BAC Information

Click to search

BAC

Clone NameB6Ng01-222K01
Chromosome3 (Build37)
Map Location 42,047,500 - 42,242,280
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222K01.bB6Ng01-222K01.g
ACCGA037595GA037596
length1,0361,107
definitionB6Ng01-222K01.b B6Ng01-222K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,047,500 - 42,048,316)(42,241,170 - 42,242,280)
sequence
gaattctttagctaaggatttatgctctactgatctatgagttctgtcag
atcagcagctttatcatcatgggtcctgttagtttgctaaactgctgttc
atagatctggctcatagaagttctccaggaagtacaatcggaacataaaa
ggaagaacatcagaggccacttcattcacccacctgaacaaaagttcaga
ggatcactgtgtccttgacttctgtaggtaaaggagcttcatttttttta
ttgctcaagatcatctttcatttcagagcatgcagctgttatcaagtcag
gtggcacatccctggtgttctggagatgaactcctaggctaactcctgag
gctgcccactctagtgagactttgactgagttaccaaggacagcttcttt
gtgccttaggccaggcaacattacattttggaaaaatattgttgcctact
tatgaaaatactgtaataatcaaatgacattattataccaggaattacag
tatttggcacacagtaggtttaacccatgcatcgcaaatattttaaccta
gaaattttcctgtccaaaggaaagacaaggacaaaaaaatggaacagaga
ttgaaggaaaggctgtccagagacctcccgacctaaggatccatcccatc
tgcagacaccaaacccccacactgttgctgttgccaagaagtacttgctg
atagtagcctgatatggctgttctctgagagggtctaccagcacctgacc
caatacagaagcaaatactcacagccaatcattggagtgagcccaggaac
cctaatggaagagctaggggaagaactgaaggagggtaagggaatagcaa
acccataggaagaacaatattaactaagtggaccccttagagctcccagg
gattaaaccacaaaccaaagagtatacatggagggatctatggctcagat
acatatatatcagaggatggatttatctgacatcaatgggaatggagaga
gctttgataccccagcataggggggatgctagagtt

gaattccttgttttttcatggtttctcaagtattttgactgtgtcatctg
tttagataacattgctgttctcgctgtttgcagtagctttgtttgaggtc
tgaaatctatctagcttctcaagtgtgtttgtagaagtcagtattctcct
gtcatgtgggtctcaaggatcaaacctaggtcacctggctttatgtcctt
agccccaaactaaatattttgaagtttgtttttgcctttggaggatatgg
ggctggccaagagagattcgtgattttattatttttttattttattttat
ttttatacctatagagcccatcttcttttggtaatattatctttctaaat
tatagtgaaatctactgtaagcttttaagggtcagtttgtaaagtattta
tattaaaatggttgacatatttaaccatgtttaacttccttgaaatatca
aagatgtacatggagacattaattctgaaaccttggaaaatgatttcctc
tctcaaggagacttgactgtcaacaataattgctgtcactgaatcaagtt
tataatgaattaatcaaaatgcacatgaaatgtgtttatatttataccaa
atcacaagaaattattttgctatacattttacagaaatgtattctgaggt
ggaataagaggaaaaattgatgaaacaaatgatctgagaatatgagtgct
acatcatgtctctacctgaagtaaagaagcatagaatttcaccagcttca
gttgctataagatatttgagaatcaatttccttgcacttgcataattctt
gcaaaccaatctaggcagccaaattttctcgttacactgtacataccata
tcgtaattctgggagcagagtctgaattagagatgattccatgtgttatt
agtatggtccctcaaaaaatattagtgtgattcctatcatacagagatgc
tcactaatctagcacaagtgcacacactctctgatagtgccttgcttgtt
ttattcatgtatacccattatataaaatgtatttgggatatatggtgaca
tcttctagctactctgttcatttcagtgaaagcacattttctcacactaa
agtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42047500_42048316
seq2: B6Ng01-222K01.b_44_860

seq1  GAATTCTTTAGCTAAGGATTTATGCTCTACTGATCTATGAGTTCTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCTAAGGATTTATGCTCTACTGATCTATGAGTTCTGTCAG  50

seq1  ATCAGCAGCTTTATCATCATGGGTCCTGTTAGTTTGCTAAACTGCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGCTTTATCATCATGGGTCCTGTTAGTTTGCTAAACTGCTGTTC  100

