BAC Information

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BAC

Clone NameB6Ng01-222O13
Chromosome3 (Build37)
Map Location 23,229,130 - 23,411,423
singlet/doubletdoublet
Overlap geneLOC100039548
Upstream geneLOC675593, LOC100040378, LOC623751
Downstream geneEG635702, EG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222O13.bB6Ng01-222O13.g
ACCGA037796GA037797
length844950
definitionB6Ng01-222O13.b B6Ng01-222O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,229,130 - 23,229,969)(23,410,483 - 23,411,423)
sequence
gaattctttgtttagctttaagccccattttttaatggggtcatttattt
tctggaatccaccttcttgacttctttgtatatattagatattagtcccc
tatctgatttaagataggtaaaaatccttttccaatctgttggtgacctt
tttatcttattgacagtgtcttttgccttacagaaactttgcaattttat
gaggtcccatttgtcgaatattgatcttacagcacaagtcattgctgttc
tattcaggatttttttccctgtggccatatctttgaggcttttccccact
ttctcctctataagtttcactgtctctggttttttttttttttttttttt
tttttgaggggggggttccaattcctctattcctttttttcccatttttt
attaggtatttagctcatttttatttccaatgctataccaaaagtccccc
atacccacccacccccactcccctacccacccactccccctttttggccc
tggcgttcccctgtactggggcatataaagtttgcaagtccagtgggcct
ctctttcaagtgatggcctattaggccatcttttgatacatatgcagcta
gagacaagagctccggggtactggttagttcataatgttgttccacctat
agggttacagttcccttttattttccttgggtgctttctctagtcctcca
ttgggggccctgtggtccattcaatacatgactgtgagcatccactttct
gtgtttgctaggccctgacatagtctcacaagagacagctatatctgatg
ttgctgtcactggtatatacagagcatcgtttgatccatttaga

gaattccagggccaggaagcaggtgtggctgggttggggagcaggtgaaa
gggggaggaaataggagattttcagagcagaaacttggaaaagggataac
atttgaaatgtaaataaataaaatatctaataaaaaagaaaatgacaaaa
acaaaaccaaaccaaacaaaaaaaccaaacaaaaaaacaaacaaaaaaca
atgaatttactctgtaatgtacaacaatgtccatattcatatcatataaa
agaatgcacatagatggtggggagatggcccagttccaaaattgatcaat
gaagaatgtgagggcagaaagacagacacagcactcaaatgaaaaaaatt
gtagcatctgtgtctgtaaccccagtatttatacagttagatgagttgca
ggcagcaagaggtaataatagttttatggcggaaaaatattcaagagaag
tttaaaaagggtcagagaatatcatggattttcgaacacagcagagttgg
gtcatttccatatataatctgacgcctacatgatacatgtatgattgagt
tggttctttattgctgtgtgaaagtataatgcaaagattaactatttaaa
agaaaaattacttactacttcataatttaggtggatcaagattattgaat
ggcctccccaaattgagttagggattcggataagactagagtcaaggtgt
tggttgaaagtattcacttcaacgaagaccctactgctacattccaacac
acagatttttgatttgattcagttccacaaggttactggatttgaaagtc
tcagttcttctatcaacatgagccaaaaaatcccatatgattctttaaca
taaagatttcatcatattaatattctcaaagaaagccatgggatgaagag
agaaggaagttagggctgggggctgtggagcctcaggtactattttagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23229130_23229969
seq2: B6Ng01-222O13.b_42_885

seq1  GAATTCTTTGTTTAGCTTTAAGCCCCATTTTTTAATGGGGTCATTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTTTAAGCCCCATTTTTTAATGGGGTCATTTATTT  50

seq1  TCTGGAATCCACCTTCTTGACTTCTTTGTATATATTAGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATCCACCTTCTTGACTTCTTTGTATATATTAGATATTAGTCCCC  100

seq1  TATCTGATTTAAGATAGGTAAAAATCCTTTTCCAATCTGTTGGTGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAAGATAGGTAAAAATCCTTTTCCAATCTGTTGGTGACCTT  150

seq1  TTTATCTTATTGACAGTGTCTTTTGCCTTACAGAAACTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTATTGACAGTGTCTTTTGCCTTACAGAAACTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTCGAATATTGATCTTACAGCACAAGTCATTGCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCGAATATTGATCTTACAGCACAAGTCATTGCTGTTC  250

seq1  TATTCAGGATTTTTTTCCCTGTGGCCATATCTTTGAGGCTTTTCCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGATTTTTTTCCCTGTGGCCATATCTTTGAGGCTTTTCCCCACT  300

seq1  TTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTTTTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTTTTTTTTTTTTTTTTTT  350

seq1  TTTTTGAGGGGGGGGTTCCAATTCCTCTATTCCTTTTTTTCCCATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGGGGGGGGTTCCAATTCCTCTATTCCTTTTTTTCCCATTTTTT  400

seq1  ATTAGGTATTTAGCTCATTTTTATTTCCAATGCTATACCAAAAGTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTAGCTCATTTTTATTTCCAATGCTATACCAAAAGTCCCCC  450

seq1  ATACCCACCCACCCCCACT-CCCTACCCACCCACTCCCCCTTTTTGGCCC  499
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCC  500

seq1  TGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGTGGGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGTGGGCCT  550

seq1  CTCTTTCAAGTGATGGCCTATTAGGCCATCTTTTGATACATATGCAGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAAGTGATGGCCTATTAGGCCATCTTTTGATACATATGCAGCTA  600

