BAC Information

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BAC

Clone NameB6Ng01-222L23
Chromosome3 (Build37)
Map Location 17,080,389 - 17,242,027
singlet/doubletdoublet
Overlap geneEG383936, LOC622737
Upstream geneYthdf3, LOC100040034, LOC100040059
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222L23.bB6Ng01-222L23.g
ACCGA037680GA037681
length9011,127
definitionB6Ng01-222L23.b B6Ng01-222L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,241,127 - 17,242,027)(17,080,389 - 17,081,514)
sequence
gaattctagagctagaacttaaataaagtggtctattttcttggttcttg
gttttctttcacagataatggtcaagatgaattattgaggaattaatttt
tgctgtgaatgaaaaatgtgttcatccatagaattttataacatgacctg
aaatggttggagaaaacacatcagaagcaaggcaactcctggctgtaact
ttctgacccctagctctaccaggagtgtctgagatactgttcatgaattt
agagtgtaaaggcctaaaatgacacctattctgttctgcactttcacagc
aattttatcaagtttatttgtaaatgaaatttgaagatttttatttaagc
aaaggaaacaaagagggaatttaaagaggttttgaattttccatgcacat
accataccaaattagcaacacctatataaaaatccctctacgtggaggta
caaaggatttgacagctgcttggttagaaactatgaccattttccattag
atactttggcaaatggttttaattatgcctcatcatttatggttaataat
ttcagtaaataaaaatgctggattcatgtattattttgggctctttttac
ttcttttttccctctgttttatttcttcctgcctccctccctcccacctc
tctccccgcctttctcctctctcctttcactttctttcttcatttctttg
ttcattcctttctctctttttctctctctttctttctgcctccctcctcc
cttttccttctttctttctttctttctctctttctttctttctctctctc
tctctctctctttctttctttctttctttctttctttctttctttctttc
cttctttcttccctttgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtga
t

gaattccataccagtctgatctacagagtcaatttcagtatagtcagaga
tgcacagaaaaatcctgtttcaaaaaaattaaaacaaaccaacaaaagaa
ggagcttccctttatctttatcatgtttgtgagggaactagtaaacaatc
cctcttagaggcttttgaaatctagaggaagcaacctagtaatctctgtc
aagcttgattctgaaggagatgcttaagtcaataattactaatctcatat
tcataccaacatccatctcagccagtgtttgtactattcctacttcttta
catgttaggccattctttaacaatacaggcaataaggaaacaccatggtc
attttccataaatcatggaaatgatggccacttttactaagtcaacaacc
agaaccagaggaacttatgagaggccacagtgttatatatggaaaaaagt
taatagccagactttttgatatttgaaaactcttatttctagataccaca
atgatgaaattaccttccagaaaaagtaccttaggcactacatggttatg
tttgtacaatgtctttaagaaggacttttgaagattgttcgtagtgacta
tataaatattttaagaaaatcattataatttattgttgattaaacttgca
gtaattgaacttagtttatgacacagaatcattttgatattcttatgttc
aaactgacataaaagtctatagaagaaagaaaacaaaatagtataccata
attatctgatacatgtatgaacttgaacatttttgacacaagcaaagaac
agctgagtagagcccatgtacatgcaaataaacatacacacacaaactat
aaatgtaagttttatttgccttatataattgacatctctgaggcttattg
cctgtgttagctacctaggcctagtcctggaagcttctagcctcagtata
atctaatctaggcataaaatgtttcagttttcagccactgagacatgttg
ctgaataaactcaatgttttcttagtcaattcttgactctactagctgga
tcactcaggctattctatctcacacctcctctttgccactagctgattca
agaagcctttttctctctgatctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17241127_17242027
seq2: B6Ng01-222L23.b_43_943 (reverse)

seq1  AACACACACAAACACACACACACACACACACACACAAAGGGAAGAAAGAA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACAAACACACACACACACACACACACACAAAGGGAAGAAAGAA  50

seq1  GGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAG  100

seq1  AGAGAGAGAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAGGAAAA  150

seq1  GGGAGGAGGGAGGCAGAAAGAAAGAGAGAGAAAAAGAGAGAAAGGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGGAGGCAGAAAGAAAGAGAGAGAAAAAGAGAGAAAGGAATGA  200