seq1  ATAGATCTGGCTCATAGAAGTTCTCCAGGAAGTACAATCGGAACATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTGGCTCATAGAAGTTCTCCAGGAAGTACAATCGGAACATAAAA  150

seq1  GGAAGAACATCAGAGGCCACTTCATTCACCCACCTGAACAAAAGTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACATCAGAGGCCACTTCATTCACCCACCTGAACAAAAGTTCAGA  200

seq1  GGATCACTGTGTCCTTGACTTCTGTAGGTAAAGGAGCTTCATTTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTGTGTCCTTGACTTCTGTAGGTAAAGGAGCTTCATTTTTTTTA  250

seq1  TTGCTCAAGATCATCTTTCATTTCAGAGCATGCAGCTGTTATCAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAGATCATCTTTCATTTCAGAGCATGCAGCTGTTATCAAGTCAG  300

seq1  GTGGCACATCCCTGGTGTTCTGGAGATGAACTCCTAGGCTAACTCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATCCCTGGTGTTCTGGAGATGAACTCCTAGGCTAACTCCTGAG  350

seq1  GCTGCCCACTCTAGTGAGACTTTGACTGAGTTACCAAGGACAGCTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCACTCTAGTGAGACTTTGACTGAGTTACCAAGGACAGCTTCTTT  400

seq1  GTGCCTTAGGCCAGGCAACATTACATTTTGGAAAAATATTGTTGCCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTAGGCCAGGCAACATTACATTTTGGAAAAATATTGTTGCCTACT  450

seq1  TATGAAAATACTGTAATAATCAAATGACATTATTATACCAGGAATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATACTGTAATAATCAAATGACATTATTATACCAGGAATTACAG  500

seq1  TATTTGGCACACAGTAGGTTTAACCCATGCATCGCAAATATTTTAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCACACAGTAGGTTTAACCCATGCATCGCAAATATTTTAACCTA  550

seq1  GAAATTTTCCTGTCCAAAGGAAAGACAAGGACAAAAAAATGGAACAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCCTGTCCAAAGGAAAGACAAGGACAAAAAAATGGAACAGAGA  600

seq1  TTGAAGGAAAGGCTGTCCAGAGACCTCCCGACCTAAGGATCCATCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAAAGGCTGTCCAGAGACCTCCCGACCTAAGGATCCATCCCATC  650

seq1  TGCAGACACCAAACCCCCACACTGTTGCTGTTGCCAAGAAGTACTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACACCAAACCCCCACACTGTTGCTGTTGCCAAGAAGTACTTGCTG  700

seq1  ATAGTAGCCTGATATGGCTGTTCTCTGAGAGGGTCTACCAGCACCTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGCCTGATATGGCTGTTCTCTGAGAGGGTCTACCAGCACCTGACC  750

seq1  CAATACAGAAGCAAATACTCACAGCCAATCATTGGAGTGAGCCCAGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAAGCAAATACTCACAGCCAATCATTGGAGTGAGCCCAGGAAC  800

seq1  CCTAATGGAAGAGCTAG  817
      |||||||||||||||||
seq2  CCTAATGGAAGAGCTAG  817


seq1: chr3_42241170_42242280
seq2: B6Ng01-222K01.g_70_1176 (reverse)

seq1  AGAAACCTTTAGTGTGAGAAAATTGTTGGTGTCACTGAAATGAACAGAGT  50
      ||||| |||||||||||||||||   || | |||||||||||||||||||
seq2  AGAAA-CTTTAGTGTGAGAAAAT--GTGCTTTCACTGAAATGAACAGAGT  47

seq1  AGCTAAGAAGGAATGTCACCATATAT-CCAAATACATTTTATAT-ATGGG  98
      |||| |||||  |||||||||||||| ||||||||||||||||| |||||
seq2  AGCT-AGAAG--ATGTCACCATATATCCCAAATACATTTTATATAATGGG  94

seq1  TAATACATG-ATAAAACAAGCAAGGCACTATCAAGAGGAGTGTGTGCAC-  146
      | ||||||| |||||||||||||||||||||| ||| |||||||||||| 
seq2  T-ATACATGAATAAAACAAGCAAGGCACTATC-AGA-GAGTGTGTGCACT  141

