGCCATTCCTCTAAAATTTTGCTTTGCTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAACTTAAGGTGCCATTCCTCTAAAATTTTGCTTTGCTTTTTGT  750

seq1  GGGAGACTAAAAATGAGTAGATCAAACGTTGGGGTTTTAACATCACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTAAAAATGAGTAGATCAAACGTTGGGGTTTTAACATCACATGC  800

seq1  CCTGAATTC  809
      |||||||||
seq2  CCTGAATTC  809

seq1: chr3_88570253_88571334
seq2: B6Ng01-221M19.g_69_1184

seq1  GAATTCTTCTGACTTCCACATGTACTTTTTTTTCTTGTTTTTAATTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGACTTCCACATGTACTTTTTTTTCTTGTTTTTAATTCTTT  50

seq1  TTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTG  100

seq1  TAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCGA  150

seq1  GTGCTGGGATTAAAGACGTGCGCCACCACGCCCGGCTCTCATGTACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGACGTGCGCCACCACGCCCGGCTCTCATGTACTTCT  200

seq1  TAAAACATAATTAAGTCTATGCACACATGAATAAAGAAATAAGATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATAATTAAGTCTATGCACACATGAATAAAGAAATAAGATTAAAA  250

seq1  AAATTTAAAGTGCACCGTTAACAATAGAAAAGCAGGCTAGGTGTGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGTGCACCGTTAACAATAGAAAAGCAGGCTAGGTGTGGTGGC  300

seq1  ATAGGCCGTTGATCCTAGCACTTGGGAGGCAAAGGCAGGCATATTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCGTTGATCCTAGCACTTGGGAGGCAAAGGCAGGCATATTTTTGT  350

seq1  GAGTTCAAGACCAGCCTGTCTACAAACAGTTCTGGGACAGCCAGGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGACCAGCCTGTCTACAAACAGTTCTGGGACAGCCAGGAATGT  400

seq1  TACACAGAGAAACCCTGTATTGGGGGAAAAACGAAAAGAAAAGAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTATTGGGGGAAAAACGAAAAGAAAAGAGAAGAA  450

seq1  AAGAGAAGAGAAGAGAAGAAAAGAAAAGAAAAGAAAAGCAGAGTGCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAGAAGAAAAGAAAAGAAAAGAAAAGCAGAGTGCAAGT  500

seq1  GCTAGAAACCGTATCAAGCTAAGGCCCACGGTTCAATCCCCAACACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAACCGTATCAAGCTAAGGCCCACGGTTCAATCCCCAACACCCAC  550

seq1  ATGATGGCTAACAACCTCTGTTAACTGCAATTCCGGGATATGTGATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTAACAACCTCTGTTAACTGCAATTCCGGGATATGTGATGGTC  600

seq1  TTTCCTGGTTTCTATGGGCATGTAACTGTTGGTGCACAGGCATACTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTTTCTATGGGCATGTAACTGTTGGTGCACAGGCATACTTGCA  650

seq1  GGCAAAACACCCAT---AAAAAAAAAACTAGGTCTCACCCTGAAACTCTG  697
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GGCAAAACACCCATAAAAAAAAAAAAACTAGGTCTCACCCTGAAACTCTG  700

seq1  ACTGGCCTTAAACTT--GGAAAGATCTGCCTG-CCGCTGCCTCCCCAGGG  744
      |||||||||||||||  | ||||||||||||| |||||||||||||||||
seq2  ACTGGCCTTAAACTTTGGAAAAGATCTGCCTGCCCGCTGCCTCCCCAGGG  750

seq1  TGTCATAACTCTGAAATCCTTTCTATCTCAATATTTCACCACTCGGTGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAACTCTGAAATCCTTTCTATCTCAATATTTCACCACTCGGTGAA  800

seq1  AGCTGAGAA-CCAGTCGGAAATGAACAGTCTTCATTTTGAAGGAATATAG  843
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAACCCAGTCGGAAATGAACAGTCTTCATTTTGAAGGAATATAG  850

seq1  GTAAGGAG-AAAGGCCATTATTAACACTTGAAAACATGATGTGCAGGCCC  892
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GTAAGGAGAAAAGGCCATTATT-ACACTTGAAAACATGATGTGCAGGCCC  899

seq1  AT-GTCTTAT-CCATACT--CCTGTTTATATCAC-TCGGT-AAGA--TAA  934
      || ||||||| |||||||  | |||||||||||| ||||| ||||  |||
seq2  ATGGTCTTATCCCATACTTCCTTGTTTATATCACTTCGGTAAAGAATTAA  949

seq1  C-TGTTTTT--AGGGAGAA---GTTAGG-AGGCAAGAA-TCCCAT--CCT  974
      | |||||||   |||||||    ||||| ||||| ||| || |||  | |
seq2  CTTGTTTTTTAGGGGAGAAAGGTTTAGGAAGGCACGAATTCTCATTCCTT  999

seq1  GCTT-GTTCGCAAACCTGAG-TTTCTG-ACATTTAAC-AAAAGCTAAATA  1020
      |||| |||||||| |  ||| |||||| || || ||| |||| || ||||
seq2  GCTTGGTTCGCAACCTGGAGTTTTCTGAACTTTCAACAAAAACCTTAATA  1049

seq1  AGTCTGT---GTGTAAACAACTGTGTGGCCAATCAGAATGGCTCCAA-TA  1066
      |||||||   ||||||  | |||||  | || ||  ||||||||||| ||
seq2  AGTCTGTGGGGTGTAACAACCTGTGGTGGCATTCGAAATGGCTCCAATTA  1099

seq1  TGAAGACA-TGGCTCTC  1082
        | |||| ||||||||
seq2  GTAGGACATTGGCTCTC  1116