BAC Information

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BAC

Clone NameB6Ng01-222C21
Chromosome3 (Build37)
Map Location 90,652,105 - 90,682,790
singlet/doubletdoublet
Overlap geneLOC635737
Upstream geneShe, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
Downstream geneEG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222C21.bB6Ng01-222C21.g
ACCGA037270GA037271
length1,0151,170
definitionB6Ng01-222C21.b B6Ng01-222C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,652,105 - 90,652,981)(90,681,605 - 90,682,790)
sequence
gaattccttctggctcagggtgtctgggtctccctcttttccagtgtgct
ggtgaaagattttgattatatttctttatggcttgttccatctgtgactt
ttaaggcagtttattttttcactctatttgaatccttgagaatcaaatgt
acaaggaaaggaaaagtctgtcaagcgtactggttcttgtctcttccctc
tatcagggtagtaagggggcatacacaataaaagaaaggacagggagtca
cttggtggggaaccattgtgtcacacatgtgtgtgataagaaactttcag
aaattgaaagaggctacaacactgtcagggcaaggcaggagggaaccaga
agaatggtatttaaaaaatgtcatagacttctggtttttttctggccctg
aagccaaccctctgtcacaggttccatgaccaaattgcactggaaatgag
ttaccctcccaggagtgtgtgcaagccagtgagcacaagtaagaccacca
ctgctgcttagaggaaccttgaggacacaggaactgagaagctaactggg
tcaggagtgtttcagtttctgtctgccccaggagatgatcctgtgtcaca
gagctacatatacaaataatgcctatagagagctgctctcccaggagtgc
ctacacatttgcgaacacaggtaagaccaccacttctcttcaaatttctg
gcccaaaaggggctctcccagagccattaggacataagaaccaaggatca
gcaggggccaggatccttctggtttctgtctgcatccaagtgctgaccct
gtatcacagctctccatacttaacttcctcccagctagaactggtcttcc
aggaatactgacacacaggctcgcaagatagacaagccacagtcagagac
agcaacaccagctaacaccagagataaccagatgataaaaggcaaggaca
ataacataagcaaataaaccaaggcaacttgcatcatcagaacccagttc
tcccagcacagcaag
gaattcaatgaatatgtagatctgataggaaataaattgaaaacaataca
taaggagagccataaaaaggcatccccgagtgtccatggccagggtttca
tcaacggaccaaacctctgataggatggccattgcagctgtctcagtagc
taatcagaagaccaagatgcttcaacctgaccaaccaaatatatggggaa
taccatgtcataaagcattacttgtaaaactacaagatgaacaataaagt
gttttgccattccagtgccttcatagtttttctgcttcctagacttgtcc
ttcacagtggcttgagcaataaacacacatgctctttcttgtacctaaag
acccctaattcatcatattgatatgattgacaacaacatatatgtctgct
ttgaacgactgagattcacctattctcatgaccccattttgtgcatgtac
ctaatatttgagtaggagtttccatgtttagcctgtcaatttgtccgttg
tcactgcaaaagcaacagcaactggtctccattcaatatggcagccattt
ccaatctaggaccaacccctcttcactgatcactgcacaagaattcttct
aaaacaatgtggcccctcttaagttttcttgaaatggtcccagttagtgc
tctatatgggaaggaataactgaactctaacagtgagagcaatggagcat
gagtgactacaaacctatgtctgaatccatattacccttctctgtgatct
tataataagtagctaccttggactatgtactctaagccaatgctaactgg
cctaggaactctggagatagtcttctctctccactccccatattgcctaa
taattaaagagagtacaggtaaaagtcatcatattttactctgtgtcaga
catcagaaaggaccactattcactagactttggtggaaaactcacctggc
tctcttacacactcacaatcttaattgtctaattataaaagaacatcatg
gaagagaagtgatcatccaagaccattctactagacatgagacaggaaaa
gtcatatcagttctgaagaatagaaagtacagagcacaaggtggagaaaa
ggatttctagaaaaatagtgatgacctaagtccgaacggtaaataaaaga
gtattctagaaactggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90652105_90652981
seq2: B6Ng01-222C21.b_44_920

seq1  GAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCTTTTCCAGTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCTTTTCCAGTGTGCT  50

seq1  GGTGAAAGATTTTGATTATATTTCTTTATGGCTTGTTCCATCTGTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGATTTTGATTATATTTCTTTATGGCTTGTTCCATCTGTGACTT  100