seq1  TGTGCTAGATTAGTGAGCATCTCTGTATGATAGGAATCACACTAATA-TT  195
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCTAGATTAGTGAGCATCTCTGTATGATAGGAATCACACTAATATTT  191

seq1  TTTGAGGGACCATACTAATAACACATGGAATCATCTCTAATTCAGACTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGACCATACTAATAACACATGGAATCATCTCTAATTCAGACTCT  241

seq1  GCTCCCAGAATTACGATATGGTATGTACAGTGTAACGAGAAAATTTGGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGAATTACGATATGGTATGTACAGTGTAACGAGAAAATTTGGCT  291

seq1  GCCTAGATTGGTTTGCAAGAATTATGCAAGTGCAAGGAAATTGATTCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATTGGTTTGCAAGAATTATGCAAGTGCAAGGAAATTGATTCTCA  341

seq1  AATATCTTATAGCAACTGAAGCTGGTGAAATTCTATGCTTCTTTACTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTATAGCAACTGAAGCTGGTGAAATTCTATGCTTCTTTACTTCA  391

seq1  GGTAGAGACATGATGTAGCACTCATATTCTCAGATCATTTGTTTCATCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACATGATGTAGCACTCATATTCTCAGATCATTTGTTTCATCAA  441

seq1  TTTTTCCTCTTATTCCACCTCAGAATACATTTCTGTAAAATGTATAGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTTATTCCACCTCAGAATACATTTCTGTAAAATGTATAGCAA  491

seq1  AATAATTTCTTGTGATTTGGTATAAATATAAACACATTTCATGTGCATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCTTGTGATTTGGTATAAATATAAACACATTTCATGTGCATTT  541

seq1  TGATTAATTCATTATAAACTTGATTCAGTGACAGCAATTATTGTTGACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTCATTATAAACTTGATTCAGTGACAGCAATTATTGTTGACAG  591

seq1  TCAAGTCTCCTTGAGAGAGGAAATCATTTTCCAAGGTTTCAGAATTAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTCCTTGAGAGAGGAAATCATTTTCCAAGGTTTCAGAATTAATG  641

seq1  TCTCCATGTACATCTTTGATATTTCAAGGAAGTTAAACATGGTTAAATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGTACATCTTTGATATTTCAAGGAAGTTAAACATGGTTAAATAT  691

seq1  GTCAACCATTTTAATATAAATACTTTACAAACTGACCCTTAAAAGCTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCATTTTAATATAAATACTTTACAAACTGACCCTTAAAAGCTTAC  741

seq1  AGTAGATTTCACTATAATTTAGAAAGATAATATTACCAAAAGAAGATGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTCACTATAATTTAGAAAGATAATATTACCAAAAGAAGATGGG  791

seq1  CTCTATAGGTATAAAAATAAAATAAAATAAAAAAATAATAAAATCACGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGGTATAAAAATAAAATAAAATAAAAAAATAATAAAATCACGAA  841

seq1  TCTCTCTTGGCCAGCCCCATATCCTCCAAAGGCAAAAACAAACTTCAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGGCCAGCCCCATATCCTCCAAAGGCAAAAACAAACTTCAAAA  891

seq1  TATTTAGTTTGGGGCTAAGGACATAAAGCCAGGTGACCTAGGTTTGATCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTTGGGGCTAAGGACATAAAGCCAGGTGACCTAGGTTTGATCC  941

seq1  TTGAGACCCACATGACAGGAGAATACTGACTTCTACAAACACACTTGAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCCACATGACAGGAGAATACTGACTTCTACAAACACACTTGAGA  991

seq1  AGCTAGATAGATTTCAGACCTCAAACAAAGCTACTGCAAACAGCGAGAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATAGATTTCAGACCTCAAACAAAGCTACTGCAAACAGCGAGAAC  1041

seq1  AGCAATGTTATCTAAACAGATGACACAGTCAAAATACTTGAGAAACCATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTTATCTAAACAGATGACACAGTCAAAATACTTGAGAAACCATG  1091

seq1  AAAAAACAAGGAATTC  1111
      ||||||||||||||||
seq2  AAAAAACAAGGAATTC  1107


| Home | SequenceCutter | Blast | Download |