seq1  ACAAAGAAATGAAGAAAGAAAGTGAAAGGAGAGAGGAGAAAGGCGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAATGAAGAAAGAAAGTGAAAGGAGAGAGGAGAAAGGCGGGGAG  250

seq1  AGAGGTGGGAGGGAGGGAGGCAGGAAGAAATAAAACAGAGGGAAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGAGGGAGGGAGGCAGGAAGAAATAAAACAGAGGGAAAAAAGA  300

seq1  AGTAAAAAGAGCCCAAAATAATACATGAATCCAGCATTTTTATTTACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAGCCCAAAATAATACATGAATCCAGCATTTTTATTTACTGA  350

seq1  AATTATTAACCATAAATGATGAGGCATAATTAAAACCATTTGCCAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAACCATAAATGATGAGGCATAATTAAAACCATTTGCCAAAGTA  400

seq1  TCTAATGGAAAATGGTCATAGTTTCTAACCAAGCAGCTGTCAAATCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGAAAATGGTCATAGTTTCTAACCAAGCAGCTGTCAAATCCTTT  450

seq1  GTACCTCCACGTAGAGGGATTTTTATATAGGTGTTGCTAATTTGGTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCCACGTAGAGGGATTTTTATATAGGTGTTGCTAATTTGGTATGG  500

seq1  TATGTGCATGGAAAATTCAAAACCTCTTTAAATTCCCTCTTTGTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATGGAAAATTCAAAACCTCTTTAAATTCCCTCTTTGTTTCCTT  550

seq1  TGCTTAAATAAAAATCTTCAAATTTCATTTACAAATAAACTTGATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAATAAAAATCTTCAAATTTCATTTACAAATAAACTTGATAAAAT  600

seq1  TGCTGTGAAAGTGCAGAACAGAATAGGTGTCATTTTAGGCCTTTACACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAAAGTGCAGAACAGAATAGGTGTCATTTTAGGCCTTTACACTC  650

seq1  TAAATTCATGAACAGTATCTCAGACACTCCTGGTAGAGCTAGGGGTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATGAACAGTATCTCAGACACTCCTGGTAGAGCTAGGGGTCAGA  700

seq1  AAGTTACAGCCAGGAGTTGCCTTGCTTCTGATGTGTTTTCTCCAACCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAGCCAGGAGTTGCCTTGCTTCTGATGTGTTTTCTCCAACCATT  750

seq1  TCAGGTCATGTTATAAAATTCTATGGATGAACACATTTTTCATTCACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCATGTTATAAAATTCTATGGATGAACACATTTTTCATTCACAGC  800

seq1  AAAAATTAATTCCTCAATAATTCATCTTGACCATTATCTGTGAAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATTCCTCAATAATTCATCTTGACCATTATCTGTGAAAGAAAA  850

seq1  CCAAGAACCAAGAAAATAGACCACTTTATTTAAGTTCTAGCTCTAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACCAAGAAAATAGACCACTTTATTTAAGTTCTAGCTCTAGAATT  900

seq1  C  901
      |
seq2  C  901


seq1: chr3_17080389_17081514
seq2: B6Ng01-222L23.g_67_1193

seq1  GAATTCCATACCAGTCTGATCTACAGAGTCAATTTCAGTATAGTCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCAGTCTGATCTACAGAGTCAATTTCAGTATAGTCAGAGA  50

seq1  TGCACAGAAAAATCCTGTTTCAAAAAAATTAAAACAAACCAACAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAAAAATCCTGTTTCAAAAAAATTAAAACAAACCAACAAAAGAA  100

seq1  GGAGCTTCCCTTTATCTTTATCATGTTTGTGAGGGAACTAGTAAACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCCCTTTATCTTTATCATGTTTGTGAGGGAACTAGTAAACAATC  150

seq1  CCTCTTAGAGGCTTTTGAAATCTAGAGGAAGCAACCTAGTAATCTCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGAGGCTTTTGAAATCTAGAGGAAGCAACCTAGTAATCTCTGTC  200