seq1  TTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAATGT  150

seq1  ACAAGGAAAGGAAAAGTCTGTCAAGCGTACTGGTTCTTGTCTCTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAGGAAAAGTCTGTCAAGCGTACTGGTTCTTGTCTCTTCCCTC  200

seq1  TATCAGGGTAGTAAGGGGGCATACACAATAAAAGAAAGGACAGGGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGTAGTAAGGGGGCATACACAATAAAAGAAAGGACAGGGAGTCA  250

seq1  CTTGGTGGGGAACCATTGTGTCACACATGTGTGTGATAAGAAACTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGGAACCATTGTGTCACACATGTGTGTGATAAGAAACTTTCAG  300

seq1  AAATTGAAAGAGGCTACAACACTGTCAGGGCAAGGCAGGAGGGAACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAGAGGCTACAACACTGTCAGGGCAAGGCAGGAGGGAACCAGA  350

seq1  AGAATGGTATTTAAAAAATGTCATAGACTTCTGGTTTTTTTCTGGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTATTTAAAAAATGTCATAGACTTCTGGTTTTTTTCTGGCCCTG  400

seq1  AAGCCAACCCTCTGTCACAGGTTCCATGACCAAATTGCACTGGAAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACCCTCTGTCACAGGTTCCATGACCAAATTGCACTGGAAATGAG  450

seq1  TTACCCTCCCAGGAGTGTGTGCAAGCCAGTGAGCACAAGTAAGACCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCCCAGGAGTGTGTGCAAGCCAGTGAGCACAAGTAAGACCACCA  500

seq1  CTGCTGCTTAGAGGAACCTTGAGGACACAGGAACTGAGAAGCTAACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTAGAGGAACCTTGAGGACACAGGAACTGAGAAGCTAACTGGG  550

seq1  TCAGGAGTGTTTCAGTTTCTGTCTGCCCCAGGAGATGATCCTGTGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTGTTTCAGTTTCTGTCTGCCCCAGGAGATGATCCTGTGTCACA  600

seq1  GAGCTACATATACAAATAATGCCTATAGAGAGCTGCTCTCCCAGGAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACATATACAAATAATGCCTATAGAGAGCTGCTCTCCCAGGAGTGC  650

seq1  CTACACATTTGCGAACACAGGTAAGACCACCACTTCTCTTCAAATTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATTTGCGAACACAGGTAAGACCACCACTTCTCTTCAAATTTCTG  700

seq1  GCCCAAAAGGGGCTCTCCCAGAGCCATTAGGACATAAGAACCAAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAAGGGGCTCTCCCAGAGCCATTAGGACATAAGAACCAAGGATCA  750

seq1  GCAGGGGCCAGGATCCTTCTGGTTTCTGTCTGCATCCAAGTGCTGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCCAGGATCCTTCTGGTTTCTGTCTGCATCCAAGTGCTGACCCT  800

seq1  GTATCACAGCTCTCCATACTTAACTTCCTCCCAGCTAGAACTGGTCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAGCTCTCCATACTTAACTTCCTCCCAGCTAGAACTGGTCTTCC  850

seq1  AGGAATACTGACACACAGGCTCGCAAG  877
      |||||||||||||||||||||||||||
seq2  AGGAATACTGACACACAGGCTCGCAAG  877

seq1: chr3_90681605_90682790
seq2: B6Ng01-222C21.g_66_1235 (reverse)

seq1  TTCT-CAGTTTCTAGGAATACTCTTTTTTATTTTCCCCTTTTGGACTTAT  49
      |||| ||||||||| ||||||||  ||||||||   || || ||||||| 
seq2  TTCTCCAGTTTCTA-GAATACTC--TTTTATTT--ACCGTTCGGACTTA-  44

seq1  GGTCATCACTATTTTTCTAGAAAT-CTTTTCTC--ACTTGTGCTTCTTGT  96
      |||||||||||||||||||||||| ||||||||   ||||||||   |||
seq2  GGTCATCACTATTTTTCTAGAAATCCTTTTCTCCACCTTGTGCT--CTGT  92

seq1  ACTTTCCTATTCTTTCAGAACTGATATTGACCTTTTTCTTGTTCTTCATT  146
      ||||| |||||| ||||||||||||| ||||  ||||| |||   ||| |
seq2  ACTTT-CTATTC-TTCAGAACTGATA-TGAC--TTTTCCTGT--CTCA-T  134

seq1  GTCTAGTTAGAATGGTCTTTGGATTGATCACCTTCTCTTCCATGATGTTC  196
      |||||| |||||||||| ||||| |||||| |||||||||||||||||||
seq2  GTCTAG-TAGAATGGTC-TTGGA-TGATCA-CTTCTCTTCCATGATGTTC  180