seq1  GAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTAT  650

seq1  AGGGTTACAGTTCCCTTT--ATTTCCTTGGGTGCTTTCTCTAGTTCCTCC  697
      ||||||||||||||||||   |||||||||||||||||||||| ||||||
seq2  AGGGTTACAGTTCCCTTTTATTTTCCTTGGGTGCTTTCTCTAG-TCCTCC  699

seq1  ATTGGGGGCCCTGTGGTCCATTCAATAGCTGACTGTGAGCATCCAC-TTC  746
      |||||||||||||||||||||||||||  ||||||||||||||||| |||
seq2  ATTGGGGGCCCTGTGGTCCATTCAATACATGACTGTGAGCATCCACTTTC  749

seq1  TGTGTTTGCTAGGCCCTGACATAGTCTCACAAGAGACAGCTATATCTGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCTAGGCCCTGACATAGTCTCACAAGAGACAGCTATATCTGAT  799

seq1  GTAGCTGTCACTGGTTTTATACAGAGC-TCG-TTGATCCACTTAGA  840
      || ||||||||||| | |||||||||| ||| |||||||| |||||
seq2  GTTGCTGTCACTGG-TATATACAGAGCATCGTTTGATCCATTTAGA  844


seq1: chr3_23410483_23411423
seq2: B6Ng01-222O13.g_70_1019 (reverse)

seq1  TGCT-AAATAGTA-CTGA-GCTCCACAG-CCCCAGCCCTAAC-TCCCTCT  45
      |||| |||||||| |||| ||||||||| ||||||||||||| ||| |||
seq2  TGCTAAAATAGTACCTGAGGCTCCACAGCCCCCAGCCCTAACTTCCTTCT  50

seq1  CTC-TCATCCCATGGCTTTCTTTGAGAATA-TAATATGATGAAATCTTTA  93
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTTCATCCCATGGCTTTCTTTGAGAATATTAATATGATGAAATCTTTA  100

seq1  TGTTAAAGAATCATATGGGA-TTTTTGGCTCATGTTGATAGAAGAACTGA  142
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTAAAGAATCATATGGGATTTTTTGGCTCATGTTGATAGAAGAACTGA  150

seq1  GAC-TTCAAATCCAGTAACCTTGTGGAACTGAATCAAATCAAAAATCTGT  191
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAAATCCAGTAACCTTGTGGAACTGAATCAAATCAAAAATCTGT  200

seq1  GTGTTGGAATGTAGCAGTAGGGTCTTCGTTGAAGTGAATACTTTCAACCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAATGTAGCAGTAGGGTCTTCGTTGAAGTGAATACTTTCAACCA  250

seq1  ACACCTTGACTCTAGTCTTATCCGAATCCCTAACTCAATTTGGGGAGGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGACTCTAGTCTTATCCGAATCCCTAACTCAATTTGGGGAGGCC  300

seq1  ATTCAATAATCTTGATCCACCTAAATTATGAAGTAGTAAGTAATTTTTCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAATCTTGATCCACCTAAATTATGAAGTAGTAAGTAATTTTTCT  350

seq1  TTTAAATAGTTAATCTTTGCATTATACTTTCACACAGCAATAAAGAACCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGTTAATCTTTGCATTATACTTTCACACAGCAATAAAGAACCA  400

seq1  ACTCAATCATACATGTATCATGTAGGCGTCAGATTATATATGGAAATGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCATACATGTATCATGTAGGCGTCAGATTATATATGGAAATGAC  450

seq1  CCAACTCTGCTGTGTTCGAAAATCCATGATATTCTCTGACCCTTTTTAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTGCTGTGTTCGAAAATCCATGATATTCTCTGACCCTTTTTAAA  500

seq1  CTTCTCTTGAATATTTTTCCGCCATAAAACTATTATTACCTCTTGCTGCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGAATATTTTTCCGCCATAAAACTATTATTACCTCTTGCTGCC  550

seq1  TGCAACTCATCTAACTGTATAAATACTGGGGTTACAGACACAGATGCTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCATCTAACTGTATAAATACTGGGGTTACAGACACAGATGCTAC  600

seq1  AATTTTTTTCATTTGAGTGCTGTGTCTGTCTTTCTGCCCTCACATTCTTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCATTTGAGTGCTGTGTCTGTCTTTCTGCCCTCACATTCTTC  650

seq1  ATTGATCAATTTTGGAACTGGGCCATCTCCCCACCATCTATGTGCATTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAATTTTGGAACTGGGCCATCTCCCCACCATCTATGTGCATTCT  700

seq1  TTTATATGATATGAATATGGACATTGTTGTACATTACAGAGTAAATTCAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATATGAATATGGACATTGTTGTACATTACAGAGTAAATTCAT  750

seq1  TGTTTTTTGTTTGTTTTTTTGTTTGGTTTTTTTGTTTGGTTTGGTTTTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTTTGTTTTTTTGTTTGGTTTTTTTGTTTGGTTTGGTTTTGT  800

seq1  TTTTGTCATTTTCTTTTTTATTAGATATTTTATTTATTTACATTTCAAAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATTTTCTTTTTTATTAGATATTTTATTTATTTACATTTCAAAT  850

seq1  GTTATCCCTTTTCCAAGTTTCTGCTCTGAAAATCTCCTATTTCCTCCCCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCTTTTCCAAGTTTCTGCTCTGAAAATCTCCTATTTCCTCCCCC  900

seq1  TTTCACCTGCTCCCCAACCCAGCCACACCTGCTTCCTGGCCCTGGAATTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTGCTCCCCAACCCAGCCACACCTGCTTCCTGGCCCTGGAATTC  950


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