seq1  AAGCTTGATTCTGAAGGAGATGCTTAAGTCAATAATTACTAATCTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGATTCTGAAGGAGATGCTTAAGTCAATAATTACTAATCTCATAT  250

seq1  TCATACCAACATCCATCTCAGCCAGTGTTTGTACTATTCCTACTTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAACATCCATCTCAGCCAGTGTTTGTACTATTCCTACTTCTTTA  300

seq1  CATGTTAGGCCATTCTTTAACAATACAGGCAATAAGGAAACACCATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAGGCCATTCTTTAACAATACAGGCAATAAGGAAACACCATGGTC  350

seq1  ATTTTCCATAAATCATGGAAATGATGGCCACTTTTACTAAGTCAACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATAAATCATGGAAATGATGGCCACTTTTACTAAGTCAACAACC  400

seq1  AGAACCAGAGGAACTTATGAGAGGCCACAGTGTTATATATGGAAAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGAGGAACTTATGAGAGGCCACAGTGTTATATATGGAAAAAAGT  450

seq1  TAATAGCCAGACTTTTTGATATTTGAAAACTCTTATTTCTAGATACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCCAGACTTTTTGATATTTGAAAACTCTTATTTCTAGATACCACA  500

seq1  ATGATGAAATTACCTTCCAGAAAAAGTACCTTAGGCACTACATGGTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAATTACCTTCCAGAAAAAGTACCTTAGGCACTACATGGTTATG  550

seq1  TTTGTACAATGTCTTTAAGAAGGACTTTTGAAGATTGTTCGTAGTGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAATGTCTTTAAGAAGGACTTTTGAAGATTGTTCGTAGTGACTA  600

seq1  TATAAATATTTTAAGAAAATCATTATAATTTATTGTTGATTAAACTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTTTAAGAAAATCATTATAATTTATTGTTGATTAAACTTGCA  650

seq1  GTAATTGAACTTAGTTTATGACACAGAATCATTTTGATATTCTTATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAACTTAGTTTATGACACAGAATCATTTTGATATTCTTATGTTC  700

seq1  AAACTGACATAAAAGTCTATAGAAGAAAGAAAACAAAATAGTATACCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACATAAAAGTCTATAGAAGAAAGAAAACAAAATAGTATACCATA  750

seq1  ATTATCTGATACATGTATGAACTTGAACATTTTTGACACAAGCAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGATACATGTATGAACTTGAACATTTTTGACACAAGCAAAGAAC  800

seq1  AGCTGAGTAGAGCCCATGTACATGCAAATAAACATACACACACAAACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTAGAGCCCATGTACATGCAAATAAACATACACACACAAACTAT  850

seq1  AAATGTAAGTTTTATTTGCCTTATATAATTGACATCTCTGAGGCTTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGTTTTATTTGCCTTATATAATTGACATCTCTGAGGCTTATTG  900

seq1  CCTGTGTTAGCTACCTAGGCCTAGTCCTGGAAGCTTCTAGCCTCAGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTAGCTACCTAGGCCTAGTCCTGGAAGCTTCTAGCCTCAGTATA  950

seq1  ATCTAATCTAGGCATAAAATGTTTTCAGTTTTCAGCCACTGAGACATGTT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTAATCTAGGCATAAAATG-TTTCAGTTTTCAGCCACTGAGACATGTT  999

seq1  GCTGAATAAACTCAATG-TTTCTTAGTC-ATTCTGAACTCTTACTAGCTG  1048
      ||||||||||||||||| |||||||||| |||||  |||| |||||||||
seq2  GCTGAATAAACTCAATGTTTTCTTAGTCAATTCTTGACTC-TACTAGCTG  1048

seq1  GTTCAACTCA-GCTATTCTATCTCAACACTCCTCTTTG-CACTAGCTGAT  1096
      | || ||||| ||||||||||||||   |||||||||| |||||||||||
seq2  GATC-ACTCAGGCTATTCTATCTCACACCTCCTCTTTGCCACTAGCTGAT  1097

seq1  TCAAAGAGGCTTTTCTCTCT-TGGTCTCTCT  1126
      || |||| || ||| ||||| || |||||||
seq2  TC-AAGAAGCCTTTTTCTCTCTGATCTCTCT  1127


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