seq1  TTTTATAATTAGACAATTAAGATTGTGAGTGTGTAAGAGAGCCAGGTGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATTAGACAATTAAGATTGTGAGTGTGTAAGAGAGCCAGGTGAG  230

seq1  TTTTCCACCAAAGTCTAGTGAATAGTGGTCCTTTCTGATGTCTGACACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACCAAAGTCTAGTGAATAGTGGTCCTTTCTGATGTCTGACACAG  280

seq1  AGTAAAATATGATGACTTTTACCTGTACTCTCTTTAATTATTAGGCAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATGATGACTTTTACCTGTACTCTCTTTAATTATTAGGCAATA  330

seq1  TGGGGAGTGGAGAGAGAAGACTATCTCCAGAGTTCCTAGGCCAGTTAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGGAGAGAGAAGACTATCTCCAGAGTTCCTAGGCCAGTTAGCA  380

seq1  TTGGCTTAGAGTACATAGTCCAAGGTAGCTACTTATTATAAGATCACAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTAGAGTACATAGTCCAAGGTAGCTACTTATTATAAGATCACAGA  430

seq1  GAAGGGTAATATGGATTCAGACATAGGTTTGTAGTCACTCATGCTCCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTAATATGGATTCAGACATAGGTTTGTAGTCACTCATGCTCCATT  480

seq1  GCTCTCACTGTTAGAGTTCAGTTATTCCTTCCCATATAGAGCACTAACTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACTGTTAGAGTTCAGTTATTCCTTCCCATATAGAGCACTAACTG  530

seq1  GGACCATTTCAAGAAAACTTAAGAGGGGCCACATTGTTTTAGAAGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTTCAAGAAAACTTAAGAGGGGCCACATTGTTTTAGAAGAATTC  580

seq1  TTGTGCAGTGATCAGTGAAGAGGGGTTGGTCCTAGATTGGAAATGGCTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGTGATCAGTGAAGAGGGGTTGGTCCTAGATTGGAAATGGCTGC  630

seq1  CATATTGAATGGAGACCAGTTGCTGTTGCTTTTGCAGTGACAACGGACAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAATGGAGACCAGTTGCTGTTGCTTTTGCAGTGACAACGGACAA  680

seq1  ATTGACAGGCTAAACATGGAAACTCCTACTCAAATATTAGGTACATGCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGGCTAAACATGGAAACTCCTACTCAAATATTAGGTACATGCAC  730

seq1  AAAATGGGGTCATGAGAATAGGTGAATCTCAGTCGTTCAAAGCAGACATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGTCATGAGAATAGGTGAATCTCAGTCGTTCAAAGCAGACATA  780

seq1  TATGTTGTTGTCAATCATATCAATATGATGAATTAGGGGTCTTTAGGTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTTGTCAATCATATCAATATGATGAATTAGGGGTCTTTAGGTAC  830

seq1  AAGAAAGAGCATGTGTGTTTATTGCTCAAGCCACTGTGAAGGACAAGTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGCATGTGTGTTTATTGCTCAAGCCACTGTGAAGGACAAGTCT  880

seq1  AGGAAGCAGAAAAACTATGAAGGCACTGGAATGGCAAAACACTTTATTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGAAAAACTATGAAGGCACTGGAATGGCAAAACACTTTATTGT  930

seq1  TCATCTTGTAGTTTTACAAGTAATGCTTTATGACATGGTATTCCCCATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGTAGTTTTACAAGTAATGCTTTATGACATGGTATTCCCCATAT  980

seq1  ATTTGGTTGGTCAGGTTGAAGCATCTTGGTCTTCTGATTAGCTACTGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTGGTCAGGTTGAAGCATCTTGGTCTTCTGATTAGCTACTGAGA  1030

seq1  CAGCTGCAATGGCCATCCTATCAGAGGTTTGGTCCGTTGATGAAACCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAATGGCCATCCTATCAGAGGTTTGGTCCGTTGATGAAACCCTG  1080

seq1  GCCATGGACACTCGGGGATGCCTTTTTATGGCTCTCCTTATGTATTGTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGACACTCGGGGATGCCTTTTTATGGCTCTCCTTATGTATTGTTT  1130

seq1  TCAATTTATTTCCTATCAGATCTACATATTCATTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATTTCCTATCAGATCTACATATTCATTGAATTC  1170